Homologs of LRK55_RS15640 from Rhodanobacter denitrificans MT42

rRNA pseudouridine synthase
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodanobacter denitrificans MT42 LRK55_RS15640 rRNA pseudouridine synthase cofit 100 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS15885 rRNA pseudouridine synthase insig. 100 100
o Rhodanobacter sp. FW510-T8 OKGIIK_04535 rsuA RNA-binding protein insig. 93 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18320 rRNA pseudouridine synthase insig. 67 100
o Lysobacter sp. OAE881 ABIE51_RS13020 rRNA pseudouridine synthase insig. 61 100
o Pseudomonas sp. RS175 PFR28_00484 Dual-specificity RNA pseudouridine synthase RluF insig. 53 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4655 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 52 100
o Pseudomonas simiae WCS417 PS417_05870 RNA-binding protein S4 insig. 52 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3158 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 52 100
o Pseudomonas fluorescens SBW25 PFLU_RS05940 RNA-binding protein S4 insig. 51 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05940 RNA-binding protein S4 insig. 51 100
o Pseudomonas fluorescens FW300-N2C3 AO356_05610 RNA-binding protein insig. 52 100
o Pseudomonas fluorescens FW300-N2E3 AO353_16865 RNA-binding protein insig. 51 100
o Pseudomonas syringae pv. syringae B728a Psyr_1390 RNA-binding S4 insig. 49 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1390 RNA-binding S4 insig. 49 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1469.1 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 53 100
o Pseudomonas sp. S08-1 OH686_05400 Pseudouridine synthase insig. 53 100
o Acidovorax sp. GW101-3H11 Ac3H11_1984 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 51 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2980 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 51 90
o Pseudomonas putida KT2440 PP_1191 S4 domain protein insig. 49 100
  Dechlorosoma suillum PS Dsui_2759 pseudouridine synthase family protein insig. 46 98
o Pseudomonas stutzeri RCH2 Psest_2917 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases insig. 46 100
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF631 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 46 99
o Burkholderia phytofirmans PsJN BPHYT_RS12155 RNA-binding protein S4 insig. 39 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00606 23S rRNA pseudouridine2604 synthase insig. 41 94
  Paraburkholderia graminis OAS925 ABIE53_002509 23S rRNA pseudouridine2604 synthase insig. 40 98
o Variovorax sp. OAS795 ABID97_RS06090 RNA pseudouridine synthase cofit 46 99
o Herbaspirillum seropedicae SmR1 HSERO_RS10860 RNA pseudouridylate synthase insig. 43 100
o Castellaniella sp019104865 MT123 ABCV34_RS03070 pseudouridine synthase insig. 40 99
o Variovorax sp. SCN45 GFF3530 Pseudouridine synthase insig. 38 100
  Variovorax sp. OAS795 ABID97_RS00980 pseudouridine synthase strong 37 99
  Variovorax sp. SCN45 GFF4531 Pseudouridine synthase insig. 44 99
  Acidovorax sp. GW101-3H11 Ac3H11_4641 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 36 98
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF343 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 37 98
  Cupriavidus basilensis FW507-4G11 RR42_RS11890 16S rRNA pseudouridylate synthase insig. 38 98
  Ralstonia solanacearum GMI1000 RS_RS07030 16S rRNA uridine-516 pseudouridylate synthase sig. 37 98
  Ralstonia solanacearum PSI07 RPSI07_RS17115 16S rRNA uridine-516 pseudouridylate synthase cofit 38 98
  Ralstonia sp. UNC404CL21Col ABZR87_RS11810 pseudouridine synthase insig. 38 98
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS00360 16S rRNA pseudouridylate synthase insig. 37 98
  Ralstonia solanacearum UW163 UW163_RS13690 16S rRNA pseudouridylate synthase insig. 37 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS06405 pseudouridine synthase cofit 35 98
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07850 pseudouridine synthase insig. 33 99
  Caulobacter crescentus NA1000 CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 33 99
  Caulobacter crescentus NA1000 Δfur CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 33 99
  Vibrio cholerae E7946 ATCC 55056 CSW01_11335 23S rRNA pseudouridine(2604) synthase RluF insig. 26 99
  Desulfovibrio vulgaris Miyazaki F DvMF_0369 pseudouridine synthase (RefSeq) sig. 31 98
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08925 23S rRNA pseudouridine synthase F insig. 26 98
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08930 hypothetical protein insig. 28 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1010 pseudouridine synthase insig. 24 98
