Conservation of cofitness between SO0873 and SO4603 in Shewanella oneidensis MR-1

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 1.0 SO4603 lexA LexA repressor (NCBI ptt file) 0.31 9
Shewanella sp. ANA-3 0.90 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.92 Shewana3_3989 LexA repressor (RefSeq) low > 73
Shewanella amazonensis SB2B 0.68 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) 0.87 Sama_3481 LexA repressor (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.86 Shew_0127 LexA repressor (RefSeq) low > 60
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.69 EX28DRAFT_4269 SOS regulatory protein LexA low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.69 MPMX20_00259 LexA repressor — —
Escherichia coli BL21 0.50 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.69 ECD_03915 transcriptional repressor of SOS regulon — —
Escherichia coli ECOR27 0.50 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 NOLOHH_05220 lexA transcriptional repressor LexA — —
Escherichia coli BW25113 0.50 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.69 b4043 lexA LexA repressor (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.69 OHPLBJKB_04000 LexA repressor — —
Escherichia coli ECRC102 0.50 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 NIAGMN_10815 lexA transcriptional repressor LexA — —
Escherichia coli ECRC100 0.50 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 OKFHMN_13065 lexA transcriptional repressor LexA — —
Escherichia coli ECRC101 0.50 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 MCAODC_03565 lexA transcriptional repressor LexA — —
Escherichia coli ECRC98 0.50 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 JDDGAC_16690 lexA transcriptional repressor LexA — —
Escherichia coli ECRC99 0.50 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 KEDOAH_15095 lexA transcriptional repressor LexA — —
Escherichia coli ECOR38 0.50 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 HEPCGN_11585 lexA transcriptional repressor LexA — —
Escherichia coli ECRC62 0.50 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 BNILDI_06300 lexA transcriptional repressor LexA — —
Escherichia fergusonii Becca 0.50 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.69 EFB2_04560 LexA repressor low > 86
Escherichia coli Nissle 1917 0.50 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.69 ECOLIN_RS23335 transcriptional repressor LexA — —
Klebsiella michiganensis M5al 0.49 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.70 BWI76_RS01875 repressor LexA — —
Serratia liquefaciens MT49 0.49 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.68 IAI46_23005 repressor LexA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF88 glutamyl-Q-tRNA synthetase 0.69 GFF1412 SOS-response repressor and protease LexA (EC 3.4.21.88) — —
Dickeya dianthicola 67-19 0.48 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.69 HGI48_RS02735 repressor LexA — —
Dickeya dianthicola ME23 0.47 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.70 DZA65_RS02890 repressor LexA — —
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.75 CSW01_00490 repressor LexA — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.69 HER17_RS18795 transcriptional repressor LexA — —
Rahnella sp. WP5 0.47 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.69 EX31_RS11845 repressor LexA low > 89
Dickeya dadantii 3937 0.47 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.70 DDA3937_RS02760 repressor LexA — —
Pantoea sp. MT58 0.47 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.68 IAI47_17890 repressor LexA — —
Erwinia tracheiphila SCR3 0.46 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.67 LU632_RS22315 lexA transcriptional repressor LexA — —
Erwinia amylovora T8 0.46 OLJFJH_00770 tRNA glutamyl-Q(34) synthetase GluQRS 0.67 OLJFJH_03580 transcriptional repressor LexA low > 58
Alteromonas macleodii MIT1002 0.44 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.72 MIT1002_04036 LexA repressor low > 70
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29995 tRNA glutamyl-Q(34) synthetase GluQRS 0.61 IKLFDK_15300 transcriptional repressor LexA — —
Pseudomonas sp. S08-1 0.42 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase 0.61 OH686_21960 repressor LexA low > 80
Lysobacter sp. OAE881 0.40 ABIE51_RS13520 tRNA glutamyl-Q(34) synthetase GluQRS 0.39 ABIE51_RS11835 transcriptional repressor LexA low > 62
Pseudomonas putida KT2440 0.40 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 0.63 PP_2143 transcriptional repressor — —
Pseudomonas sp. SVBP6 0.40 COO64_RS15075 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.62 COO64_RS09430 lexA transcriptional repressor LexA — —
