Conservation of cofitness between b3752 and b3644 in Escherichia coli BW25113

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3752 rbsK ribokinase (NCBI) 1.0 b3644 yicC hypothetical protein (NCBI) 0.45 19
Escherichia coli ECRC98 1.00 JDDGAC_18350 rbsK ribokinase 0.99 JDDGAC_19210 yicC UPF0701 protein YicC — —
Escherichia coli ECRC102 1.00 NIAGMN_12485 rbsK ribokinase 1.00 NIAGMN_13345 yicC UPF0701 protein YicC — —
Escherichia coli ECRC99 1.00 KEDOAH_13420 rbsK ribokinase 1.00 KEDOAH_12560 yicC UPF0701 protein YicC — —
Escherichia coli ECRC101 1.00 OKFHMN_14730 rbsK ribokinase 1.00 OKFHMN_15585 yicC UPF0701 protein YicC — —
Escherichia coli ECRC101 1.00 MCAODC_05235 rbsK ribokinase 1.00 MCAODC_06095 yicC UPF0701 protein YicC — —
Escherichia coli ECOR27 1.00 NOLOHH_06865 rbsK ribokinase 1.00 NOLOHH_07465 yicC UPF0701 protein YicC low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04301 Ribokinase 1.00 OHPLBJKB_00058 hypothetical protein low > 73
Escherichia coli ECRC62 1.00 BNILDI_04660 rbsK ribokinase 1.00 BNILDI_04050 yicC UPF0701 protein YicC — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21570 ribokinase 0.99 ECOLIN_RS20760 YicC/YloC family endoribonuclease low > 52
Escherichia fergusonii Becca 1.00 EFB2_04881 Ribokinase 0.99 EFB2_00169 hypothetical protein low > 86
Escherichia coli BL21 1.00 ECD_03638 ribokinase 1.00 ECD_03501 UPF0701 family protein low > 60
Escherichia coli ECOR38 0.99 HEPCGN_13440 rbsK ribokinase 1.00 HEPCGN_14405 yicC UPF0701 protein YicC low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF1705 Ribokinase (EC 2.7.1.15) 0.94 GFF365 Protein YicC low > 78
Enterobacter sp. TBS_079 0.80 MPMX20_04615 Ribokinase 0.95 MPMX20_00091 hypothetical protein 0.50 15
Klebsiella michiganensis M5al 0.80 BWI76_RS00290 Ribokinase (EC 2.7.1.15) (from data) 0.94 BWI76_RS27395 hypothetical protein low > 92
Enterobacter asburiae PDN3 0.77 EX28DRAFT_4028 ribokinase 0.92 EX28DRAFT_3894 TIGR00255 family protein low > 76
Serratia liquefaciens MT49 0.71 IAI46_25055 ribokinase 0.89 IAI46_24855 YicC family protein low > 86
Rahnella sp. WP5 0.71 EX31_RS06190 ribokinase 0.82 EX31_RS14510 YicC family protein 0.39 69
Pectobacterium carotovorum WPP14 0.70 HER17_RS21530 ribokinase 0.87 HER17_RS20905 YicC family protein 0.87 32
Pantoea sp. MT58 0.70 IAI47_00370 ribokinase 0.87 IAI47_00580 YicC family protein low > 76
Dickeya dadantii 3937 0.70 DDA3937_RS00050 ribokinase 0.86 DDA3937_RS20645 YicC family protein low > 74
Dickeya dianthicola 67-19 0.69 HGI48_RS21315 ribokinase 0.85 HGI48_RS00540 YicC family protein low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS22295 ribokinase 0.86 DZA65_RS00575 YicC family protein 0.59 5
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_14665 ribokinase 0.68 CSW01_01110 YicC family protein low > 62
Shewanella sp. ANA-3 0.43 Shewana3_3477 ribokinase (RefSeq) 0.64 Shewana3_3778 hypothetical protein (RefSeq) low > 73
Bacteroides ovatus ATCC 8483 0.43 BACOVA_02050 ribokinase 0.18 BACOVA_01437 hypothetical protein low > 94
Shewanella loihica PV-4 0.42 Shew_0696 ribokinase (RefSeq) 0.66 Shew_3489 hypothetical protein (RefSeq) low > 60
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS08685 ribokinase 0.19 HMPREF1078_RS10050 YicC family protein — —
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS02060 ribokinase 0.19 HMPREF1181_RS07870 YicC family protein low > 56
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_2155 Carbohydrate kinase, PfkB 0.45 Psyr_0212 Conserved hypothetical protein 255 low > 86
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_2155 Carbohydrate kinase, PfkB 0.45 Psyr_0212 Conserved hypothetical protein 255 low > 86
Shewanella oneidensis MR-1 0.39 SO0810 rbsK ribokinase (NCBI ptt file) 0.64 SO4257 conserved hypothetical protein TIGR00255 (NCBI ptt file) low > 76
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS20695 ribokinase 0.32 BPHYT_RS15320 hypothetical protein low > 109
Ralstonia solanacearum GMI1000 0.37 RS_RS05015 ribokinase 0.34 RS_RS10815 YicC family protein — —
Pseudomonas sp. RS175 0.37 PFR28_02733 Ribokinase 0.46 PFR28_04421 hypothetical protein — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS35905 ribokinase 0.32 QEN71_RS03650 YicC/YloC family endoribonuclease low > 153
Ralstonia solanacearum PSI07 0.36 RPSI07_RS19230 ribokinase 0.34 RPSI07_RS13855 YicC family protein low > 81
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS09950 ribokinase 0.34 ABZR87_RS15240 YicC/YloC family endoribonuclease low > 80
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS14235 ribokinase 0.33 RALBFv3_RS03330 YicC family protein — —
