Homologs of GFF3394 from Sphingobium sp. HT1-2

Transcriptional regulator CidR, LysR family
SEED: LysR family regulatory protein CidR

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3394 Transcriptional regulator CidR, LysR family insig. 100 100
o Pseudomonas simiae WCS417 PS417_19125 LysR family transcriptional regulator sig. 49 96
o Pseudomonas fluorescens SBW25 PFLU_RS21120 LysR family transcriptional regulator insig. 49 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21120 LysR family transcriptional regulator strong 49 96
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04052 HTH-type transcriptional regulator CynR cofit 48 97
o Pseudomonas orientalis W4I3 QF045_RS21080 LysR family transcriptional regulator cofit 47 96
o Xanthobacter sp. DMC5 GFF698 HTH-type transcriptional regulator CynR no data 48 96
o Pseudomonas syringae pv. syringae B728a Psyr_0909 transcriptional regulator, LysR family insig. 47 97
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0909 transcriptional regulator, LysR family insig. 47 97
o Pseudomonas aeruginosa PA14 IKLFDK_17625 LysR family transcriptional regulator sig. 45 96
o Pseudomonas aeruginosa MRSN321 DY961_RS15760 LysR family transcriptional regulator insig. 45 96
o Pseudomonas aeruginosa PUPa3 DQ20_RS41320 LysR family transcriptional regulator insig. 45 96
o Pseudomonas sp. SVBP6 COO64_RS03600 LysR family transcriptional regulator insig. 42 97
o Pseudomonas putida KT2440 PP_4627 transcriptional regulator, LysR family sig. 41 96
o Pseudomonas sp. BP01 JOY50_RS15585 LysR family transcriptional regulator insig. 40 97
  Pseudomonas simiae WCS417 PS417_23460 LysR family transcriptional regulator insig. 40 96
o Paraburkholderia graminis OAS925 ABIE53_000065 DNA-binding transcriptional LysR family regulator insig. 41 96
o Desulfovibrio vulgaris Hildenborough JW710 DVU2111 transcriptional regulator, LysR family (TIGR) insig. 42 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05796 transcriptional regulator, LysR family insig. 41 96
o Burkholderia phytofirmans PsJN BPHYT_RS18725 LysR family transcriptional regulator insig. 41 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS28745 LysR family transcriptional regulator cofit 40 96
o Shewanella amazonensis SB2B Sama_2928 LysR family transcriptional regulator (RefSeq) strong 40 96
o Cupriavidus basilensis FW507-4G11 RR42_RS27560 transcriptional regulator insig. 40 96
o Shewanella loihica PV-4 Shew_0828 LysR family transcriptional regulator (RefSeq) insig. 35 95
o Shewanella oneidensis MR-1 SO1046 transcriptional regulator, LysR family (NCBI ptt file) insig. 40 96
o Vibrio cholerae E7946 ATCC 55056 CSW01_10505 LysR family transcriptional regulator insig. 38 97
o Pseudomonas fluorescens FW300-N2E3 AO353_15120 hypothetical protein insig. 38 95
o Shewanella sp. ANA-3 Shewana3_0884 LysR family transcriptional regulator (RefSeq) cofit 38 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS21070 LysR family transcriptional regulator insig. 36 96
o Pantoea sp. MT58 IAI47_17745 LysR family transcriptional regulator insig. 36 96
o Erwinia amylovora T8 OLJFJH_03365 LysR family transcriptional regulator insig. 35 96
  Cupriavidus basilensis FW507-4G11 RR42_RS33910 LysR family transcriptional regulator insig. 34 96
o Escherichia fergusonii Becca EFB2_04525 Hydrogen peroxide-inducible genes activator insig. 36 94
o Escherichia coli Nissle 1917 ECOLIN_RS23525 LysR family transcriptional regulator insig. 36 94
o Serratia liquefaciens MT49 IAI46_22830 LysR family transcriptional regulator insig. 36 96
o Acinetobacter radioresistens SK82 MPMX26_01607 HTH-type transcriptional regulator GltC no data 33 96
o Enterobacter sp. TBS_079 MPMX20_00286 Hydrogen peroxide-inducible genes activator insig. 34 94
o Enterobacter asburiae PDN3 EX28DRAFT_4237 Transcriptional regulator insig. 34 97
o Rahnella sp. WP5 EX31_RS12125 LysR family transcriptional regulator insig. 34 96
o Klebsiella pneumoniae MKP103 KDGMDA_10515 LysR family transcriptional regulator insig. 35 94
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1447 LysR family regulatory protein CidR insig. 34 94
o Klebsiella michiganensis M5al BWI76_RS02045 LysR family transcriptional regulator sig. 34 94
o Herbaspirillum seropedicae SmR1 HSERO_RS00200 LysR family transcriptional regulator insig. 35 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS12175 LysR family transcriptional regulator insig. 33 96
  Shewanella oneidensis MR-1 SO0843 transcriptional regulator, LysR family (NCBI ptt file) insig. 31 97
  Shewanella amazonensis SB2B Sama_0586 LysR family transcriptional regulator (RefSeq) strong 30 98
