Conservation of cofitness between SO0873 and SO3935 in Shewanella oneidensis MR-1

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 1.0 SO3935 vacB ribonuclease R (NCBI ptt file) 0.28 18
Shewanella sp. ANA-3 0.90 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.97 Shewana3_0697 RNAse R (RefSeq) low > 73
Shewanella amazonensis SB2B 0.68 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) 0.76 Sama_3067 exoribonuclease II (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.81 Shew_3289 ribonuclease R (RefSeq) low > 60
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.56 EX28DRAFT_3376 ribonuclease R low > 76
Escherichia coli BL21 0.50 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.56 ECD_04046 exoribonuclease R, RNase R low > 61
Enterobacter sp. TBS_079 0.50 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.56 MPMX20_00460 Ribonuclease R low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.56 OHPLBJKB_03863 Ribonuclease R low > 74
Escherichia coli ECOR27 0.50 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.56 NOLOHH_04485 rnr ribonuclease R low > 76
Escherichia coli BW25113 0.50 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.56 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli ECRC100 0.50 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.56 OKFHMN_12220 rnr ribonuclease R low > 79
Escherichia coli ECRC102 0.50 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.56 NIAGMN_10070 rnr ribonuclease R low > 80
Escherichia coli ECRC98 0.50 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.56 JDDGAC_15860 rnr ribonuclease R low > 87
Escherichia coli ECRC101 0.50 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.56 MCAODC_02735 rnr ribonuclease R low > 88
Escherichia coli ECRC99 0.50 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.56 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECOR38 0.50 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.55 HEPCGN_10450 rnr ribonuclease R 0.43 43
Escherichia fergusonii Becca 0.50 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.56 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECRC62 0.50 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.56 BNILDI_07005 rnr ribonuclease R low > 75
Escherichia coli Nissle 1917 0.50 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.56 ECOLIN_RS24265 ribonuclease R low > 55
Klebsiella michiganensis M5al 0.49 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.56 BWI76_RS02575 exoribonuclease R 0.14 82
Serratia liquefaciens MT49 0.49 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 IAI46_01660 ribonuclease R low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF88 glutamyl-Q-tRNA synthetase 0.56 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 low > 78
Klebsiella pneumoniae MKP103 0.48 KDGMDA_13265 tRNA glutamyl-Q(34) synthetase GluQRS 0.57 KDGMDA_11075 ribonuclease R low > 95
Dickeya dianthicola 67-19 0.48 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 HGI48_RS17315 ribonuclease R low > 71
Dickeya dianthicola ME23 0.47 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 DZA65_RS18405 ribonuclease R low > 75
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.57 CSW01_13155 ribonuclease R low > 62
Rahnella sp. WP5 0.47 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.57 EX31_RS08785 ribonuclease R low > 89
Pectobacterium carotovorum WPP14 0.47 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.56 HER17_RS03835 ribonuclease R low > 75
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13505_RS13360 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 PagCFBP13505_RS11220 ribonuclease R low > 74
Dickeya dadantii 3937 0.47 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 DDA3937_RS17260 ribonuclease R low > 74
Pantoea sp. MT58 0.47 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.54 IAI47_02625 ribonuclease R low > 76
Erwinia tracheiphila HP pepo 2.2 0.46 IJEDHG_15055 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.55 IJEDHG_13230 rnr ribonuclease R 0.74 49
Erwinia tracheiphila SCR3 0.46 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.55 LU632_RS21750 rnr ribonuclease R low > 74
Erwinia amylovora T8 0.46 OLJFJH_00770 tRNA glutamyl-Q(34) synthetase GluQRS 0.55 OLJFJH_02470 ribonuclease R low > 58
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0057 glutamyl-queuosine tRNA(Asp) synthetase 0.48 B158DRAFT_1989 ribonuclease R low > 40
Alteromonas macleodii MIT1002 0.44 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.50 MIT1002_03606 Ribonuclease R low > 70
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29995 tRNA glutamyl-Q(34) synthetase GluQRS 0.48 IKLFDK_28865 ribonuclease R 0.59 4
Pseudomonas sp. S08-1 0.42 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase 0.48 OH686_15910 ribonuclease R low > 80
Pseudomonas segetis P6 0.41 MPMX49_01256 Glutamyl-Q tRNA(Asp) synthetase 0.48 MPMX49_04145 Ribonuclease R low > 75
Pseudomonas putida KT2440 0.40 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 0.47 PP_4880 exoribonuclease R low > 96
