Conservation of cofitness between b3822 and b3700 in Escherichia coli BW25113

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b3700 recF recombination protein F (NCBI) 0.41 2
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 1.00 ECOLIN_RS21310 DNA replication/repair protein RecF low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 1.00 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 1.00 NOLOHH_07165 recF DNA replication/repair protein RecF low > 57
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 1.00 JDDGAC_18645 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 1.00 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 1.00 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 1.00 MCAODC_05535 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_04365 recF DNA replication/repair protein RecF — —
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 1.00 HEPCGN_13720 recF DNA replication/repair protein RecF low > 85
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 1.00 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_03583 gap repair protein 0.79 3
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.96 GFF1756 DNA recombination and repair protein RecF 0.63 7
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.96 MPMX20_00003 DNA replication and repair protein RecF low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.96 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.94 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.81 HER17_RS00015 DNA replication/repair protein RecF low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.83 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.83 IAI47_00015 DNA replication/repair protein RecF 0.34 22
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.81 EX31_RS05975 DNA replication/repair protein RecF low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.84 IAI46_00015 DNA replication/repair protein RecF 0.72 7
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.82 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.82 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.82 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.56 CSW01_00065 DNA replication and repair protein RecF low > 62
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.46 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.44 12
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.46 Shewana3_0011 recF recombination protein F (RefSeq) 0.82 2
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.44 Sama_0015 recF recombination protein F (RefSeq) 0.79 3
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.46 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.75 7
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.33 MIT1002_00003 DNA replication and repair protein RecF low > 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.15 CA264_17475 DNA replication and repair protein RecF 0.60 5
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.38 PfGW456L13_664 DNA recombination and repair protein RecF 0.38 10
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.40 PP_0012 DNA replication and repair protein low > 96
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.38 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.38 AO356_11635 recombinase RecF 0.24 25
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.37 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.38 5
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.39 Pf1N1B4_1927 DNA recombination and repair protein RecF low > 87
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.39 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.39 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas simiae WCS417 0.45 PS417_19950 ATP-dependent DNA helicase RecQ 0.37 PS417_00015 recombinase RecF low > 88
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS14585 DNA helicase RecQ 0.19 HMPREF1058_RS17135 DNA replication and repair protein RecF low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20865 DNA helicase RecQ 0.18 ABZR88_RS21650 DNA replication/repair protein RecF low > 71
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.24 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.39 AO353_10480 recombinase RecF 0.46 6
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS10235 DNA helicase RecQ 0.18 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.37 Psest_0004 recF protein 0.61 3
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.39 Psyr_0003 DNA replication and repair protein RecF 0.38 24
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.39 Psyr_0003 DNA replication and repair protein RecF 0.57 1
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.24 ABZR86_RS15145 DNA replication/repair protein RecF 0.36 40
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.24 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.28 HP15_3705 DNA replication and repair protein recF low > 73
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.16 Atu0073 recF-like protein low > 89
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.22 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.15 ABIE40_RS00200 DNA replication/repair protein RecF low > 107
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.38 OH686_12620 DNA recombination and repair protein RecF low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ 0.18 Echvi_1156 recF protein low > 79
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.10 AZOBR_RS17670 recombinase RecF 0.52 26
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.26 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Magnetospirillum magneticum AMB-1 0.42 AMB_RS21505 DNA helicase RecQ 0.12 AMB_RS03285 DNA replication and repair protein RecF — —
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.14 SMc02863 recombination protein F low > 103
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14110 DNA helicase RecQ 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Rhodopseudomonas palustris CGA009 0.42 TX73_025080 DNA helicase RecQ 0.13 TX73_000015 DNA replication/repair protein RecF low > 86
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.12 PGA1_c00030 DNA replication and repair protein RecF low > 62
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.12 MPMX19_02716 DNA replication and repair protein RecF — —
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.17 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.41 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.17 BACOVA_05088 DNA replication and repair protein RecF low > 94
Dinoroseobacter shibae DFL-12 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.10 Dshi_3375 SMC domain protein (RefSeq) 0.64 5
Lysobacter sp. OAE881 0.41 ABIE51_RS05145 DNA helicase RecQ 0.24 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01195 DNA helicase RecQ 0.16 HMPREF1078_RS14620 DNA replication and repair protein RecF low > 61
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.10 Rru_A0003 RecF protein (NCBI) — —
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.16 ABIE41_RS04170 DNA replication/repair protein RecF low > 77
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS08905 DNA helicase RecQ 0.17 CA265_RS24760 DNA replication and repair protein RecF low > 88
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.13 Ga0059261_2727 DNA replication and repair protein RecF — —
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS14575 DNA helicase RecQ 0.08 A4249_RS15360 DNA replication/repair protein RecF low > 48
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.18 HUW76_00025 DNA replication/repair protein RecF — —
Bifidobacterium breve UCC2003 0.34 BBR_RS13150 DNA helicase RecQ 0.12 BBR_RS10265 DNA replication and repair protein RecF low > 34
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.11 CCNA_00158 DNA replication and repair protein recF low > 67
Caulobacter crescentus NA1000 0.33 CCNA_03578 ATP-dependent DNA helicase recQ 0.11 CCNA_00158 DNA replication and repair protein recF 0.71 10

Not shown: 17 genomes with orthologs for b3822 only; 4 genomes with orthologs for b3700 only