Homologs of Psyr_0208 from Pseudomonas syringae pv. syringae B728a

endoribonuclease L-PSP
SEED: Bona fide RidA/YjgF/TdcF/RutC subgroup
KEGG: TdcF protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_0208 endoribonuclease L-PSP strong 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0208 endoribonuclease L-PSP strong 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS29515 RidA family protein strong 91 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS29515 RidA family protein strong 91 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00035 2-iminobutanoate/2-iminopropanoate deaminase strong 91 100
o Pseudomonas simiae WCS417 PS417_27835 endoribonuclease strong 91 100
o Pseudomonas sp. RS175 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase strong 90 100
o Pseudomonas sp. BP01 JOY50_RS08980 RidA family protein cofit 90 100
o Pseudomonas sp. DMC3 GFF420 2-iminobutanoate/2-iminopropanoate deaminase strong 90 100
o Pseudomonas fluorescens FW300-N2C3 AO356_12475 reactive intermediate/imine deaminase strong 90 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 90 100
o Pseudomonas sp. SVBP6 COO64_RS01560 RidA family protein strong 90 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 90 100
o Pseudomonas fluorescens FW300-N2E3 AO353_09285 reactive intermediate/imine deaminase strong 90 100
o Pseudomonas putida KT2440 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase strong 89 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 89 100
o Pseudomonas segetis P6 MPMX49_00037 2-iminobutanoate/2-iminopropanoate deaminase strong 86 100
o Pseudomonas stutzeri RCH2 Psest_3818 endoribonuclease L-PSP, putative strong 83 100
o Pseudomonas sp. S08-1 OH686_13545 RidA/YER057c/UK114 superfamily protein strong 83 100
o Pseudomonas aeruginosa PA14 IKLFDK_26760 reactive intermediate/imine deaminase insig. 80 100
o Dechlorosoma suillum PS Dsui_0312 endoribonuclease L-PSP, putative no data 73 99
o Kangiella aquimarina DSM 16071 B158DRAFT_0573 endoribonuclease L-PSP, putative sig. 68 100
o Shewanella amazonensis SB2B Sama_0263 YjgF-like protein (RefSeq) strong 73 96
o Shewanella oneidensis MR-1 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) strong 69 96
o Acinetobacter baumannii LAC-4 RR41_RS01650 RidA family protein sig. 67 100
o Shewanella sp. ANA-3 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) cofit 69 96
o Acinetobacter radioresistens SK82 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase strong 65 99
o Alteromonas macleodii MIT1002 MIT1002_00109 Putative reactive intermediate deaminase TdcF strong 65 98
o Marinobacter adhaerens HP15 HP15_306 YjgF-like protein strong 65 98
o Shewanella loihica PV-4 Shew_3500 putative endoribonuclease L-PSP (RefSeq) strong 66 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS11845 RidA family protein strong 63 100
o Lysobacter sp. OAE881 ABIE51_RS17260 RidA family protein strong 62 100
o Rhodanobacter sp. FW510-T8 OKGIIK_12095 ridA reactive intermediate/imine deaminase cofit 58 100
o Rhodanobacter denitrificans MT42 LRK55_RS11525 RidA family protein cofit 58 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS11800 RidA family protein strong 58 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS16740 RidA family protein strong 59 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1205.1 hypothetical protein cofit 61 97
o Castellaniella sp019104865 MT123 ABCV34_RS03565 Rid family detoxifying hydrolase no data 51 99
o Desulfovibrio vulgaris Hildenborough JW710 DVU2647 endoribonuclease, L-PSP family (TIGR) sig. 50 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18400 RidA family protein strong 51 97
o Bacteroides ovatus ATCC 8483 BACOVA_00589 putative endoribonuclease L-PSP cofit 49 97
o Bacteroides thetaiotaomicron VPI-5482 BT1336 putative translation initiation inhibitor (NCBI ptt file) strong 49 97
o Phocaeicola dorei CL03T12C01 ABI39_RS14715 RidA family protein strong 50 97
o Bacteroides stercoris CC31F HMPREF1181_RS10885 RidA family protein strong 50 97
  Desulfovibrio vulgaris Hildenborough JW710 DVU2203 endoribonuclease, L-PSP family (TIGR) sig. 50 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS41190 RidA family protein no data 47 96
o Synechococcus elongatus PCC 7942 Synpcc7942_0972 YjgF-like protein strong 49 99
o Cellulophaga baltica 18 M666_RS12150 RidA family protein insig. 46 98
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22825 reactive intermediate/imine deaminase strong 45 98
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02020 RidA family protein insig. 45 98
o Azospirillum brasilense Sp245 AZOBR_RS32435 dfrA insig. 46 99
