Homologs of PP_4010 from Pseudomonas putida KT2440

DNA replication inhibitor
SEED: Cold shock protein CspD
KEGG: cold shock protein (beta-ribbon, CspA family)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4010 DNA replication inhibitor strong 100 100
o Pseudomonas sp. BP01 JOY50_RS06565 cspD cold shock domain-containing protein CspD no data 92 100
o Pseudomonas sp. SVBP6 COO64_RS24210 cspD cold shock domain-containing protein CspD insig. 72 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2644 Cold shock protein CspD insig. 77 85
o Pseudomonas fluorescens FW300-N2E3 AO353_27685 cold-shock protein strong 71 98
o Pseudomonas sp. S08-1 OH686_00225 cold shock domain protein CspD insig. 68 100
o Pseudomonas simiae WCS417 PS417_16520 cold-shock protein insig. 72 94
o Pseudomonas segetis P6 MPMX49_02543 Cold shock-like protein CspD insig. 66 100
o Pseudomonas fluorescens SBW25 PFLU_RS18560 cold shock domain-containing protein CspD insig. 71 95
o Pseudomonas fluorescens SBW25-INTG PFLU_RS18560 cold shock domain-containing protein CspD insig. 71 95
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03631 hypothetical protein insig. 76 81
o Pseudomonas stutzeri RCH2 Psest_2025 cold shock domain protein CspD strong 70 88
  Pseudomonas aeruginosa PA14 IKLFDK_13160 cold shock domain-containing protein CspD insig. 81 73
o Pseudomonas sp. DMC3 GFF1523 Cold shock-like protein CspD cofit 66 88
  Pseudomonas sp. RS175 PFR28_02615 hypothetical protein insig. 81 70
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4053 Cold shock protein CspD insig. 64 88
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_290 Cold shock protein CspD insig. 74 76
  Pseudomonas fluorescens FW300-N2C3 AO356_22140 cold-shock protein insig. 73 75
o Pseudomonas syringae pv. syringae B728a Psyr_3185 cold-shock DNA-binding protein family no data 64 86
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3185 cold-shock DNA-binding protein family no data 64 86
  Marinobacter adhaerens HP15 HP15_2082 cold-shock DNA-binding domain protein cofit 73 73
o Pectobacterium carotovorum WPP14 HER17_RS12410 cold shock-like protein CspD insig. 67 82
o Klebsiella michiganensis M5al BWI76_RS09605 cold-shock protein no data 64 85
  Vibrio cholerae E7946 ATCC 55056 CSW01_05795 cold-shock protein CspD insig. 70 69
o Klebsiella pneumoniae MKP103 KDGMDA_17850 cold shock-like protein CspD no data 65 82
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4903 Cold shock protein CspD no data 64 82
o Escherichia coli BL21 ECD_00885 inhibitor of DNA replication, cold shock protein-like protein no data 64 84
o Escherichia fergusonii Becca EFB2_03181 Cold shock-like protein CspD insig. 64 84
o Escherichia coli ECOR27 NOLOHH_22195 cspD cold shock-like protein CspD insig. 64 84
o Escherichia coli ECOR38 HEPCGN_22885 cspD cold shock-like protein CspD insig. 64 84
o Escherichia coli ECRC100 OKFHMN_05800 cspD cold shock-like protein CspD no data 64 84
o Escherichia coli ECRC101 MCAODC_25015 cspD cold shock-like protein CspD insig. 64 84
o Escherichia coli ECRC102 NIAGMN_03840 cspD cold shock-like protein CspD insig. 64 84
o Escherichia coli ECRC62 BNILDI_20450 cspD cold shock-like protein CspD insig. 64 84
o Escherichia coli ECRC98 JDDGAC_09435 cspD cold shock-like protein CspD insig. 64 84
o Escherichia coli ECRC99 KEDOAH_22110 cspD cold shock-like protein CspD no data 64 84
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02788 Cold shock-like protein CspD no data 64 84
o Escherichia coli Nissle 1917 ECOLIN_RS04685 cold shock-like protein CspD no data 64 84
o Escherichia coli BW25113 b0880 cspD cold shock protein homolog (NCBI) insig. 64 84
  Dickeya dianthicola 67-19 HGI48_RS09565 cold shock-like protein CspD cofit 66 77
  Dickeya dianthicola ME23 DZA65_RS09875 cold shock-like protein CspD insig. 66 77
  Alteromonas macleodii MIT1002 MIT1002_01832 Cold shock-like protein CspD cofit 69 73
  Enterobacter asburiae PDN3 EX28DRAFT_2052 cold shock domain protein CspD insig. 69 73
  Enterobacter sp. TBS_079 MPMX20_01542 Cold shock-like protein CspD strong 69 73
  Shewanella loihica PV-4 Shew_1564 cold-shock DNA-binding domain-containing protein (RefSeq) sig. 66 73
  Shewanella amazonensis SB2B Sama_2058 cold-shock DNA-binding domain-containing protein (RefSeq) sig. 64 76
  Serratia liquefaciens MT49 IAI46_08505 cold shock-like protein CspD insig. 67 73
  Dickeya dadantii 3937 DDA3937_RS09550 cold shock-like protein CspD sig. 65 77