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.61 PfGW456L13_4034 SOS-response repressor and protease LexA (EC 3.4.21.88) — —
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 0.63 Pf6N2E2_2283 SOS-response repressor and protease LexA (EC 3.4.21.88) — —
Pseudomonas sp. BP01 0.39 JOY50_RS27690 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.63 JOY50_RS25070 lexA transcriptional repressor LexA low > 84
Pseudomonas sp. DMC3 0.39 GFF4033 Glutamyl-Q tRNA(Asp) synthetase 0.62 GFF1278 LexA repressor low > 89
Pseudomonas stutzeri RCH2 0.39 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase 0.63 Psest_2646 SOS regulatory protein LexA low > 67
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_16090 glutamyl-Q tRNA(Asp) ligase 0.63 AO356_02295 LexA family transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.62 AO353_00465 LexA family transcriptional regulator — —
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.62 Pf1N1B4_3910 SOS-response repressor and protease LexA (EC 3.4.21.88) — —
Dechlorosoma suillum PS 0.39 Dsui_1040 glutamyl-queuosine tRNA(Asp) synthetase 0.53 Dsui_2269 SOS regulatory protein LexA low > 51
Pseudomonas sp. RS175 0.39 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.62 PFR28_01117 LexA repressor — —
Pseudomonas simiae WCS417 0.38 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.62 PS417_07610 LexA family transcriptional regulator — —
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.2261.1 glutamyl-Q-tRNA synthetase 0.39 Xcc-8004.3898.1 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 74
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 PFLU_RS07685 transcriptional repressor LexA low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 PFLU_RS07685 transcriptional repressor LexA low > 109
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS13775 tRNA glutamyl-Q(34) synthetase GluQRS 0.33 LRK53_RS09900 transcriptional repressor LexA low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.64 Psyr_3283 SOS-response transcriptional repressor, LexA — —
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.64 Psyr_3283 SOS-response transcriptional repressor, LexA — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS14820 tRNA glutamyl-Q(34) synthetase GluQRS 0.33 LRK54_RS00250 transcriptional repressor LexA low > 59
Rhodanobacter denitrificans MT42 0.37 LRK55_RS14535 tRNA glutamyl-Q(34) synthetase GluQRS 0.33 LRK55_RS18150 transcriptional repressor LexA low > 63
Marinobacter adhaerens HP15 0.35 HP15_331 glutamyl-Q tRNA(Asp) synthetase 0.64 HP15_2336 LexA repressor low > 73
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase 0.53 BPHYT_RS08785 LexA repressor — —
Paraburkholderia graminis OAS925 0.34 ABIE53_001439 glutamyl-Q tRNA(Asp) synthetase 0.50 ABIE53_001989 repressor LexA low > 113
Ralstonia solanacearum GMI1000 0.34 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 RS_RS06540 LexA repressor — —
Ralstonia solanacearum UW163 0.34 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 UW163_RS13205 transcriptional repressor LexA — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 RALBFv3_RS15760 transcriptional repressor LexA — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS 0.56 RPSI07_RS17605 transcriptional repressor LexA — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS17850 glutamyl-Q tRNA(Asp) ligase 0.56 HSERO_RS10365 LexA family transcriptional regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF5183 glutamyl-Q-tRNA synthetase 0.56 GFF4501 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 90
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_00309 glutamyl-Q tRNA(Asp) synthetase 0.52 H281DRAFT_00777 SOS-response transcriptional repressor, LexA low > 103
Castellaniella sp019104865 MT123 0.33 ABCV34_RS12295 glutamyl-Q tRNA(Asp) synthetase 0.46 ABCV34_RS05120 transcriptional repressor LexA low > 48
Acidovorax sp. GW101-3H11 0.33 Ac3H11_4162 glutamyl-Q-tRNA synthetase 0.51 Ac3H11_2392 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 79
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 ABZR87_RS11330 transcriptional repressor LexA 0.41 17
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS14805 glutamyl-Q tRNA(Asp) ligase 0.53 RR42_RS12615 LexA family transcriptional regulator low > 128
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS 0.52 QEN71_RS22595 transcriptional repressor LexA low > 153
Variovorax sp. SCN45 0.28 GFF592 Glutamyl-Q tRNA(Asp) synthetase 0.52 GFF357 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 127
Variovorax sp. OAS795 0.27 ABID97_RS18025 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 ABID97_RS16985 transcriptional repressor LexA low > 91

Not shown: 6 genomes with orthologs for SO0873 only; 18 genomes with orthologs for SO4603 only