  Pseudomonas fluorescens FW300-N2E3 AO353_24440 reactive intermediate/imine deaminase insig. 46 96
  Pseudomonas fluorescens FW300-N2C3 AO356_16860 reactive intermediate/imine deaminase strong 46 98
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17245 RidA family protein no data 47 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5297 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein insig. 46 98
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1327 endoribonuclease L-PSP, putative sig. 46 98
o Fusobacterium nucleatum SB010 HUW76_10065 RidA family protein strong 46 97
o Rahnella sp. WP5 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase insig. 44 94
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF928 Endoribonuclease L-PSP strong 46 98
o Pantoea sp. MT58 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase strong 44 94
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08965 2-iminobutanoate/2-iminopropanoate deaminase strong 44 93
o Klebsiella michiganensis M5al BWI76_RS02985 reactive intermediate/imine deaminase strong 44 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_12735 RidA family protein cofit 45 98
o Dickeya dadantii 3937 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase insig. 43 95
o Klebsiella pneumoniae MKP103 KDGMDA_11455 2-iminobutanoate/2-iminopropanoate deaminase insig. 44 98
o Pectobacterium carotovorum WPP14 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase sig. 41 95
o Escherichia coli BL21 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification strong 44 98
o Escherichia fergusonii Becca EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase sig. 44 98
o Escherichia coli ECOR27 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase insig. 44 98
o Escherichia coli ECOR38 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase insig. 44 98
o Escherichia coli ECRC100 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase cofit 44 98
o Escherichia coli ECRC101 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase strong 44 98
o Escherichia coli ECRC102 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase strong 44 98
o Escherichia coli ECRC62 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase cofit 44 98
o Escherichia coli ECRC98 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase cofit 44 98
o Escherichia coli ECRC99 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase no data 44 98
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase insig. 44 98
o Escherichia coli Nissle 1917 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase insig. 44 98
o Escherichia coli BW25113 b4243 yjgF orf, hypothetical protein (VIMSS) strong 44 98
  Shewanella sp. ANA-3 Shewana3_2971 putative endoribonuclease L-PSP (RefSeq) sig. 44 95
o Enterobacter sp. TBS_079 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase sig. 43 98
  Shewanella oneidensis MR-1 SO1404 endoribonuclease L-PSP, putative (NCBI ptt file) insig. 42 97
o Dickeya dianthicola 67-19 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase no data 43 95
o Dickeya dianthicola ME23 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase insig. 43 95
  Escherichia coli BL21 ECD_02980 putative reactive intermediate deaminase insig. 41 97
  Escherichia fergusonii Becca EFB2_00701 Putative reactive intermediate deaminase TdcF insig. 41 97
  Escherichia coli ECOR27 NOLOHH_10200 tdcF enamine/imine deaminase insig. 41 97
  Escherichia coli ECOR38 HEPCGN_17255 tdcF enamine/imine deaminase insig. 41 97
  Escherichia coli ECRC100 OKFHMN_18420 tdcF enamine/imine deaminase insig. 41 97
  Escherichia coli ECRC101 MCAODC_08935 tdcF enamine/imine deaminase insig. 41 97
  Escherichia coli ECRC102 NIAGMN_16185 tdcF enamine/imine deaminase insig. 41 97
  Escherichia coli ECRC62 BNILDI_01325 tdcF enamine/imine deaminase insig. 41 97
  Escherichia coli ECRC98 JDDGAC_22055 tdcF enamine/imine deaminase insig. 41 97
  Escherichia coli ECRC99 KEDOAH_09725 tdcF enamine/imine deaminase no data 41 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00587 Putative reactive intermediate deaminase TdcF insig. 41 97
  Escherichia coli Nissle 1917 ECOLIN_RS17920 enamine/imine deaminase insig. 41 97
  Escherichia coli BW25113 b3113 yhaR orf, hypothetical protein (VIMSS) strong 41 97
  Desulfovibrio vulgaris Hildenborough JW710 DVU0620 endoribonuclease, L-PSP family (TIGR) insig. 43 91
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17590 RidA family protein sig. 43 97
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_14050 ridA 2-iminobutanoate/2-iminopropanoate deaminase no data 43 94