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07025 pseudouridine synthase insig. 25 98
  Rhodanobacter denitrificans MT42 LRK55_RS06765 pseudouridine synthase insig. 24 98
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1843.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 24 98
  Dechlorosoma suillum PS Dsui_0824 pseudouridine synthase family protein insig. 24 90
  Rhodanobacter sp. FW510-T8 OKGIIK_16610 Pseudouridine synthase insig. 25 98
  Fusobacterium nucleatum SB010 HUW76_04445 rRNA pseudouridine synthase cofit 23 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19110 23S rRNA pseudouridine synthase F insig. 24 98
  Lysobacter sp. OAE881 ABIE51_RS12720 pseudouridine synthase insig. 25 98
  Marinobacter adhaerens HP15 HP15_886 pseudouridine synthase family 1 protein insig. 25 98
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS16400 pseudouridine synthase cofit 23 98
  Shewanella amazonensis SB2B Sama_2614 pseudouridine synthase, Rsu (RefSeq) insig. 26 98
  Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 21 98
  Magnetospirillum magneticum AMB-1 AMB_RS20865 rRNA pseudouridine synthase cofit 30 77
  Ralstonia solanacearum PSI07 RPSI07_RS20655 16S rRNA pseudouridine(516) synthase insig. 26 90
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00325 16S rRNA pseudouridine(516) synthase insig. 27 98
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS12605 16S rRNA pseudouridine(516) synthase insig. 26 90
  Ralstonia solanacearum UW163 UW163_RS00960 16S rRNA pseudouridine(516) synthase insig. 26 90
  Enterobacter sp. TBS_079 MPMX20_00237 Dual-specificity RNA pseudouridine synthase RluF insig. 24 100
  Rahnella sp. WP5 EX31_RS06075 23S rRNA pseudouridine(2604) synthase RluF insig. 24 100
  Erwinia tracheiphila SCR3 LU632_RS22175 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 25 99
  Alteromonas macleodii MIT1002 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F insig. 24 98
  Enterobacter asburiae PDN3 EX28DRAFT_4322 pseudouridine synthase insig. 24 100
  Serratia liquefaciens MT49 IAI46_21130 23S rRNA pseudouridine(2604) synthase RluF insig. 24 99
  Pantoea sp. MT58 IAI47_19435 23S rRNA pseudouridine(2604) synthase RluF insig. 24 98
  Synechococcus elongatus PCC 7942 Synpcc7942_1010 ribosomal large subunit pseudouridine synthase B strong 28 97
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0719 pseudouridine synthase no data 22 100
  Pseudomonas sp. S08-1 OH686_05950 SSU rRNA pseudouridine(516) synthase insig. 26 98
  Klebsiella michiganensis M5al BWI76_RS19810 16S rRNA pseudouridine(516) synthase no data 24 98
  Rhodanobacter sp. FW510-T8 OKGIIK_06590 Pseudouridine synthase insig. 26 97
  Erwinia tracheiphila SCR3 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 25 98
  Rhodanobacter denitrificans MT42 LRK55_RS00435 pseudouridine synthase insig. 25 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00665 rRNA pseudouridine synthase insig. 25 97
  Serratia liquefaciens MT49 IAI46_19150 23S rRNA pseudouridine(2604) synthase RluF insig. 23 98
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18660 pseudouridine synthase no data 25 98
  Variovorax sp. OAS795 ABID97_RS09900 16S rRNA pseudouridine(516) synthase insig. 25 91
  Ralstonia solanacearum GMI1000 RS_RS03390 16S rRNA pseudouridine(516) synthase insig. 24 93
  Shewanella loihica PV-4 Shew_2975 pseudouridine synthase (RefSeq) insig. 26 98
  Pseudomonas putida KT2440 PP_1409 ribosomal small subunit pseudouridine synthase A insig. 27 98
  Variovorax sp. SCN45 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) insig. 25 92
  Magnetospirillum magneticum AMB-1 AMB_RS12445 rRNA pseudouridine synthase insig. 25 98
  Shewanella loihica PV-4 Shew_0916 pseudouridine synthase (RefSeq) insig. 24 97
  Pectobacterium carotovorum WPP14 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA insig. 24 98
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17510 pseudouridylate synthase strong 22 98
  Pseudomonas sp. RS175 PFR28_00665 Ribosomal small subunit pseudouridine synthase A insig. 26 98
  Dickeya dadantii 3937 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA insig. 24 98
  Vibrio cholerae E7946 ATCC 55056 CSW01_08220 16S rRNA pseudouridine(516) synthase insig. 23 98
  Lysobacter sp. OAE881 ABIE51_RS06125 pseudouridine synthase insig. 26 91
  Pseudomonas stutzeri RCH2 Psest_3049 pseudouridine synthase insig. 25 98
  Pseudomonas fluorescens FW300-N2C3 AO356_04690 16S rRNA pseudouridine(516) synthase insig. 25 98
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25065 pseudouridylate synthase no data 24 98
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1362 Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) insig. 23 99