| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT1009 | | dihydroorotate dehydrogenase (NCBI ptt file) | 1.0 | BT2103 | | transcriptional regulator (NCBI ptt file) | 0.27 | 13 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.33 | CA265_RS14005 | | dihydroorotate dehydrogenase (quinone) | 0.43 | CA265_RS01265 | | GntR family transcriptional regulator | — | — |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_4100 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.14 | Ac3H11_3155 | | Putative alkanesulfonate metabolism utilization regulator | — | — |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS14065 | | quinone-dependent dihydroorotate dehydrogenase | 0.18 | ABID97_RS27715 | | GntR family transcriptional regulator | — | — |
| Variovorax sp. SCN45 | 0.32 | GFF960 | | Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) | 0.18 | GFF1678 | | Transcriptional regulator, GntR family | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF4211 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.15 | GFF3371 | | Putative alkanesulfonate metabolism utilization regulator | low | > 90 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS15985 | | quinone-dependent dihydroorotate dehydrogenase | 0.17 | LRK54_RS07865 | | GntR family transcriptional regulator | — | — |
| Dechlorosoma suillum PS | 0.29 | Dsui_2978 | | dihydroorotate dehydrogenase, subfamily 2 | 0.17 | Dsui_2210 | | transcriptional regulator | — | — |
| Rhodanobacter denitrificans MT42 | 0.29 | LRK55_RS15740 | | quinone-dependent dihydroorotate dehydrogenase | 0.17 | LRK55_RS07595 | | GntR family transcriptional regulator | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS07450 | | quinone-dependent dihydroorotate dehydrogenase | 0.16 | ABZR86_RS14705 | | GntR family transcriptional regulator | — | — |
| Pseudomonas putida KT2440 | 0.29 | PP_2095 | | Dihydroorotate dehydrogenase (quinone) | 0.19 | PP_0204 | | Transcriptional regulator, GntR family | — | — |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS07790 | | quinone-dependent dihydroorotate dehydrogenase | 0.13 | ABCV34_RS01680 | | GntR family transcriptional regulator | — | — |
| Pantoea sp. MT58 | 0.28 | IAI47_12705 | | quinone-dependent dihydroorotate dehydrogenase | 0.14 | IAI47_07750 | | phosphonate metabolism transcriptional regulator PhnF | low | > 76 |
| Escherichia coli ECOR38 | 0.28 | HEPCGN_23225 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | HEPCGN_02770 | mngR | GntR family transcriptional regulator | low | > 85 |
| Escherichia fergusonii Becca | 0.28 | EFB2_03126 | | Dihydroorotate dehydrogenase (quinone) | 0.16 | EFB2_01756 | | HTH-type transcriptional repressor NagR | low | > 86 |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS04965 | | quinone-dependent dihydroorotate dehydrogenase | 0.16 | ECOLIN_RS12325 | | GntR family transcriptional regulator | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.28 | GFF3236 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.17 | GFF508 | | Transcriptional regulator, GntR family | low | > 78 |
| Escherichia coli BL21 | 0.28 | ECD_00949 | | dihydro-orotate oxidase, FMN-linked | 0.16 | ECD_02029 | | putative DNA-binding transcriptional regulator | — | — |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_22440 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | KEDOAH_04065 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_02035 | | Dihydroorotate dehydrogenase (quinone) | 0.16 | MIT1002_03830 | | HTH-type transcriptional repressor YvoA | low | > 70 |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_08905 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | JDDGAC_28195 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Escherichia coli BW25113 | 0.28 | b0945 | pyrD | dihydroorotate dehydrogenase (NCBI) | 0.16 | b2101 | yegW | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.28 | MCAODC_24685 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | MCAODC_21075 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_02721 | | Dihydroorotate dehydrogenase (quinone) | 0.16 | OHPLBJKB_01609 | | HTH-type transcriptional repressor YvoA | low | > 73 |
