| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Mycobacterium tuberculosis H37Rv | Rv3133c | | Two component transcriptional regulatory protein DevR (probably LuxR/UhpA-family) | sig. | 100 | 100 |
| o | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS16955 | | response regulator transcription factor | insig. | 39 | 94 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS11330 | | response regulator transcription factor | insig. | 39 | 96 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS11600 | | response regulator transcription factor | insig. | 39 | 96 |
| o | Kangiella aquimarina DSM 16071 | B158DRAFT_1737 | | two component transcriptional regulator, LuxR family | insig. | 35 | 94 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS14195 | | response regulator transcription factor | no data | 38 | 95 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS14480 | | response regulator transcription factor | strong | 38 | 95 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS14100 | | response regulator transcription factor | insig. | 38 | 95 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_03330 | citB | DNA-binding response regulator | insig. | 38 | 95 |
| o | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS21335 | | response regulator transcription factor | sig. | 39 | 95 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1128 | | Two-component response regulator | insig. | 37 | 100 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS08905 | | XRE family transcriptional regulator | insig. | 37 | 93 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03209 | | Transcriptional regulatory protein LnrK | cofit | 38 | 93 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS14300 | | response regulator transcription factor | no data | 37 | 93 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS14300 | | response regulator transcription factor | sig. | 37 | 93 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS00785 | | LuxR family transcriptional regulator | insig. | 36 | 95 |
| o | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3859.1 | | Two-component system regulatory protein | sig. | 37 | 96 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_26265 | | LuxR family transcriptional regulator | no data | 37 | 100 |
| o | Pseudomonas sp. RS175 | PFR28_01868 | | Transcriptional regulatory protein DegU | no data | 37 | 100 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | no data | 37 | 93 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | no data | 37 | 93 |
| o | Methylophilus sp. DMC18 | GFF606 | | Nitrate/nitrite response regulator protein NarL | insig. | 34 | 95 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5052 | | Two-component response regulator | no data | 37 | 93 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS10275 | | LuxR family transcriptional regulator | sig. | 35 | 95 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS12850 | | LuxR family transcriptional regulator | strong | 36 | 88 |
| o | Ralstonia solanacearum GMI1000 | RS_RS01435 | | DNA-binding response regulator | strong | 35 | 94 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS10600 | | DNA-binding response regulator | strong | 35 | 94 |
| o | Ralstonia solanacearum UW163 | UW163_RS02980 | | DNA-binding response regulator | strong | 35 | 94 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS22720 | | DNA-binding response regulator | strong | 35 | 94 |
| o | Variovorax sp. OAS795 | ABID97_RS28185 | | response regulator transcription factor | insig. | 32 | 93 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS06400 | | response regulator transcription factor | strong | 35 | 94 |
| o | Lysobacter sp. OAE881 | ABIE51_RS14590 | | response regulator transcription factor | sig. | 34 | 96 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS32890 | | response regulator transcription factor | insig. | 40 | 95 |
| o | Rhodopseudomonas palustris CGA009 | TX73_007655 | | response regulator transcription factor | cofit | 38 | 95 |
| | Pseudomonas sp. SVBP6 | COO64_RS14210 | narL | two-component system response regulator NarL | insig. | 36 | 96 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03153 | | two component transcriptional regulator, LuxR family | insig. | 38 | 96 |
| o | Rhizobium sp. OAE497 | ABIE40_RS27605 | | response regulator transcription factor | insig. | 35 | 93 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS33915 | | two-component system response regulator NarL | insig. | 36 | 99 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS18195 | | XRE family transcriptional regulator | insig. | 34 | 94 |
| o | Variovorax sp. SCN45 | GFF5818 | | Two-component transcriptional response regulator, NarL/FixJ family | insig. | 38 | 96 |
| | Rhizobium sp. OAE497 | ABIE40_RS23610 | | response regulator transcription factor | insig. | 36 | 93 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS13490 | narL;go_function=DNA | two-component system response regulator NarL | insig. | 36 | 94 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19985 | | two-component system response regulator NarL | no data | 36 | 94 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS48785 | narL;go_function=DNA | two-component system response regulator NarL | insig. | 36 | 94 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5823 | | Nitrate/nitrite response regulator protein | no data | 35 | 94 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_4489 | | Nitrate/nitrite response regulator protein | no data | 35 | 96 |
| o | Shewanella sp. ANA-3 | Shewana3_1152 | | two component LuxR family transcriptional regulator (RefSeq) | insig. | 33 | 95 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS15965 | | response regulator transcription factor | insig. | 31 | 94 |
