Conservation of cofitness between b4015 and b0723 in Escherichia coli BW25113

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4015 aceA isocitrate lyase (NCBI) 1.0 b0723 sdhA succinate dehydrogenase flavoprotein subunit (NCBI) 0.22 12
Escherichia coli Nissle 1917 1.00 ECOLIN_RS26870 isocitrate lyase 1.00 ECOLIN_RS03855 succinate dehydrogenase flavoprotein subunit — —
Escherichia coli ECRC62 1.00 BNILDI_06110 aceA isocitrate lyase 1.00 BNILDI_21320 sdhA succinate dehydrogenase flavoprotein subunit — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04035 Isocitrate lyase 1.00 OHPLBJKB_02993 Succinate dehydrogenase flavoprotein subunit low > 73
Escherichia coli ECOR38 1.00 HEPCGN_11905 aceA isocitrate lyase 1.00 HEPCGN_01295 sdhA succinate dehydrogenase flavoprotein subunit low > 85
Escherichia coli ECOR27 1.00 NOLOHH_05410 aceA isocitrate lyase 1.00 NOLOHH_23325 sdhA succinate dehydrogenase flavoprotein subunit low > 57
Escherichia coli BL21 1.00 ECD_03887 isocitrate lyase 1.00 ECD_00683 succinate dehydrogenase, flavoprotein subunit low > 60
Escherichia fergusonii Becca 1.00 EFB2_04595 Isocitrate lyase 1.00 EFB2_03382 Succinate dehydrogenase flavoprotein subunit low > 86
Escherichia coli ECRC98 1.00 JDDGAC_16890 aceA isocitrate lyase 1.00 JDDGAC_10595 sdhA succinate dehydrogenase flavoprotein subunit — —
Escherichia coli ECRC101 1.00 MCAODC_03765 aceA isocitrate lyase 1.00 MCAODC_26160 sdhA succinate dehydrogenase flavoprotein subunit — —
Escherichia coli ECRC101 1.00 OKFHMN_13265 aceA isocitrate lyase 1.00 OKFHMN_06940 sdhA succinate dehydrogenase flavoprotein subunit — —
Escherichia coli ECRC102 1.00 NIAGMN_11015 aceA isocitrate lyase 1.00 NIAGMN_04990 sdhA succinate dehydrogenase flavoprotein subunit — —
Escherichia coli ECRC99 1.00 KEDOAH_14895 aceA isocitrate lyase 1.00 KEDOAH_21025 sdhA succinate dehydrogenase flavoprotein subunit — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF1352 Isocitrate lyase (EC 4.1.3.1) 0.93 GFF4637 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) (from data) 0.93 BWI76_RS08405 succinate dehydrogenase flavoprotein subunit low > 92
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4329 isocitrate lyase 0.94 EX28DRAFT_2268 succinate dehydrogenase subunit A (EC 1.3.5.1) low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_00232 Isocitrate lyase 0.94 MPMX20_01352 Succinate dehydrogenase flavoprotein subunit low > 85
Pectobacterium carotovorum WPP14 0.89 HER17_RS02295 isocitrate lyase 0.91 HER17_RS14940 succinate dehydrogenase flavoprotein subunit low > 75
Dickeya dianthicola 67-19 0.89 HGI48_RS19145 isocitrate lyase 0.91 HGI48_RS06490 succinate dehydrogenase flavoprotein subunit low > 71
Dickeya dianthicola ME23 0.88 DZA65_RS20265 isocitrate lyase 0.91 DZA65_RS06835 succinate dehydrogenase flavoprotein subunit low > 75
Dickeya dadantii 3937 0.88 DDA3937_RS19055 isocitrate lyase 0.92 DDA3937_RS06450 succinate dehydrogenase flavoprotein subunit low > 74
Serratia liquefaciens MT49 0.87 IAI46_23190 isocitrate lyase 0.92 IAI46_06265 succinate dehydrogenase flavoprotein subunit low > 86
Rahnella sp. WP5 0.87 EX31_RS11745 isocitrate lyase 0.89 EX31_RS23430 succinate dehydrogenase flavoprotein subunit low > 89
Pantoea sp. MT58 0.84 IAI47_18005 isocitrate lyase 0.89 IAI47_13755 succinate dehydrogenase flavoprotein subunit 0.31 46
Shewanella loihica PV-4 0.83 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) 0.76 Shew_1653 sdhA succinate dehydrogenase flavoprotein subunit (RefSeq) — —
