Homologs of Psest_4133 from Pseudomonas stutzeri RCH2

RNA polymerase sigma factor, sigma-70 family
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

155 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas stutzeri RCH2 Psest_4133 RNA polymerase sigma factor, sigma-70 family sig. 100 100
o Pseudomonas fluorescens FW300-N2E3 AO353_03200 RNA polymerase subunit sigma-24 insig. 69 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3399 RNA polymerase sigma-70 factor, ECF subfamily insig. 70 99
o Pseudomonas sp. DMC3 GFF5258 hypothetical protein cofit 71 97
o Pseudomonas orientalis W4I3 QF045_RS24050 RNA polymerase sigma factor insig. 71 97
o Pseudomonas sp. RS175 PFR28_00603 hypothetical protein insig. 72 97
o Pseudomonas sp. S08-1 OH686_16765 RNA polymerase ECF-type sigma factor cofit 71 97
o Pseudomonas fluorescens FW300-N2C3 AO356_05020 RNA polymerase subunit sigma-24 insig. 71 97
o Pseudomonas aeruginosa MRSN321 DY961_RS19105 RNA polymerase sigma factor insig. 73 97
o Pseudomonas aeruginosa PA14 IKLFDK_06430 RNA polymerase subunit sigma-24 insig. 73 97
o Pseudomonas aeruginosa PUPa3 DQ20_RS53230 RNA polymerase sigma factor insig. 72 97
o Pseudomonas fluorescens SBW25 PFLU_RS23540 RNA polymerase sigma factor insig. 71 97
o Pseudomonas fluorescens SBW25-INTG PFLU_RS23540 RNA polymerase sigma factor insig. 71 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04525 hypothetical protein cofit 69 97
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2854 RNA polymerase sigma-70 factor, ECF subfamily insig. 71 97
o Pseudomonas sp. SVBP6 COO64_RS22035 RNA polymerase sigma factor insig. 71 97
o Pseudomonas sp. BP01 JOY50_RS01330 RNA polymerase sigma factor insig. 67 97
o Pseudomonas simiae WCS417 PS417_21945 RNA polymerase subunit sigma-24 insig. 71 97
o Pseudomonas protegens RBAN4 FABNJH_23555 RNA polymerase sigma factor, sigma-70 family insig. 70 98
o Pseudomonas putida KT2440 PP_4553 RNA polymerase sigma-70 factor, ECF subfamily insig. 66 97
o Rhizobium sp. OAE497 ABIE40_RS05880 RNA polymerase sigma factor insig. 61 97
o Pseudomonas segetis P6 ACVTMO_RS18060 RNA polymerase sigma factor insig. 64 97
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1935 RNA polymerase sigma-70 factor, ECF subfamily insig. 76 64
o Rhodanobacter denitrificans MT42 LRK55_RS01915 RNA polymerase sigma factor cofit 52 97
o Variovorax sp. SCN45 GFF3935 RNA polymerase ECF-type sigma factor insig. 51 93
  Rhizobium sp. OAE497 ABIE40_RS18175 RNA polymerase sigma factor cofit 50 97
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF454 RNA polymerase sigma-70 factor, ECF subfamily insig. 51 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS21130 RNA polymerase sigma factor insig. 54 89
o Lysobacter sp. OAE881 ABIE51_RS14880 RNA polymerase sigma factor insig. 50 93
o Cupriavidus basilensis FW507-4G11 RR42_RS26775 RNA polymerase subunit sigma-24 insig. 50 95
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3970 Predicted RNA polymerase sigma factor containing a TPR repeat domain insig. 50 95
o Rhodanobacter sp. FW510-T8 OKGIIK_09210 RNA polymerase subunit sigma-24 insig. 52 97
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02165 RNA polymerase sigma factor insig. 52 97
o Ralstonia solanacearum GMI1000 RS_RS20165 RNA polymerase subunit sigma-24 insig. 51 98
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07860 RNA polymerase sigma factor insig. 53 93
o Variovorax sp. OAS795 ABID97_RS08675 RNA polymerase sigma factor insig. 50 95
o Paraburkholderia sabiae LMG 24235 QEN71_RS16225 RNA polymerase sigma factor insig. 47 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19755 RNA polymerase sigma factor insig. 48 97
o Acidovorax sp. GW101-3H11 Ac3H11_5010 RNA polymerase sigma-70 factor, ECF subfamily insig. 48 95
o Burkholderia phytofirmans PsJN BPHYT_RS35225 RNA polymerase subunit sigma-24 insig. 49 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4799.1 RNA polymerase sigma-70 factor, ECF subfamily insig. 49 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03679 RNA polymerase, sigma subunit, ECF family insig. 49 95
o Xanthobacter sp. DMC5 GFF549 hypothetical protein insig. 47 98
o Paraburkholderia graminis OAS925 ABIE53_004579 RNA polymerase sigma factor (sigma-70 family) insig. 50 90
  Rhizobium sp. OAE497 ABIE40_RS13680 RNA polymerase sigma factor insig. 45 93