  Shewanella sp. ANA-3 Shewana3_1751 cold-shock DNA-binding protein family protein (RefSeq) strong 66 73
  Shewanella oneidensis MR-1 SO2628 cspD stress response protein CspD (NCBI ptt file) strong 66 73
  Paraburkholderia sabiae LMG 24235 QEN71_RS02995 cold shock domain-containing protein CspD sig. 63 77
  Cupriavidus basilensis FW507-4G11 RR42_RS17115 cold-shock protein no data 63 77
  Herbaspirillum seropedicae SmR1 HSERO_RS07020 cold-shock protein no data 60 77
  Burkholderia phytofirmans PsJN BPHYT_RS15720 cold-shock protein no data 62 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04084 cold-shock DNA-binding protein family no data 62 77
  Paraburkholderia graminis OAS925 ABIE53_003308 CspA family cold shock protein no data 62 77
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04820 cold-shock protein no data 63 74
  Ralstonia solanacearum UW163 UW163_RS08850 cold-shock protein no data 63 74
o Pantoea sp. MT58 IAI47_12955 cold shock-like protein CspD insig. 57 84
  Rahnella sp. WP5 EX31_RS18570 cold shock-like protein CspD strong 63 73
  Dechlorosoma suillum PS Dsui_0007 cold shock protein insig. 60 76
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS04375 cold shock-like protein CspD cofit 64 69
  Ralstonia solanacearum PSI07 RPSI07_RS12565 cold-shock protein no data 61 76
  Ralstonia solanacearum GMI1000 RS_RS12380 cold-shock protein no data 60 76
  Castellaniella sp019104865 MT123 ABCV34_RS05315 cold-shock protein insig. 63 70
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS18735 cold-shock protein insig. 61 76
  Ralstonia solanacearum GMI1000 RS_RS22215 cold-shock protein sig. 61 76
  Ralstonia solanacearum PSI07 RPSI07_RS04860 cold-shock protein no data 61 76
  Ralstonia solanacearum UW163 UW163_RS20395 cold-shock protein insig. 61 76
  Ralstonia sp. UNC404CL21Col ABZR87_RS16270 cold-shock protein strong 62 74
  Ralstonia solanacearum GMI1000 RS_RS17205 cold-shock protein strong 62 74
  Ralstonia solanacearum PSI07 RPSI07_RS00010 cold-shock protein no data 62 74
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23260 cold-shock protein no data 62 74
  Ralstonia solanacearum UW163 UW163_RS16510 cold-shock protein no data 62 74
  Methylophilus sp. DMC18 GFF276 Cold shock-like protein CspA insig. 57 76
  Ralstonia sp. UNC404CL21Col ABZR87_RS00445 cold-shock protein strong 58 76
  Cupriavidus basilensis FW507-4G11 RR42_RS20855 cold-shock protein sig. 58 76
  Paraburkholderia sabiae LMG 24235 QEN71_RS35875 cold-shock protein insig. 55 74
  Herbaspirillum seropedicae SmR1 HSERO_RS15195 cold-shock protein no data 56 77
  Ralstonia sp. UNC404CL21Col ABZR87_RS19675 cold-shock protein insig. 58 73
  Burkholderia phytofirmans PsJN BPHYT_RS17545 cold-shock protein sig. 54 74
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05686 cold-shock DNA-binding protein family no data 54 74
  Paraburkholderia graminis OAS925 ABIE53_003669 CspA family cold shock protein insig. 54 74
  Burkholderia phytofirmans PsJN BPHYT_RS33480 cold-shock protein no data 57 74
  Paraburkholderia sabiae LMG 24235 QEN71_RS39145 cold-shock protein no data 55 74
  Burkholderia phytofirmans PsJN BPHYT_RS10920 cold-shock protein no data 54 74
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00535 cold-shock protein no data 56 70
  Pseudomonas syringae pv. syringae B728a Psyr_2160 cold-shock DNA-binding protein family insig. 54 74
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2160 cold-shock DNA-binding protein family no data 54 74
  Burkholderia phytofirmans PsJN BPHYT_RS34185 cold-shock protein sig. 52 76
  Cupriavidus basilensis FW507-4G11 RR42_RS37535 cold-shock protein no data 55 73
  Paraburkholderia sabiae LMG 24235 QEN71_RS27700 cold-shock protein no data 51 76
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01154 cold-shock DNA-binding protein family no data 52 74
  Paraburkholderia graminis OAS925 ABIE53_002280 CspA family cold shock protein no data 52 74
  Methylophilus sp. DMC18 GFF958 Cold shock protein CspV insig. 54 74
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3660.1 Cold shock protein CspD insig. 53 73
  Pseudomonas sp. BP01 JOY50_RS24030 cold-shock protein insig. 58 74
  Pseudomonas putida KT2440 PP_1099 Cold shock protein CapB strong 58 74
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03525 cold-shock DNA-binding protein family sig. 52 76
  Paraburkholderia graminis OAS925 ABIE53_004735 CspA family cold shock protein strong 52 76