Shewanella amazonensis SB2B 0.83 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) 0.77 Sama_1425 sdhA succinate dehydrogenase flavoprotein subunit (RefSeq) — —
Shewanella oneidensis MR-1 0.82 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) 0.77 SO1928 sdhA succinate dehydrogenase, flavoprotein subunit (NCBI ptt file) — —
Shewanella sp. ANA-3 0.82 Shewana3_2942 isocitrate lyase (RefSeq) 0.77 Shewana3_1708 sdhA succinate dehydrogenase flavoprotein subunit (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.80 CSW01_03830 isocitrate lyase 0.81 CSW01_10440 succinate dehydrogenase flavoprotein subunit low > 62
Dechlorosoma suillum PS 0.75 Dsui_0011 isocitrate lyase 0.55 Dsui_2213 succinate dehydrogenase, flavoprotein subunit — —
Variovorax sp. OAS795 0.75 ABID97_RS11115 isocitrate lyase 0.55 ABID97_RS08495 succinate dehydrogenase flavoprotein subunit — —
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS18610 isocitrate lyase 0.66 PFLU_RS08945 succinate dehydrogenase flavoprotein subunit — —
Pseudomonas fluorescens SBW25 0.74 PFLU_RS18610 isocitrate lyase 0.66 PFLU_RS08945 succinate dehydrogenase flavoprotein subunit — —
Pseudomonas simiae WCS417 0.74 PS417_16570 isocitrate lyase 0.67 PS417_08885 succinate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_27735 isocitrate lyase 0.67 AO353_01845 succinate dehydrogenase — —
Variovorax sp. SCN45 0.74 GFF4829 Isocitrate lyase (EC 4.1.3.1) 0.55 GFF3897 Succinate dehydrogenase flavoprotein subunit (EC 1.3.5.1) — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) 0.66 PfGW456L13_4271 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.74 GFF4147 Isocitrate lyase (EC 4.1.3.1) 0.54 GFF3368 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_3196 isocitrate lyase 0.69 Psyr_2007 succinate dehydrogenase subunit A — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) 0.67 Pf1N1B4_3679 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) — —
Pseudomonas sp. RS175 0.74 PFR28_02625 Isocitrate lyase 0.66 PFR28_03098 Succinate dehydrogenase flavoprotein subunit — —
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_3196 isocitrate lyase 0.69 Psyr_2007 succinate dehydrogenase subunit A — —
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_22080 isocitrate lyase 0.67 AO356_19685 succinate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) 0.67 Pf6N2E2_5853 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) — —
Acidovorax sp. GW101-3H11 0.73 Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) (from data) 0.55 Ac3H11_3158 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) — —
Pseudomonas putida KT2440 0.73 PP_4116 isocitrate lyase 0.66 PP_4191 succinate dehydrogenase flavoprotein subunit — —
Castellaniella sp019104865 MT123 0.71 ABCV34_RS06915 isocitrate lyase 0.55 ABCV34_RS01695 succinate dehydrogenase flavoprotein subunit — —
Paraburkholderia graminis OAS925 0.69 ABIE53_002536 isocitrate lyase 0.55 ABIE53_004880 succinate dehydrogenase / fumarate reductase flavoprotein subunit — —
Lysobacter sp. OAE881 0.69 ABIE51_RS00190 isocitrate lyase 0.49 ABIE51_RS12520 succinate dehydrogenase flavoprotein subunit — —
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS06270 isocitrate lyase 0.55 QEN71_RS38670 succinate dehydrogenase flavoprotein subunit — —
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS10565 isocitrate lyase 0.55 HSERO_RS14905 succinate dehydrogenase flavoprotein subunit — —
