Conservation of cofitness between BT0682 and BT4237 in Bacteroides thetaiotaomicron VPI-5482

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT0682 two-component system response regulator (NCBI ptt file) 1.0 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) 0.38 11
Bacteroides ovatus ATCC 8483 0.86 BACOVA_02385 response regulator receiver domain protein 0.82 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Phocaeicola dorei CL03T12C01 0.72 ABI39_RS05370 response regulator transcription factor 0.70 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA low > 72
Parabacteroides merdae CL09T00C40 0.66 HMPREF1078_RS01665 response regulator transcription factor 0.62 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS09450 response regulator transcription factor 0.42 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA low > 71
Enterobacter sp. TBS_079 0.40 MPMX20_02319 Transcriptional regulatory protein CusR 0.26 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Enterobacter asburiae PDN3 0.40 EX28DRAFT_1165 heavy metal response regulator 0.27 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Shewanella sp. ANA-3 0.40 Shewana3_4296 DNA-binding transcriptional activator CusR (RefSeq) 0.25 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_3258 two component heavy metal response transcriptional regulator (RefSeq) 0.26 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Dickeya dianthicola 67-19 0.39 HGI48_RS03485 heavy metal response regulator transcription factor 0.26 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Dickeya dianthicola ME23 0.39 DZA65_RS03595 copper/silver response regulator transcription factor SilR 0.27 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Azospirillum sp. SherDot2 0.39 MPMX19_00794 Transcriptional activator protein CopR 0.25 MPMX19_02005 tRNA pseudouridine synthase A — —
Escherichia coli ECRC98 0.38 JDDGAC_11350 cusR copper response regulator transcription factor CusR 0.25 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.38 OKFHMN_07705 cusR copper response regulator transcription factor CusR 0.25 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli Nissle 1917 0.38 ECOLIN_RS03125 copper response regulator transcription factor CusR 0.25 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECOR38 0.38 HEPCGN_00585 cusR copper response regulator transcription factor CusR 0.25 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia coli ECRC99 0.38 KEDOAH_20265 cusR copper response regulator transcription factor CusR 0.25 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia fergusonii Becca 0.38 EFB2_03523 Transcriptional regulatory protein CusR 0.25 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli ECRC62 0.38 BNILDI_22095 cusR copper response regulator transcription factor CusR 0.25 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC102 0.38 NIAGMN_05760 cusR copper response regulator transcription factor CusR 0.25 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_03138 Transcriptional regulatory protein CusR 0.25 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli BW25113 0.38 b0571 cusR DNA-binding response regulator in two-component regulatory system with CusS (NCBI) 0.25 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS25955 transcriptional regulator 0.25 BPHYT_RS33885 tRNA pseudouridine synthase A low > 109
Escherichia coli ECRC101 0.38 MCAODC_26920 cusR copper response regulator transcription factor CusR 0.25 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.38 ECD_00532 response regulator in two-component regulatory system with CusS 0.25 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Azospirillum brasilense Sp245 0.38 AZOBR_RS10800 XRE family transcriptional regulator 0.24 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Escherichia coli ECOR27 0.38 NOLOHH_24085 cusR copper response regulator transcription factor CusR 0.25 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas stutzeri RCH2 0.38 Psest_1185 heavy metal response regulator 0.20 Psest_2585 pseudouridylate synthase I low > 67
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1663 heavy metal response regulator 0.27 B158DRAFT_1483 pseudouridylate synthase I low > 40
Paraburkholderia graminis OAS925 0.38 ABIE53_005703 two-component system copper resistance phosphate regulon response regulator CusR 0.24 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Magnetospirillum magneticum AMB-1 0.38 AMB_RS14570 DNA-binding response regulator 0.25 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA — —
Lysobacter sp. OAE881 0.38 ABIE51_RS04165 response regulator transcription factor 0.22 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS15305 heavy metal response regulator transcription factor 0.24 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_1497 Heavy metal response regulator 0.23 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_1497 Heavy metal response regulator 0.23 Psyr_1662 tRNA pseudouridine synthase low > 86
Variovorax sp. SCN45 0.37 GFF4042 Copper-sensing two-component system response regulator CusR 0.23 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Pseudomonas simiae WCS417 0.37 PS417_18460 transcriptional regulator 0.23 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_28575 transcriptional regulator 0.22 AO353_20660 pseudouridine synthase low > 101