| Escherichia coli ECOR27 | 0.28 | NOLOHH_21850 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | NOLOHH_15425 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Pseudomonas simiae WCS417 | 0.28 | PS417_20935 | | dihydroorotate dehydrogenase | 0.16 | PS417_22980 | | GntR family transcriptional regulator | — | — |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS12855 | | quinone-dependent dihydroorotate dehydrogenase | 0.14 | DDA3937_RS07595 | | phosphonate metabolism transcriptional regulator PhnF | low | > 74 |
| Escherichia coli ECRC62 | 0.28 | BNILDI_20015 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | BNILDI_14340 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_03015 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | NIAGMN_22030 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Escherichia coli ECRC101 | 0.28 | OKFHMN_05295 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.16 | OKFHMN_24085 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Dickeya dianthicola 67-19 | 0.28 | HGI48_RS12925 | | quinone-dependent dihydroorotate dehydrogenase | 0.14 | HGI48_RS07445 | | phosphonate metabolism transcriptional regulator PhnF | low | > 71 |
| Pseudomonas fluorescens SBW25 | 0.28 | PFLU_RS22550 | | quinone-dependent dihydroorotate dehydrogenase | 0.16 | PFLU_RS24640 | | GntR family transcriptional regulator | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.28 | PFLU_RS22550 | | quinone-dependent dihydroorotate dehydrogenase | 0.16 | PFLU_RS24640 | | GntR family transcriptional regulator | — | — |
| Dickeya dianthicola ME23 | 0.27 | DZA65_RS13390 | | quinone-dependent dihydroorotate dehydrogenase | 0.14 | DZA65_RS07950 | | phosphonate metabolism transcriptional regulator PhnF | low | > 75 |
| Enterobacter asburiae PDN3 | 0.27 | EX28DRAFT_1998 | | dihydroorotate oxidase A (EC 1.3.3.1) | 0.17 | EX28DRAFT_0470 | | Transcriptional regulators | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_2106 | | dihydroorotate oxidase A | 0.14 | Psyr_3135 | | transcriptional regulator, GntR family | — | — |
| Pseudomonas stutzeri RCH2 | 0.27 | Psest_1947 | | dihydroorotate dehydrogenase, subfamily 2 | 0.13 | Psest_0097 | | phosphonates metabolism transcriptional regulator PhnF | low | > 67 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.27 | Xcc-8004.3032.1 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.17 | Xcc-8004.953.1 | | Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family | — | — |
| Rhodanobacter sp. FW510-T8 | 0.27 | OKGIIK_09010 | pyrD | quinone-dependent dihydroorotate dehydrogenase | 0.17 | OKGIIK_14355 | mngR | GntR family transcriptional regulator | — | — |
| Enterobacter sp. TBS_079 | 0.27 | MPMX20_01596 | | Dihydroorotate dehydrogenase (quinone) | 0.16 | MPMX20_03075 | | HTH-type transcriptional repressor NagR | low | > 85 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_2106 | | dihydroorotate oxidase A | 0.14 | Psyr_3135 | | transcriptional regulator, GntR family | — | — |
| Burkholderia phytofirmans PsJN | 0.27 | BPHYT_RS08565 | | dihydroorotate dehydrogenase | 0.15 | BPHYT_RS03010 | | GntR family transcriptional regulator | low | > 109 |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS09910 | | dihydroorotate dehydrogenase (quinone) | 0.12 | BWI76_RS27890 | | GntR family transcriptional regulator | low | > 92 |
| Cupriavidus basilensis FW507-4G11 | 0.27 | RR42_RS07465 | | dihydroorotate dehydrogenase | 0.19 | RR42_RS21095 | | GntR family transcriptional regulator | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.27 | H281DRAFT_00743 | | dihydroorotate oxidase A | 0.19 | H281DRAFT_02543 | | GntR family transcriptional regulator | — | — |
| Pectobacterium carotovorum WPP14 | 0.27 | HER17_RS12005 | | quinone-dependent dihydroorotate dehydrogenase | 0.18 | HER17_RS16070 | | GntR family transcriptional regulator | low | > 75 |
