Conservation of cofitness between Shew_2934 and Shew_1349 in Shewanella loihica PV-4

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 1.0 Shew_1349 flgF flagellar basal body rod protein FlgF (RefSeq) 0.57 18
Shewanella amazonensis SB2B 0.94 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.81 Sama_2314 flgF flagellar basal body rod protein FlgF (RefSeq) low > 62
Shewanella sp. ANA-3 0.93 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.85 Shewana3_1325 flgF flagellar basal body rod protein FlgF (RefSeq) low > 73
Shewanella oneidensis MR-1 0.93 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.86 SO3245 flgF flagellar basal-body rod protein FlgF (NCBI ptt file) low > 76
Pantoea sp. MT58 0.82 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 IAI47_12145 flagellar basal body rod protein FlgF low > 76
Erwinia tracheiphila SCR3 0.82 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 LU632_RS10415 flagellar basal body rod protein FlgF low > 74
Escherichia coli BL21 0.81 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.38 ECD_01073 flagellar component of cell-proximal portion of basal-body rod — —
Dickeya dianthicola 67-19 0.81 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 HGI48_RS13505 flagellar basal body rod protein FlgF — —
Escherichia coli Nissle 1917 0.81 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 ECOLIN_RS06235 flagellar basal-body rod protein FlgF — —
Escherichia coli BW25113 0.81 b0636 ybeA hypothetical protein (NCBI) 0.38 b1077 flgF flagellar component of cell-proximal portion of basal-body rod (NCBI) low > 76
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.60 CSW01_11205 flagellar basal-body rod protein FlgF low > 62
Escherichia coli ECOR27 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 NOLOHH_21185 flgF flagellar basal-body rod protein FlgF — —
Escherichia coli ECRC102 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 NIAGMN_24175 flgF flagellar basal-body rod protein FlgF — —
Escherichia coli ECRC99 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 KEDOAH_24100 flgF flagellar basal-body rod protein FlgF — —
Escherichia coli ECOR38 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 HEPCGN_23835 flgF flagellar basal-body rod protein FlgF low > 85
Escherichia coli ECRC98 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 JDDGAC_07315 flgF flagellar basal-body rod protein FlgF — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.37 HER17_RS08185 flagellar basal body rod protein FlgF low > 75
Escherichia coli ECRC101 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 OKFHMN_03655 flgF flagellar basal-body rod protein FlgF — —
Escherichia coli ECRC62 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 BNILDI_19345 flgF flagellar basal-body rod protein FlgF — —
Escherichia fergusonii Becca 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.38 EFB2_02897 Flagellar basal-body rod protein FlgF low > 86
Escherichia coli ECRC101 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 MCAODC_23015 flgF flagellar basal-body rod protein FlgF — —
Dickeya dianthicola ME23 0.80 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 DZA65_RS13990 flagellar basal body rod protein FlgF low > 75
Dickeya dadantii 3937 0.80 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.34 DDA3937_RS13460 flagellar basal body rod protein FlgF — —
Rahnella sp. WP5 0.80 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 EX31_RS11295 flagellar basal body rod protein FlgF low > 89
Serratia liquefaciens MT49 0.80 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 IAI46_15940 flagellar basal body rod protein FlgF low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.35 GFF3358 Flagellar basal-body rod protein FlgF low > 78
Enterobacter sp. TBS_079 0.79 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.38 MPMX20_01756 Flagellar basal-body rod protein FlgF low > 85
Enterobacter asburiae PDN3 0.79 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.37 EX28DRAFT_1855 flagellar hook-basal body protein — —
Alteromonas macleodii MIT1002 0.76 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.59 MIT1002_01043 Putative proximal rod protein — —
Marinobacter adhaerens HP15 0.61 HP15_604 conserved hypothetical protein CHP00246 0.48 HP15_1471 flagellar basal-body rod FlgF low > 73
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4366 Protein of unknown function DUF163 0.55 Psyr_3476 Flagellar basal body rod protein:Protein of unknown function DUF1078 — —
Pseudomonas putida KT2440 0.60 PP_4808 23S rRNA m3psi1915 methyltransferase 0.55 PP_4386 flagellar basal-body rod protein FlgF low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4366 Protein of unknown function DUF163 0.55 Psyr_3476 Flagellar basal body rod protein:Protein of unknown function DUF1078 low > 86
Pseudomonas fluorescens SBW25 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 PFLU_RS21860 flagellar basal body rod protein FlgF low > 109
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 PFLU_RS21860 flagellar basal body rod protein FlgF low > 109