| | Methylophilus sp. DMC18 | GFF88 | | Response regulator UvrY | insig. | 33 | 93 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS22230 | | LuxR family transcriptional regulator | sig. | 39 | 97 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08855 | | response regulator transcription factor | strong | 36 | 94 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS05230 | | response regulator transcription factor | insig. | 36 | 97 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS16725 | | two-component system response regulator NarL | insig. | 34 | 94 |
| | Pantoea sp. MT58 | IAI47_04245 | | two-component system response regulator NarL | sig. | 34 | 94 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS18540 | | DNA-binding response regulator | cofit | 36 | 94 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS11285 | | response regulator transcription factor | strong | 34 | 94 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS23850 | | DNA-binding response regulator | cofit | 35 | 97 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS09500 | | DNA-binding response regulator | insig. | 35 | 97 |
| | Ralstonia solanacearum UW163 | UW163_RS04080 | | DNA-binding response regulator | insig. | 35 | 97 |
| o | Bifidobacterium breve UCC2003 | BBR_RS14610 | | DNA-binding response regulator | strong | 30 | 94 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3685 | | DNA-binding response regulator, LuxR family | insig. | 36 | 94 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06675 | | DNA-binding response regulator | insig. | 34 | 94 |
| | Lysobacter sp. OAE881 | ABIE51_RS10620 | | response regulator transcription factor | insig. | 34 | 94 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_06455 | | DNA-binding response regulator | insig. | 30 | 94 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1897 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | strong | 30 | 88 |
| | Variovorax sp. OAS795 | ABID97_RS22515 | | response regulator transcription factor | strong | 37 | 96 |
| | Lysobacter sp. OAE881 | ABIE51_RS10320 | | response regulator transcription factor | insig. | 33 | 94 |
| o | Dechlorosoma suillum PS | Dsui_3469 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | cofit | 32 | 98 |
| | Serratia liquefaciens MT49 | IAI46_18680 | | two-component system response regulator NarL | insig. | 32 | 94 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01334 | | two component transcriptional regulator, LuxR family | no data | 38 | 95 |
| o | Paraburkholderia graminis OAS925 | ABIE53_005478 | | two-component system invasion response regulator UvrY | sig. | 38 | 95 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_1272 | | two component transcriptional regulator, LuxR family | strong | 35 | 90 |
| | Ralstonia solanacearum GMI1000 | RS_RS00100 | | DNA-binding response regulator | strong | 35 | 97 |
| o | Sinorhizobium meliloti 1021 | SM_b21520 | | two-component response regulator protein | insig. | 34 | 97 |
| o | Castellaniella sp019104865 MT123 | ABCV34_RS08970 | | response regulator transcription factor | insig. | 34 | 95 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08760 | | XRE family transcriptional regulator | no data | 33 | 94 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03428 | | Nitrate/nitrite response regulator protein NarL | cofit | 34 | 96 |
| o | Desulfovibrio vulgaris Miyazaki F | DvMF_1021 | | two component transcriptional regulator, LuxR family (RefSeq) | strong | 34 | 94 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS16770 | | DNA-binding response regulator | insig. | 34 | 94 |
| | Ralstonia solanacearum UW163 | UW163_RS18125 | | DNA-binding response regulator | insig. | 34 | 94 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_24485 | | regulator | insig. | 33 | 90 |
| o | Pseudomonas stutzeri RCH2 | Psest_2048 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | strong | 34 | 95 |
| | Ralstonia solanacearum GMI1000 | RS_RS11600 | | DNA-binding response regulator | insig. | 33 | 99 |
| | Lysobacter sp. OAE881 | ABIE51_RS10325 | | response regulator transcription factor | insig. | 33 | 94 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22075 | | hypothetical protein | strong | 33 | 95 |
| o | Pseudomonas sp. BP01 | JOY50_RS23985 | | response regulator transcription factor | insig. | 38 | 88 |
| o | Pseudomonas putida KT2440 | PP_1090 | | putative Virulence factors positive transcription regulator BvgA | insig. | 38 | 88 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5741 | | Nitrate/nitrite response regulator protein | no data | 33 | 96 |
| o | Shewanella oneidensis MR-1 | SO3982 | narP | DNA-binding nitrate/nitrite response regulator (NCBI ptt file) | sig. | 32 | 92 |
| | Variovorax sp. SCN45 | GFF4727 | | Two-component transcriptional response regulator, LuxR family | insig. | 31 | 96 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS14245 | | response regulator transcription factor | insig. | 35 | 95 |
| | Pseudomonas sp. RS175 | PFR28_01628 | | Nitrate/nitrite response regulator protein NarL | insig. | 33 | 95 |
| | Pseudomonas sp. SVBP6 | COO64_RS09150 | | response regulator transcription factor | insig. | 33 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4833 | | DNA-binding response regulator, LuxR family | sig. | 34 | 90 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1296 | | DNA-binding response regulator, LuxR family | strong | 33 | 95 |
| | Variovorax sp. SCN45 | GFF850 | | Two-component transcriptional response regulator, LuxR family | insig. | 34 | 92 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_25185 | | hypothetical protein | sig. | 33 | 95 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_725 | | Nitrate/nitrite response regulator protein | strong | 33 | 95 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3272 | | DNA-binding response regulator, LuxR family | insig. | 39 | 98 |
| | Lysobacter sp. OAE881 | ABIE51_RS00905 | | response regulator transcription factor | insig. | 36 | 95 |