| Pseudomonas sp. S08-1 | 0.27 | OH686_03120 | | dihydroorotate dehydrogenase (fumarate) | 0.19 | OH686_23055 | | Putative alkanesulfonate metabolism utilization regulator | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_2347 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.16 | Pf6N2E2_1506 | | Putative alkanesulfonate metabolism utilization regulator | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.27 | QEN71_RS22765 | | quinone-dependent dihydroorotate dehydrogenase | 0.20 | QEN71_RS32480 | | GntR family transcriptional regulator | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.27 | PfGW456L13_4095 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.20 | PfGW456L13_2811 | | Putative alkanesulfonate metabolism utilization regulator | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.27 | AO356_02610 | | dihydroorotate dehydrogenase (quinone) | 0.21 | AO356_21765 | | GntR family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.27 | AO353_00780 | | dihydroorotate dehydrogenase (quinone) | 0.15 | AO353_28380 | | GntR family transcriptional regulator | — | — |
| Paraburkholderia graminis OAS925 | 0.27 | ABIE53_001954 | | dihydroorotate dehydrogenase | 0.21 | ABIE53_002555 | | GntR family transcriptional regulator | — | — |
| Pseudomonas sp. RS175 | 0.27 | PFR28_01054 | | Dihydroorotate dehydrogenase (quinone) | 0.16 | PFR28_03511 | | HTH-type transcriptional repressor NagR | — | — |
| Ralstonia sp. UNC404CL21Col | 0.26 | ABZR87_RS13360 | | quinone-dependent dihydroorotate dehydrogenase | 0.21 | ABZR87_RS18335 | | GntR family transcriptional regulator | — | — |
| Azospirillum sp. SherDot2 | 0.26 | MPMX19_02083 | | Dihydroorotate dehydrogenase (quinone) | 0.18 | MPMX19_04664 | | hypothetical protein | — | — |
| Ralstonia solanacearum UW163 | 0.26 | UW163_RS14880 | | quinone-dependent dihydroorotate dehydrogenase | 0.19 | UW163_RS23575 | | GntR family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.26 | RALBFv3_RS01570 | | quinone-dependent dihydroorotate dehydrogenase | 0.19 | RALBFv3_RS22955 | | GntR family transcriptional regulator | — | — |
| Serratia liquefaciens MT49 | 0.26 | IAI46_08805 | | quinone-dependent dihydroorotate dehydrogenase | 0.14 | IAI46_02110 | | phosphonate metabolism transcriptional regulator PhnF | low | > 86 |
| Rahnella sp. WP5 | 0.26 | EX31_RS18095 | | quinone-dependent dihydroorotate dehydrogenase | 0.16 | EX31_RS13550 | | GntR family transcriptional regulator | low | > 89 |
| Ralstonia solanacearum GMI1000 | 0.26 | RS_RS08160 | | dihydroorotate dehydrogenase (quinone) | 0.19 | RS_RS17570 | | GntR family transcriptional regulator | — | — |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS16155 | | dihydroorotate dehydrogenase | 0.16 | HSERO_RS22990 | | transcriptional regulator | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.25 | Ga0059261_1468 | | dihydroorotate oxidase A (EC 1.3.3.1) | 0.16 | Ga0059261_1638 | | transcriptional regulator, GntR family | — | — |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS15920 | | quinone-dependent dihydroorotate dehydrogenase | 0.19 | RPSI07_RS00285 | | GntR family transcriptional regulator | — | — |
| Shewanella loihica PV-4 | 0.25 | Shew_1810 | | dihydroorotate dehydrogenase 2 (RefSeq) | 0.11 | Shew_3758 | | histidine utilization repressor (RefSeq) | low | > 60 |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS13725 | | quinone-dependent dihydroorotate dehydrogenase | 0.15 | ABIE51_RS01625 | | GntR family transcriptional regulator | — | — |
| Azospirillum brasilense Sp245 | 0.24 | AZOBR_RS13520 | | dihydroorotate dehydrogenase | 0.18 | AZOBR_RS15620 | | GntR family transcriptional regulator | low | > 97 |
| Shewanella amazonensis SB2B | 0.24 | Sama_1593 | | dihydroorotate dehydrogenase 2 (RefSeq) | 0.10 | Sama_0081 | | histidine utilization repressor (RefSeq) | low | > 62 |
| Mycobacterium tuberculosis H37Rv | 0.23 | Rv2139 | | Probable dihydroorotate dehydrogenase PyrD | 0.17 | Rv0792c | | Probable transcriptional regulatory protein (probably GntR-family) | — | — |
| Caulobacter crescentus NA1000 | 0.22 | CCNA_00562 | | dihydroorotate dehydrogenase | 0.16 | CCNA_00454 | | GntR-family transcriptional regulator | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.22 | CCNA_00562 | | dihydroorotate dehydrogenase | 0.16 | CCNA_00454 | | GntR-family transcriptional regulator | low | > 67 |
| Bifidobacterium breve UCC2003 | 0.14 | BBR_RS12895 | | quinone-dependent dihydroorotate dehydrogenase | 0.12 | BBR_RS20315 | | GntR family transcriptional regulator | low | > 34 |
Not shown: 14 genomes with orthologs for BT1009 only; 7 genomes with orthologs for BT2103 only