Pseudomonas simiae WCS417 0.60 PS417_24730 50S rRNA methyltransferase 0.53 PS417_19890 flagellar basal body rod protein FlgF — —
Pseudomonas sp. RS175 0.60 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.54 PFR28_00804 Flagellar basal-body rod protein FlgF low > 88
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.53 Pf6N2E2_2628 Flagellar basal-body rod protein FlgF low > 103
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.53 Pf1N1B4_3568 Flagellar basal-body rod protein FlgF — —
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.53 PfGW456L13_4387 Flagellar basal-body rod protein FlgF low > 87
Pseudomonas sp. S08-1 0.59 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.53 OH686_02955 Flagellar basal-body rod protein FlgF low > 80
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_15305 50S rRNA methyltransferase 0.53 AO356_03930 flagellar biosynthesis protein FlgF low > 104
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_06480 50S rRNA methyltransferase 0.53 AO353_18595 flagellar biosynthesis protein FlgF low > 101
Pseudomonas stutzeri RCH2 0.57 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.54 Psest_2964 flagellar basal-body rod protein FlgF low > 67
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 ABZR86_RS20095 flagellar basal-body rod protein FlgF low > 74
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 OKGIIK_02670 flgF flagellar basal-body rod protein FlgF low > 52
Rhodanobacter denitrificans MT42 0.52 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 LRK55_RS13165 flagellar basal-body rod protein FlgF low > 63
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 LRK54_RS13425 flagellar basal-body rod protein FlgF low > 59
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 QEN71_RS28900 flagellar basal-body rod protein FlgF low > 153
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS04710 50S rRNA methyltransferase 0.44 RR42_RS35705 flagellar basal body rod protein FlgF low > 128
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.49 HSERO_RS10200 flagellar basal body rod protein FlgF low > 78
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.44 BPHYT_RS18875 flagellar basal body rod protein FlgF low > 109
Paraburkholderia graminis OAS925 0.49 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.41 ABIE53_000097 flagellar basal-body rod protein FlgF — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 RPSI07_RS01410 flagellar basal-body rod protein FlgF low > 81
Ralstonia solanacearum GMI1000 0.49 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 RS_RS18815 flagellar basal-body rod protein FlgF — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.44 H281DRAFT_05766 flagellar basal-body rod protein FlgF low > 103
Lysobacter sp. OAE881 0.49 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ABIE51_RS16690 flagellar basal body rod protein FlgF low > 62
Castellaniella sp019104865 MT123 0.48 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 ABCV34_RS05750 flagellar basal-body rod protein FlgF low > 48
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 ABZR87_RS22270 flagellar basal-body rod protein FlgF low > 80
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 RALBFv3_RS21720 flagellar basal-body rod protein FlgF low > 76
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.39 Ac3H11_1373 Flagellar basal-body rod protein FlgF low > 79
Ralstonia solanacearum UW163 0.48 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 UW163_RS17465 flagellar basal-body rod protein FlgF — —
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.36 Xcc-8004.2782.1 Flagellar basal-body rod protein FlgF — —
Variovorax sp. SCN45 0.46 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.40 GFF5719 Flagellar basal-body rod protein FlgF — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.39 GFF1411 Flagellar basal-body rod protein FlgF low > 90
Dechlorosoma suillum PS 0.44 Dsui_0451 hypothetical protein 0.44 Dsui_2520 flagellar basal-body rod protein FlgF low > 51
Azospirillum brasilense Sp245 0.28 AZOBR_RS04060 50S rRNA methyltransferase 0.21 AZOBR_RS32140 flagellar basal body rod protein FlgG low > 97
Phaeobacter inhibens DSM 17395 0.28 PGA1_c29750 putative ribosomal RNA large subunit methyltransferase 0.17 PGA1_c35790 flagellar basal-body rod protein FlgF low > 62
Magnetospirillum magneticum AMB-1 0.26 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.18 AMB_RS17685 flagellar basal-body rod protein FlgF low > 64
Azospirillum sp. SherDot2 0.26 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.20 MPMX19_05904 Flagellar basal-body rod protein FlgG low > 112
Dinoroseobacter shibae DFL-12 0.26 Dshi_0088 protein of unknown function DUF163 (RefSeq) 0.20 Dshi_3251 flagellar basal body rod protein (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS14825 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.20 A4249_RS09620 flagellar basal-body rod protein FlgF low > 48
Bosea sp. OAE506 0.20 ABIE41_RS07565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.23 ABIE41_RS13415 flagellar basal-body rod protein FlgF low > 77

Not shown: 22 genomes with orthologs for Shew_2934 only; 3 genomes with orthologs for Shew_1349 only