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS12200 isocitrate lyase 0.55 RR42_RS14445 fumarate reductase — —
Rhodanobacter denitrificans MT42 0.68 LRK55_RS10225 isocitrate lyase 0.49 LRK55_RS07215 succinate dehydrogenase flavoprotein subunit low > 63
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.311.1 Isocitrate lyase (EC 4.1.3.1) 0.48 Xcc-8004.2458.1 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) — —
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS10585 isocitrate lyase 0.49 LRK54_RS07475 succinate dehydrogenase flavoprotein subunit low > 59
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS12285 isocitrate lyase 0.55 BPHYT_RS33935 succinate dehydrogenase flavoprotein subunit — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_13320 aceA isocitrate lyase 0.49 OKGIIK_08480 sdhA succinate dehydrogenase flavoprotein subunit — —
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS13490 isocitrate lyase 0.50 ABZR86_RS06335 succinate dehydrogenase flavoprotein subunit — —
Ralstonia solanacearum UW163 0.67 UW163_RS13480 isocitrate lyase 0.55 UW163_RS11085 succinate dehydrogenase flavoprotein subunit — —
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS00150 isocitrate lyase 0.55 RALBFv3_RS02640 succinate dehydrogenase flavoprotein subunit — —
Ralstonia solanacearum PSI07 0.67 RPSI07_RS17335 isocitrate lyase 0.55 RPSI07_RS14675 succinate dehydrogenase flavoprotein subunit — —
Ralstonia solanacearum GMI1000 0.66 RS_RS06810 isocitrate lyase 0.55 RS_RS10020 succinate dehydrogenase flavoprotein subunit — —
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS11590 isocitrate lyase 0.55 ABZR87_RS14560 succinate dehydrogenase flavoprotein subunit — —
Azospirillum sp. SherDot2 0.59 MPMX19_05830 Isocitrate lyase 0.48 MPMX19_02409 Succinate dehydrogenase flavoprotein subunit — —
Mycobacterium tuberculosis H37Rv 0.59 Rv0467 Isocitrate lyase Icl (isocitrase) (isocitratase) 0.43 Rv3318 Probable succinate dehydrogenase (flavoprotein subunit) SdhA (succinic dehydrogenase) (fumarate reductase) (fumarate dehydrogenase) (fumaric hydrogenase) — —
Sinorhizobium meliloti 1021 0.57 SMc00768 isocitrate lyase 0.46 SMc02465 succinate dehydrogenase flavoprotein subunit — —
Rhizobium sp. OAE497 0.57 ABIE40_RS03255 isocitrate lyase 0.47 ABIE40_RS18020 succinate dehydrogenase flavoprotein subunit — —
Agrobacterium fabrum C58 0.57 Atu0607 isocitrate lyase 0.47 Atu2643 succinate dehydrogenase flavoprotein subunit — —
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS02595 isocitrate lyase 0.50 A4249_RS13430 succinate dehydrogenase flavoprotein subunit — —
Caulobacter crescentus NA1000 0.17 CCNA_01841 isocitrate lyase 0.47 CCNA_03642 succinate dehydrogenase flavoprotein subunit — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_01841 isocitrate lyase 0.47 CCNA_03642 succinate dehydrogenase flavoprotein subunit — —
Acinetobacter radioresistens SK82 0.16 MPMX26_02319 Isocitrate lyase 0.52 MPMX26_00749 Succinate dehydrogenase flavoprotein subunit — —
Alteromonas macleodii MIT1002 0.16 MIT1002_02831 Isocitrate lyase 0.80 MIT1002_01946 Succinate dehydrogenase flavoprotein subunit — —
Rhodopseudomonas palustris CGA009 0.15 TX73_022775 isocitrate lyase 0.50 TX73_001125 succinate dehydrogenase flavoprotein subunit — —
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_1963 Isocitrate lyase 0.51 Ga0059261_1330 succinate dehydrogenase subunit A (EC 1.3.5.1) — —

Not shown: 3 genomes with orthologs for b4015 only; 11 genomes with orthologs for b0723 only