Conservation of cofitness between SO0873 and SO2626 in Shewanella oneidensis MR-1

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 1.0 SO2626 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) 0.33 6
Shewanella sp. ANA-3 0.90 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.98 Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.68 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) 0.89 Sama_2056 ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.86 Shew_1566 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 60
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.70 EX28DRAFT_2050 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.70 MPMX20_01544 ATP-dependent Clp protease ATP-binding subunit ClpA low > 85
Escherichia coli BL21 0.50 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.70 ECD_00887 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.70 OHPLBJKB_02786 ATP-dependent Clp protease ATP-binding subunit ClpA low > 73
Escherichia coli BW25113 0.50 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.70 b0882 clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) low > 76
Escherichia coli ECOR27 0.50 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 NOLOHH_22180 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Escherichia coli ECRC100 0.50 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 OKFHMN_05785 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Escherichia coli ECRC102 0.50 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 NIAGMN_03825 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECRC98 0.50 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 JDDGAC_09420 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Escherichia coli ECRC99 0.50 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 KEDOAH_22125 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECRC101 0.50 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 MCAODC_25000 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Escherichia coli ECRC62 0.50 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 BNILDI_20435 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Escherichia fergusonii Becca 0.50 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.70 EFB2_03179 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Escherichia coli ECOR38 0.50 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.70 HEPCGN_22900 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.64 29
Escherichia coli Nissle 1917 0.50 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.70 ECOLIN_RS04695 ATP-dependent Clp protease ATP-binding subunit ClpA low > 55
Klebsiella michiganensis M5al 0.49 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.70 BWI76_RS09615 ATP-dependent Clp protease ATP-binding subunit ClpA low > 92
Serratia liquefaciens MT49 0.49 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.70 IAI46_08515 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF88 glutamyl-Q-tRNA synthetase 0.70 GFF4901 ATP-dependent Clp protease ATP-binding subunit ClpA low > 78
Dickeya dianthicola 67-19 0.48 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.71 HGI48_RS09575 ATP-dependent Clp protease ATP-binding subunit ClpA low > 71
Dickeya dianthicola ME23 0.47 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.71 DZA65_RS09885 ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Rahnella sp. WP5 0.47 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.70 EX31_RS18560 ATP-dependent Clp protease ATP-binding subunit ClpA low > 89
Pectobacterium carotovorum WPP14 0.47 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.71 HER17_RS12400 ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.70 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA low > 62
Dickeya dadantii 3937 0.47 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.71 DDA3937_RS09560 ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Pantoea sp. MT58 0.47 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.71 IAI47_12945 ATP-dependent Clp protease ATP-binding subunit ClpA low > 76
Erwinia tracheiphila SCR3 0.46 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.69 LU632_RS09705 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Erwinia amylovora T8 0.46 OLJFJH_00770 tRNA glutamyl-Q(34) synthetase GluQRS 0.71 OLJFJH_16215 ATP-dependent Clp protease ATP-binding subunit ClpA low > 58
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0057 glutamyl-queuosine tRNA(Asp) synthetase 0.68 B158DRAFT_1505 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 40
Alteromonas macleodii MIT1002 0.44 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.73 MIT1002_01834 ATP-dependent Clp protease ATP-binding subunit ClpA low > 70
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29995 tRNA glutamyl-Q(34) synthetase GluQRS 0.68 IKLFDK_13150 ATP-dependent Clp protease ATP-binding subunit ClpA low > 101
Pseudomonas sp. S08-1 0.42 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase 0.67 OH686_00235 ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Lysobacter sp. OAE881 0.40 ABIE51_RS13520 tRNA glutamyl-Q(34) synthetase GluQRS 0.64 ABIE51_RS11490 ATP-dependent Clp protease ATP-binding subunit ClpA low > 62
Pseudomonas putida KT2440 0.40 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 0.68 PP_4008 ATP-dependent serine protease low > 96
Pseudomonas sp. SVBP6 0.40 COO64_RS15075 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.68 COO64_RS24200 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 93