Ralstonia solanacearum UW163 0.35 UW163_RS11700 ribokinase 0.33 UW163_RS10390 YicC family protein — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS11500 Ribokinase (EC 2.7.1.15) (from data) 0.38 HSERO_RS10650 hypothetical protein low > 78
Pseudomonas simiae WCS417 0.34 PS417_18385 ribokinase 0.46 PS417_27815 hypothetical protein — —
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_165 Ribokinase (EC 2.7.1.15) 0.45 Pf6N2E2_4364 Protein YicC low > 103
Bacteroides thetaiotaomicron VPI-5482 0.34 BT2803 ribokinase (EC 2.7.1.15) (from data) 0.20 BT_2008 hypothetical protein (RefSeq) low > 81
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS15070 ribokinase 0.42 ABZR86_RS11895 YicC/YloC family endoribonuclease low > 74
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_20835 Ribokinase (EC 2.7.1.15) (from data) 0.47 AO353_09265 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) (from data) 0.46 Pf1N1B4_2116 Protein YicC — —
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_00950 Ribokinase (EC 2.7.1.15) (from data) 0.46 AO356_12495 hypothetical protein low > 104
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05229 ribokinase 0.32 H281DRAFT_04007 TIGR00255 family protein low > 103
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3908 Ribokinase (EC 2.7.1.15) 0.46 PfGW456L13_783 Protein YicC low > 87
Rhodanobacter denitrificans MT42 0.32 LRK55_RS08275 ribokinase 0.41 LRK55_RS11475 YicC family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS08510 ribokinase 0.41 LRK54_RS11750 YicC family protein low > 59
Pseudomonas putida KT2440 0.32 PP_2458 ribokinase 0.47 PP_5295 conserved protein of unknown function low > 96
Azospirillum sp. SherDot2 0.32 MPMX19_02769 Ribokinase 0.25 MPMX19_00983 hypothetical protein — —
Paraburkholderia graminis OAS925 0.32 ABIE53_002321 ribokinase 0.32 ABIE53_003233 uncharacterized protein (TIGR00255 family) low > 113
Pseudomonas fluorescens SBW25 0.32 PFLU_RS20360 ribokinase 0.46 PFLU_RS29495 YicC family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS20360 ribokinase 0.46 PFLU_RS29495 YicC family protein low > 109
Variovorax sp. SCN45 0.32 GFF2136 Ribokinase (EC 2.7.1.15) 0.26 GFF2378 UPF0701 protein YicC — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1976 PfkB domain protein (RefSeq) 0.29 Dshi_1528 domain of unknown function DUF1732 (RefSeq) low > 64
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_15305 rbsK ribokinase 0.41 OKGIIK_12145 yicC YicC-like family, N-terminal region — —
Variovorax sp. OAS795 0.30 ABID97_RS24775 ribokinase 0.26 ABID97_RS23655 YicC/YloC family endoribonuclease — —
Agrobacterium fabrum C58 0.29 Atu4847 ribokinase 0.23 Atu1100 hypothetical protein low > 89
Rhodospirillum rubrum S1H 0.29 Rru_A2297 Ribokinase (NCBI) 0.25 Rru_A0428 hypothetical protein (NCBI) — —
Acidovorax sp. GW101-3H11 0.29 Ac3H11_1839 Ribokinase (EC 2.7.1.15) 0.24 Ac3H11_3667 Protein YicC — —
Lysobacter sp. OAE881 0.27 ABIE51_RS16435 ribokinase 0.45 ABIE51_RS17280 YicC/YloC family endoribonuclease low > 62
Rhizobium sp. OAE497 0.27 ABIE40_RS01880 ribokinase 0.26 ABIE40_RS06380 YicC/YloC family endoribonuclease low > 107
Sinorhizobium meliloti 1021 0.27 SMc01103 Ribokinase (EC 2.7.1.15) (from data) 0.26 SMc00576 hypothetical protein low > 103
Alteromonas macleodii MIT1002 0.26 MIT1002_02988 Ribokinase 0.69 MIT1002_04072 hypothetical protein low > 70
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4302.1 Ribokinase (EC 2.7.1.15) 0.41 Xcc-8004.1220.1 Protein YicC low > 74
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_03275 ribokinase 0.20 CA264_14585 YicC family protein low > 74
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_01001 ribokinase 0.23 CCNA_01752 YicC-family protein low > 67
Caulobacter crescentus NA1000 0.24 CCNA_01001 ribokinase 0.23 CCNA_01752 YicC-family protein low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS15765 ribokinase 0.23 A4249_RS06780 YicC family protein low > 48
Bosea sp. OAE506 0.22 ABIE41_RS03745 ribokinase 0.24 ABIE41_RS17740 YicC/YloC family endoribonuclease low > 77
Phaeobacter inhibens DSM 17395 0.16 PGA1_c34980 putative pfkB family carbohydrate kinase 0.30 PGA1_c15840 TIGR00255 family protein low > 62
Erwinia tracheiphila SCR3 0.14 LU632_RS03295 aminoimidazole riboside kinase 0.81 LU632_RS22050 YicC family protein 0.66 24
Magnetospirillum magneticum AMB-1 0.11 AMB_RS16380 carbohydrate kinase family protein 0.28 AMB_RS03835 YicC family protein low > 64
Phocaeicola vulgatus CL09T03C04 0.10 HMPREF1058_RS00630 carbohydrate kinase 0.18 HMPREF1058_RS00515 YicC family protein low > 67

Not shown: 3 genomes with orthologs for b3752 only; 18 genomes with orthologs for b3644 only