o Sinorhizobium meliloti 1021 SMc01150 hypothetical protein insig. 45 94
o Rhodopseudomonas palustris CGA009 TX73_005700 RNA polymerase sigma factor insig. 45 97
  Caulobacter crescentus NA1000 CCNA_01390 RNA polymerase sigma factor insig. 46 89
  Caulobacter crescentus NA1000 Δfur CCNA_01390 RNA polymerase sigma factor insig. 46 89
  Burkholderia phytofirmans PsJN BPHYT_RS31175 RNA polymerase sigma70 factor insig. 43 86
  Paraburkholderia sabiae LMG 24235 QEN71_RS33360 sigma factor insig. 44 86
  Variovorax sp. SCN45 GFF4791 RNA polymerase ECF-type sigma factor insig. 41 94
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS15535 DNA-directed RNA polymerase sigma-70 factor insig. 45 91
o Bosea sp. OAE506 ABIE41_RS09620 DUF6596 domain-containing protein insig. 44 88
  Variovorax sp. OAS795 ABID97_RS20345 DUF6596 domain-containing protein insig. 40 87
  Rhodanobacter denitrificans MT42 LRK55_RS15255 sigma factor insig. 46 91
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4295 Predicted RNA polymerase sigma factor containing a TPR repeat domain insig. 32 97
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12320 RNA polymerase sigma factor insig. 33 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4599 RNA polymerase sigma-70 factor, ECF subfamily insig. 35 96
  Caulobacter crescentus NA1000 CCNA_00393 RNA polymerase sigma factor insig. 38 83
  Caulobacter crescentus NA1000 Δfur CCNA_00393 RNA polymerase sigma factor cofit 38 83
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1936 RNA polymerase sigma-70 factor, ECF subfamily insig. 61 34
  Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 29 38
  Paraburkholderia sabiae LMG 24235 QEN71_RS31540 RNA polymerase sigma-70 factor insig. 33 36
  Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 31 35
  Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 31 36
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS15060 RNA polymerase sigma factor SigJ insig. 30 52
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS19925 sigma-70 family RNA polymerase sigma factor insig. 28 38
  Lysobacter sp. OAE881 ABIE51_RS11095 RNA polymerase sigma-70 factor insig. 32 38
  Rhodanobacter denitrificans MT42 LRK55_RS14775 RNA polymerase sigma factor SigJ insig. 30 52
  Burkholderia phytofirmans PsJN BPHYT_RS11635 RNA polymerase subunit sigma-24 insig. 33 37
  Rhizobium sp. OAE497 ABIE40_RS15675 sigma-70 family RNA polymerase sigma factor insig. 32 33
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 37
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 37
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 29 37
  Kangiella aquimarina DSM 16071 B158DRAFT_0015 RNA polymerase sigma factor, sigma-70 family insig. 27 36
  Rhodanobacter sp. FW510-T8 OKGIIK_03820 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 52
  Variovorax sp. SCN45 GFF5440 RNA polymerase ECF-type sigma factor insig. 28 37
  Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 30 38
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01465 RNA polymerase sigma-70 factor, ECF subfamily insig. 28 39
  Bacteroides stercoris CC31F HMPREF1181_RS10740 sigma-70 family RNA polymerase sigma factor sig. 28 38
  Pantoea sp. MT58 IAI47_04850 RNA polymerase sigma factor RpoE no data 38 20
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 29 37
  Dickeya dianthicola 67-19 HGI48_RS15850 RNA polymerase sigma factor RpoE cofit 36 20
  Dickeya dianthicola ME23 DZA65_RS16930 RNA polymerase sigma factor RpoE strong 36 20
  Dickeya dadantii 3937 DDA3937_RS15765 RNA polymerase sigma factor RpoE strong 36 20
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00750 RNA polymerase sigma factor SigJ insig. 30 39
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01268 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 36
  Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 28 37
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 26 36
  Pectobacterium carotovorum WPP14 HER17_RS05780 RNA polymerase sigma factor RpoE no data 36 20
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 30 36
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 30 36
  Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 30 36
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01572 RNA polymerase sigma-H factor cofit 30 36
  Pseudomonas protegens RBAN4 FABNJH_07555 algU alginate biosynthesis protein AlgZ/FimS insig. 30 36
  Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 30 36
  Pseudomonas sp. SVBP6 COO64_RS16525 rpoE RNA polymerase sigma factor RpoE insig. 30 36
  Pseudomonas orientalis W4I3 QF045_RS09835 RNA polymerase sigma factor RpoE cofit 30 36
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 30 36
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 30 36
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 30 36
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 30 36
  Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 30 36
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 30 36
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04530 sigma-70 family RNA polymerase sigma factor insig. 28 37
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 28 37
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 28 37
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 28 37
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 28 37
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01610 RNA polymerase sigma-70 factor insig. 26 39
  Rahnella sp. WP5 EX31_RS21800 RNA polymerase sigma factor RpoE no data 36 20
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 28 39
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 28 39
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 26 38
  Serratia liquefaciens MT49 IAI46_19585 RNA polymerase sigma factor RpoE no data 36 20
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS05140 rpoE RNA polymerase sigma factor RpoE no data 36 20
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 30 35
  Escherichia coli BL21 ECD_02467 RNA polymerase sigma E factor no data 30 33
  Escherichia fergusonii Becca EFB2_01323 ECF RNA polymerase sigma-E factor no data 30 33
  Escherichia coli ECOR27 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli ECOR38 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli ECRC100 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli ECRC101 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli ECRC102 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli ECRC62 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli ECRC98 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli ECRC99 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01134 ECF RNA polymerase sigma-E factor no data 30 33
  Escherichia coli Nissle 1917 ECOLIN_RS14560 RNA polymerase sigma factor RpoE no data 30 33
  Escherichia coli BW25113 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) no data 30 33
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2107 RNA polymerase sigma factor RpoE no data 30 33
  Pseudomonas sp. BP01 JOY50_RS14665 rpoE RNA polymerase sigma factor RpoE insig. 29 36
  Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 29 36
  Pseudomonas segetis P6 ACVTMO_RS06940 rpoE RNA polymerase sigma factor RpoE strong 28 36
  Variovorax sp. OAS795 ABID97_RS02030 RNA polymerase sigma-70 factor insig. 28 39
  Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 25 38
  Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 25 37
  Enterobacter asburiae PDN3 EX28DRAFT_0072 RNA polymerase sigma factor RpoE no data 35 20
  Enterobacter sp. TBS_079 MPMX20_03444 ECF RNA polymerase sigma-E factor no data 35 20
  Klebsiella pneumoniae MKP103 KDGMDA_28480 RNA polymerase sigma factor RpoE no data 35 20
  Klebsiella pneumoniae MRSN742743 KFA93_RS04695 rpoE;go_function=DNA RNA polymerase sigma factor RpoE no data 35 20
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 29 38
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 36 21
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 36 21
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 29 36
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 28 36
  Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 34 20
  Paraburkholderia graminis OAS925 ABIE53_004797 RNA polymerase sigma-70 factor (ECF subfamily) insig. 29 37
  Shewanella loihica PV-4 Shew_2956 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 28 36
  Methylophilus sp. DMC18 GFF1725 ECF RNA polymerase sigma factor SigM insig. 25 33
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 35 21
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 30 33
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 28 36
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 31 33