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.68 PfGW456L13_2646 ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 0.68 Pf6N2E2_292 ATP-dependent Clp protease ATP-binding subunit ClpA low > 103
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS00575 tRNA glutamyl-Q(34) synthetase GluQRS 0.64 ABZR86_RS02200 ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Pseudomonas sp. DMC3 0.39 GFF4033 Glutamyl-Q tRNA(Asp) synthetase 0.68 GFF1525 ATP-dependent Clp protease ATP-binding subunit ClpA low > 89
Pseudomonas sp. BP01 0.39 JOY50_RS27690 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.68 JOY50_RS06555 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 84
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_16090 glutamyl-Q tRNA(Asp) ligase 0.68 AO356_22150 ATP-dependent Clp protease ATP-binding subunit ClpA low > 104
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.68 Pf1N1B4_4055 ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.68 AO353_27675 ATP-dependent Clp protease ATP-binding subunit ClpA low > 101
Pseudomonas stutzeri RCH2 0.39 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase 0.68 Psest_2027 ATP-dependent Clp protease ATP-binding subunit clpA low > 67
Dechlorosoma suillum PS 0.39 Dsui_1040 glutamyl-queuosine tRNA(Asp) synthetase 0.63 Dsui_0009 ATP-dependent Clp protease ATP-binding subunit clpA low > 51
Pseudomonas sp. RS175 0.39 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.68 PFR28_02613 ATP-dependent Clp protease ATP-binding subunit ClpA low > 88
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_03640 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.63 OKGIIK_06890 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 52
Pseudomonas simiae WCS417 0.38 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.69 PS417_16510 Clp protease ClpX low > 88
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.2261.1 glutamyl-Q-tRNA synthetase 0.64 Xcc-8004.2754.1 ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.68 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.68 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA low > 109
Acinetobacter radioresistens SK82 0.38 MPMX26_00176 Glutamyl-Q tRNA(Asp) synthetase 0.58 MPMX26_01284 ATP-dependent Clp protease ATP-binding subunit ClpA low > 36
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.68 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS13775 tRNA glutamyl-Q(34) synthetase GluQRS 0.63 LRK53_RS09730 ATP-dependent Clp protease ATP-binding subunit ClpA low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.68 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Methylophilus sp. DMC18 0.37 GFF102 Glutamyl-Q tRNA(Asp) synthetase 0.64 GFF1738 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Rhodanobacter denitrificans MT42 0.37 LRK55_RS14535 tRNA glutamyl-Q(34) synthetase GluQRS 0.63 LRK55_RS00160 ATP-dependent Clp protease ATP-binding subunit ClpA low > 63
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS14820 tRNA glutamyl-Q(34) synthetase GluQRS 0.63 LRK54_RS00420 ATP-dependent Clp protease ATP-binding subunit ClpA low > 59
Marinobacter adhaerens HP15 0.35 HP15_331 glutamyl-Q tRNA(Asp) synthetase 0.69 HP15_2080 ATP-dependent Clp protease ATP-binding subunit ClpA low > 73
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase 0.62 BPHYT_RS15710 ATP-dependent Clp protease ATP-binding protein low > 109
Ralstonia solanacearum GMI1000 0.34 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 RS_RS12370 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 RALBFv3_RS04810 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Ralstonia solanacearum UW163 0.34 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 UW163_RS08860 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 RPSI07_RS12575 ATP-dependent Clp protease ATP-binding subunit ClpA low > 81
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS17850 glutamyl-Q tRNA(Asp) ligase 0.63 HSERO_RS07030 ATP-dependent Clp protease ATP-binding protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF5183 glutamyl-Q-tRNA synthetase 0.61 GFF4521 ATP-dependent Clp protease ATP-binding subunit ClpA low > 90
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_00309 glutamyl-Q tRNA(Asp) synthetase 0.62 H281DRAFT_04082 ATP-dependent Clp protease ATP-binding subunit ClpA low > 103
Castellaniella sp019104865 MT123 0.33 ABCV34_RS12295 glutamyl-Q tRNA(Asp) synthetase 0.60 ABCV34_RS05305 ATP-dependent Clp protease ATP-binding subunit ClpA low > 48
Acidovorax sp. GW101-3H11 0.33 Ac3H11_4162 glutamyl-Q-tRNA synthetase 0.62 Ac3H11_2456 ATP-dependent Clp protease ATP-binding subunit ClpA low > 79
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS 0.63 ABZR87_RS00435 ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS14805 glutamyl-Q tRNA(Asp) ligase 0.62 RR42_RS17105 Clp protease ClpX low > 128
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 QEN71_RS03005 ATP-dependent Clp protease ATP-binding subunit ClpA low > 153
Variovorax sp. SCN45 0.28 GFF592 Glutamyl-Q tRNA(Asp) synthetase 0.62 GFF341 ATP-dependent Clp protease ATP-binding subunit ClpA low > 127
Variovorax sp. OAS795 0.27 ABID97_RS18025 tRNA glutamyl-Q(34) synthetase GluQRS 0.62 ABID97_RS16910 ATP-dependent Clp protease ATP-binding subunit ClpA low > 91

Not shown: 2 genomes with orthologs for SO0873 only; 20 genomes with orthologs for SO2626 only