Homologs of yrdD from Escherichia coli ECOR38

yrdD: Uncharacterized protein YrdD
SEED: Similar to C-terminal Zn-finger domain of DNA topoisomerase I
KEGG: putative DNA topoisomerase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli ECOR38 HEPCGN_16375 yrdD Uncharacterized protein YrdD sig. 100 100
o Escherichia coli ECRC62 BNILDI_02175 yrdD Uncharacterized protein YrdD cofit 100 100
o Escherichia fergusonii Becca EFB2_00540 DNA topoisomerase 1 cofit 99 100
o Escherichia coli Nissle 1917 ECOLIN_RS18850 type I DNA topoisomerase insig. 99 100
o Escherichia coli BL21 ECD_03134 ssDNA-binding protein, function unknown strong 99 100
o Escherichia coli ECOR27 NOLOHH_09345 yrdD Uncharacterized protein YrdD insig. 99 100
o Escherichia coli ECRC100 OKFHMN_17555 yrdD Uncharacterized protein YrdD cofit 99 100
o Escherichia coli ECRC101 MCAODC_08075 yrdD Uncharacterized protein YrdD insig. 99 100
o Escherichia coli ECRC102 NIAGMN_15315 yrdD Uncharacterized protein YrdD insig. 99 100
o Escherichia coli ECRC98 JDDGAC_21175 yrdD Uncharacterized protein YrdD insig. 99 100
o Escherichia coli ECRC99 KEDOAH_10595 yrdD Uncharacterized protein YrdD no data 99 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00420 DNA topoisomerase 1 insig. 99 100
o Escherichia coli BW25113 b3283 yrdD predicted DNA topoisomerase (NCBI) sig. 99 100
o Klebsiella michiganensis M5al BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein sig. 86 100
o Klebsiella pneumoniae MKP103 KDGMDA_06525 Uncharacterized protein YrdD insig. 86 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I insig. 86 100
o Enterobacter asburiae PDN3 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I cofit 84 100
o Enterobacter sp. TBS_079 MPMX20_04191 DNA topoisomerase 1 sig. 83 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS22550 hypothetical protein cofit 75 100
o Pantoea sp. MT58 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein sig. 75 100
o Pectobacterium carotovorum WPP14 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 73 100
o Rahnella sp. WP5 EX31_RS15960 hypothetical protein insig. 74 98
o Erwinia amylovora T8 OLJFJH_03695 DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains insig. 72 99
o Serratia liquefaciens MT49 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 72 99
o Dickeya dadantii 3937 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 73 100
o Dickeya dianthicola ME23 DZA65_RS20325 hypothetical protein insig. 73 100
o Dickeya dianthicola 67-19 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 73 100
o Erwinia tracheiphila SCR3 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 71 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12495 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 72 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_00255 DNA topoisomerase insig. 56 91
o Shewanella loihica PV-4 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 46 91
o Shewanella amazonensis SB2B Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) insig. 48 91
o Shewanella sp. ANA-3 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 46 89
o Alteromonas macleodii MIT1002 MIT1002_00024 DNA topoisomerase 1 cofit 45 83
o Shewanella oneidensis MR-1 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) sig. 44 91
  Desulfovibrio vulgaris Hildenborough JW710 DVU3389 topA DNA topoisomerase I (TIGR) no data 40 96
  Desulfovibrio vulgaris Miyazaki F DvMF_2069 DNA topoisomerase I (RefSeq) no data 40 89
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 52 48
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 52 48
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 28 66
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 28 66
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 44 44
o Shewanella sp. ANA-3 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 38 63
o Shewanella oneidensis MR-1 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) sig. 38 63
o Shewanella loihica PV-4 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 35 63
  Rhodopseudomonas palustris CGA009 TX73_016155 type I DNA topoisomerase strong 38 49