Castellaniella sp019104865 MT123 0.37 ABCV34_RS03230 heavy metal response regulator transcription factor 0.25 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS12420 transcriptional regulator 0.23 HSERO_RS16485 tRNA pseudouridine synthase A low > 78
Pseudomonas putida KT2440 0.37 PP_1438 response regulator 0.26 PP_1994 tRNA pseudouridine (38-40)synthase low > 96
Serratia liquefaciens MT49 0.37 IAI46_16745 heavy metal response regulator transcription factor 0.28 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS20435 heavy metal response regulator transcription factor 0.23 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25 0.37 PFLU_RS20435 heavy metal response regulator transcription factor 0.23 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas sp. S08-1 0.37 OH686_22680 Copper-sensing two-component system response regulator CusR 0.24 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS10810 response regulator transcription factor 0.24 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF3258 DNA-binding heavy metal response regulator 0.21 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Rahnella sp. WP5 0.37 EX31_RS18870 heavy metal response regulator transcription factor 0.26 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Marinobacter adhaerens HP15 0.36 HP15_3484 DNA-binding response regulator 0.26 HP15_1829 tRNA pseudouridine synthase A — —
Dechlorosoma suillum PS 0.36 Dsui_2644 heavy metal response regulator 0.22 Dsui_3194 pseudouridylate synthase I low > 51
Pseudomonas sp. RS175 0.36 PFR28_01522 Transcriptional activator protein CzcR 0.23 PFR28_02817 tRNA pseudouridine synthase A low > 88
Caulobacter crescentus NA1000 0.36 CCNA_01351 two-component response regulator protein 0.24 CCNA_00280 tRNA pseudouridine synthase A low > 66
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_01351 two-component response regulator protein 0.24 CCNA_00280 tRNA pseudouridine synthase A low > 67
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_4017 Copper-sensing two-component system response regulator CusR 0.24 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_26830 transcriptional regulator 0.23 AO356_21435 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_4017 DNA-binding heavy metal response regulator 0.24 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pectobacterium carotovorum WPP14 0.36 HER17_RS13650 heavy metal response regulator transcription factor 0.28 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_04905 DNA-binding response regulator 0.18 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Rhodospirillum rubrum S1H 0.36 Rru_A2913 Two component Transcriptional regulator, Winged helix family (NCBI) 0.24 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Alteromonas macleodii MIT1002 0.36 MIT1002_00247 Transcriptional regulatory protein CusR 0.25 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_15165 DNA-binding response regulator 0.27 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Acidovorax sp. GW101-3H11 0.35 Ac3H11_4585 DNA-binding heavy metal response regulator 0.22 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_01736 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR 0.24 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5366 DNA-binding heavy metal response regulator 0.23 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Dickeya dadantii 3937 0.35 DDA3937_RS03385 heavy metal response regulator transcription factor 0.27 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Bosea sp. OAE506 0.35 ABIE41_RS01150 response regulator transcription factor 0.22 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA low > 77
Rhodopseudomonas palustris CGA009 0.34 TX73_009945 response regulator transcription factor 0.19 TX73_003225 tRNA pseudouridine(38-40) synthase TruA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF3273 Putative two-component system response regulator YedW 0.25 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Mycobacterium tuberculosis H37Rv 0.34 Rv0602c Two component DNA binding transcriptional regulatory protein TcrA 0.18 Rv3455c Probable tRNA pseudouridine synthase a TruA (pseudouridylate synthase I) (pseudouridine synthase I) (uracil hydrolyase) — —
Agrobacterium fabrum C58 0.33 Atu0978 two component response regulator 0.23 Atu0368 tRNA pseudouridine synthase I 0.59 15
Sinorhizobium meliloti 1021 0.32 SMc00458 transcriptional regulator 0.25 SMc01099 tRNA pseudouridine synthase A 0.84 10
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.5008.1 Two-component system regulatory protein 0.19 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Klebsiella michiganensis M5al 0.32 BWI76_RS18590 DNA-binding response regulator 0.26 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS18360 response regulator transcription factor 0.19 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_1404 two component transcriptional regulator, winged helix family 0.22 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c13010 two-component system response regulator 0.22 PGA1_c05650 tRNA pseudouridine synthase A low > 62
Pantoea sp. MT58 0.27 IAI47_00340 response regulator 0.24 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76

Not shown: 0 genomes with orthologs for BT0682 only; 24 genomes with orthologs for BT4237 only