Lysobacter sp. OAE881 0.40 ABIE51_RS13520 tRNA glutamyl-Q(34) synthetase GluQRS 0.37 ABIE51_RS07475 ribonuclease R low > 62
Pseudomonas sp. SVBP6 0.40 COO64_RS15075 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.47 COO64_RS17955 rnr ribonuclease R low > 93
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.48 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 0.47 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Pseudomonas sp. DMC3 0.39 GFF4033 Glutamyl-Q tRNA(Asp) synthetase 0.47 GFF3229 Ribonuclease R low > 89
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS00575 tRNA glutamyl-Q(34) synthetase GluQRS 0.39 ABZR86_RS08270 ribonuclease R 0.37 52
Pseudomonas sp. BP01 0.39 JOY50_RS27690 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.47 JOY50_RS17320 rnr ribonuclease R low > 84
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.48 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_16090 glutamyl-Q tRNA(Asp) ligase 0.48 AO356_08610 exoribonuclease R low > 104
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.48 AO353_13200 exoribonuclease R low > 101
Pseudomonas stutzeri RCH2 0.39 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase 0.48 Psest_0691 ribonuclease R low > 67
Pseudomonas lactucae CFBP13502 0.39 GEMAOFIL_04927 Glutamyl-Q tRNA(Asp) synthetase 0.47 GEMAOFIL_00747 Ribonuclease R low > 93
Dechlorosoma suillum PS 0.39 Dsui_1040 glutamyl-queuosine tRNA(Asp) synthetase 0.45 Dsui_3128 ribonuclease R low > 51
Pseudomonas sp. RS175 0.39 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.48 PFR28_05130 Ribonuclease R low > 88
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_03640 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.40 OKGIIK_06755 rnr ribonuclease R low > 52
Pseudomonas simiae WCS417 0.38 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.47 PS417_02555 exoribonuclease R 0.22 48
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.2261.1 glutamyl-Q-tRNA synthetase 0.37 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.47 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.47 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.47 Psyr_0579 RNAse R low > 86
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS13775 tRNA glutamyl-Q(34) synthetase GluQRS 0.40 LRK53_RS09655 ribonuclease R low > 59
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.47 Psyr_0579 RNAse R low > 86
Acinetobacter radioresistens SK82 0.38 MPMX26_00176 Glutamyl-Q tRNA(Asp) synthetase 0.37 MPMX26_02684 Ribonuclease R low > 36
Methylophilus sp. DMC18 0.37 GFF102 Glutamyl-Q tRNA(Asp) synthetase 0.43 GFF635 Ribonuclease R low > 43
Acinetobacter baumannii LAC-4 0.36 RR41_RS17735 tRNA glutamyl-Q(34) synthetase GluQRS 0.36 RR41_RS02345 ribonuclease R low > 55
Marinobacter adhaerens HP15 0.35 HP15_331 glutamyl-Q tRNA(Asp) synthetase 0.43 HP15_622 exoribonuclease R low > 73
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase 0.42 BPHYT_RS08455 ribonuclease R low > 109
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_0922 gltX Glutamate--tRNA ligase 0.12 Synpcc7942_1911 zam Cold shock protein low > 38
Ralstonia solanacearum GMI1000 0.34 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS 0.43 RS_RS06155 ribonuclease R low > 80
Ralstonia solanacearum UW163 0.34 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS 0.42 UW163_RS12810 ribonuclease R — —
Paraburkholderia graminis OAS925 0.34 ABIE53_001439 glutamyl-Q tRNA(Asp) synthetase 0.42 ABIE53_001940 ribonuclease R low > 113
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS 0.42 RALBFv3_RS15345 ribonuclease R low > 76
Ralstonia solanacearum PSI07 0.34 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS 0.43 RPSI07_RS18030 ribonuclease R low > 81
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS17850 glutamyl-Q tRNA(Asp) ligase 0.41 HSERO_RS09290 ribonuclease R low > 78
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_00309 glutamyl-Q tRNA(Asp) synthetase 0.42 H281DRAFT_00712 RNAse R low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF5183 glutamyl-Q-tRNA synthetase 0.38 GFF4921 3'-to-5' exoribonuclease RNase R low > 90
Castellaniella sp019104865 MT123 0.33 ABCV34_RS12295 glutamyl-Q tRNA(Asp) synthetase 0.39 ABCV34_RS06625 ribonuclease R low > 48
Acidovorax sp. GW101-3H11 0.33 Ac3H11_4162 glutamyl-Q-tRNA synthetase 0.38 Ac3H11_412 3'-to-5' exoribonuclease RNase R low > 79
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS 0.43 ABZR87_RS10985 ribonuclease R low > 80
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS14805 glutamyl-Q tRNA(Asp) ligase 0.43 RR42_RS13065 ribonuclease R low > 128
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS 0.42 QEN71_RS22925 ribonuclease R low > 153
Variovorax sp. SCN45 0.28 GFF592 Glutamyl-Q tRNA(Asp) synthetase 0.38 GFF399 3'-to-5' exoribonuclease RNase R low > 127
Variovorax sp. OAS795 0.27 ABID97_RS18025 tRNA glutamyl-Q(34) synthetase GluQRS 0.38 ABID97_RS17200 ribonuclease R low > 91

Not shown: 2 genomes with orthologs for SO0873 only; 21 genomes with orthologs for SO3935 only