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 38 40
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 38 46
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 36 44
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 36 44
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 40 38
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 44 34
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 56 22
  Rhizobium sp. OAE497 ABIE40_RS07355 type I DNA topoisomerase sig. 39 38
  Sinorhizobium meliloti 1021 SMc01364 DNA topoisomerase I insig. 36 45
  Agrobacterium fabrum C58 Atu1304 DNA topoisomerase I no data 38 45
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 35 40
  Bosea sp. OAE506 ABIE41_RS17240 type I DNA topoisomerase no data 40 38
  Sphingobium sp. HT1-2 GFF115 DNA topoisomerase I (EC 5.99.1.2) no data 40 34
  Rhodospirillum rubrum S1H Rru_A3202 DNA topoisomerase (NCBI) strong 33 50
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 61 18
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 61 18
  Phaeobacter inhibens DSM 17395 PGA1_c06220 DNA topoisomerase TopA no data 37 38
  Rhodospirillum rubrum S1H Rru_A3202 DNA topoisomerase (NCBI) strong 48 29
  Pseudomonas sp. S08-1 OH686_21940 DNA topoisomerase I no data 33 48
  Pseudomonas sp. RS175 PFR28_01113 DNA topoisomerase 1 strong 31 48
  Pseudomonas fluorescens FW300-N2C3 AO356_02315 DNA topoisomerase I strong 30 48
  Pseudomonas fluorescens SBW25 PFLU_RS07665 type I DNA topoisomerase strong 30 48
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07665 type I DNA topoisomerase strong 30 48
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01650 DNA topoisomerase 1 no data 30 48
  Pseudomonas simiae WCS417 PS417_07590 DNA topoisomerase I no data 30 48
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) no data 30 48
  Pseudomonas sp. BP01 JOY50_RS25050 topA type I DNA topoisomerase no data 33 44
  Pseudomonas putida KT2440 PP_2139 DNA topoisomerase I no data 33 44
  Sphingobium sp. HT1-2 GFF115 DNA topoisomerase I (EC 5.99.1.2) no data 37 40
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 34 42
  Pseudomonas sp. DMC3 GFF1274 DNA topoisomerase 1 no data 31 44
  Acinetobacter baumannii LAC-4 RR41_RS16785 type I DNA topoisomerase no data 30 64
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 38 38
  Vibrio cholerae E7946 ATCC 55056 CSW01_08695 DNA topoisomerase 1 no data 33 44
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05145 NERD domain-containing protein insig. 49 21
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 31 44
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 31 44
  Agrobacterium fabrum C58 Atu1304 DNA topoisomerase I no data 55 18
  Rhizobium sp. OAE497 ABIE40_RS07355 type I DNA topoisomerase sig. 55 18
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2568.1 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster insig. 43 26
  Methylophilus sp. DMC18 GFF1540 DNA topoisomerase 1 no data 28 58
  Azospirillum sp. SherDot2 MPMX19_01509 DNA topoisomerase 1 no data 35 41
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04230 type I DNA topoisomerase no data 32 50
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4038 DNA topoisomerase I (EC 5.99.1.2) strong 30 48
  Pseudomonas aeruginosa PA14 IKLFDK_15320 type I DNA topoisomerase no data 31 44
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3906 DNA topoisomerase I (EC 5.99.1.2) strong 29 48
  Pseudomonas fluorescens FW300-N2E3 AO353_00495 DNA topoisomerase I strong 29 48
  Pseudomonas sp. SVBP6 COO64_RS09410 topA type I DNA topoisomerase strong 32 48
  Phaeobacter inhibens DSM 17395 PGA1_c06220 DNA topoisomerase TopA no data 51 21
  Pseudomonas segetis P6 MPMX49_02992 DNA topoisomerase 1 no data 33 44
  Bosea sp. OAE506 ABIE41_RS17240 type I DNA topoisomerase no data 58 17
  Pseudomonas stutzeri RCH2 Psest_2651 DNA topoisomerase I, bacterial strong 32 48
  Azospirillum brasilense Sp245 AZOBR_RS15890 DNA topoisomerase I strong 36 38
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 61 17