  Shewanella sp. ANA-3 Shewana3_3435 LysR family transcriptional regulator (RefSeq) insig. 30 97
o Castellaniella sp019104865 MT123 ABCV34_RS09910 LysR family transcriptional regulator insig. 33 95
o Acinetobacter baumannii LAC-4 RR41_RS11345 LysR family transcriptional regulator insig. 29 96
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF11 Transcriptional regulator, lysR family no data 30 96
  Shewanella loihica PV-4 Shew_3562 LysR family transcriptional regulator (RefSeq) insig. 30 95
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3076 LysR family transcriptional regulator STM3121 insig. 32 90
  Vibrio cholerae E7946 ATCC 55056 CSW01_08130 LysR family transcriptional regulator insig. 26 96
o Variovorax sp. OAS795 ABID97_RS28905 LysR substrate-binding domain-containing protein insig. 28 98
  Pseudomonas putida KT2440 PP_3366 Transcriptional regulator, LysR family sig. 29 96
  Pseudomonas sp. BP01 JOY50_RS14160 LysR family transcriptional regulator insig. 29 96
  Pseudomonas fluorescens SBW25 PFLU_RS12705 LysR family transcriptional regulator insig. 26 94
  Pseudomonas fluorescens SBW25-INTG PFLU_RS12705 LysR family transcriptional regulator insig. 26 94
  Pseudomonas sp. SVBP6 COO64_RS20555 LysR family transcriptional regulator insig. 30 96
  Pseudomonas fluorescens SBW25 PFLU_RS14945 LysR family transcriptional regulator insig. 31 96
  Pseudomonas fluorescens SBW25-INTG PFLU_RS14945 LysR family transcriptional regulator strong 31 96
o Escherichia coli ECRC100 OKFHMN_08840 cynR transcriptional regulator CynR insig. 27 96
o Escherichia coli ECRC101 MCAODC_28070 cynR transcriptional regulator CynR insig. 27 96
o Escherichia coli ECRC102 NIAGMN_06895 cynR transcriptional regulator CynR insig. 27 96
o Escherichia coli ECRC98 JDDGAC_12495 cynR transcriptional regulator CynR insig. 27 96
o Escherichia coli ECRC99 KEDOAH_19125 cynR transcriptional regulator CynR no data 27 96
o Escherichia coli ECOR27 NOLOHH_01740 cynR transcriptional regulator CynR insig. 27 96
o Escherichia coli ECRC62 BNILDI_23155 cynR transcriptional regulator CynR insig. 27 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03333 HTH-type transcriptional regulator CynR insig. 27 96
o Pseudomonas fluorescens FW300-N2C3 AO356_28895 LysR family transcriptional regulator insig. 30 96
  Dechlorosoma suillum PS Dsui_3101 transcriptional regulator sig. 28 89
o Escherichia coli ECOR38 HEPCGN_07455 cynR transcriptional regulator CynR insig. 27 95
o Pseudomonas sp. RS175 PFR28_01942 HTH-type transcriptional regulator CynR strong 30 96
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4462 LysR family transcriptional regulator YbhD insig. 29 96
  Pseudomonas sp. BP01 JOY50_RS22305 LysR family transcriptional regulator insig. 29 96
  Pseudomonas putida KT2440 PP_2054 putative DNA-binding transcriptional regulator sig. 29 96
  Enterobacter sp. TBS_079 MPMX20_01221 HTH-type transcriptional regulator BenM insig. 32 90
  Pseudomonas simiae WCS417 PS417_07355 transcriptional regulator insig. 28 95
  Pseudomonas sp. BP01 JOY50_RS12935 cynR transcriptional regulator CynR insig. 28 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS38685 LysR family transcriptional regulator insig. 31 84
  Dickeya dianthicola 67-19 HGI48_RS03375 LysR family transcriptional regulator insig. 30 80
  Azospirillum brasilense Sp245 AZOBR_RS19665 LysR family transcripitonal regulator insig. 29 90
  Escherichia coli BL21 ECD_00292 transcriptional activator of cyn operon; autorepressor insig. 26 95
  Escherichia coli BW25113 b0338 cynR DNA-binding transcriptional dual regulator (NCBI) insig. 26 95
  Rhizobium sp. OAE497 ABIE40_RS01530 LysR family transcriptional regulator insig. 32 85
  Herbaspirillum seropedicae SmR1 HSERO_RS08245 CysB family transcriptional regulator insig. 28 91
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator insig. 31 79
  Desulfovibrio vulgaris Hildenborough JW710 DVU3313 transcriptional regulator, LysR family (TIGR) insig. 31 89
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01885 DNA-binding transcriptional regulator, LysR family insig. 31 80
  Paraburkholderia graminis OAS925 ABIE53_004883 DNA-binding transcriptional LysR family regulator sig. 31 80
  Dickeya dianthicola ME23 DZA65_RS03420 LysR family transcriptional regulator insig. 29 80
  Castellaniella sp019104865 MT123 ABCV34_RS13660 LysR family transcriptional regulator insig. 29 96
  Burkholderia phytofirmans PsJN BPHYT_RS10635 transcriptional regulator insig. 28 96
  Enterobacter asburiae PDN3 EX28DRAFT_2404 Transcriptional regulator insig. 32 90
  Paraburkholderia sabiae LMG 24235 QEN71_RS32390 LysR family transcriptional regulator insig. 29 95
  Rahnella sp. WP5 EX31_RS04240 LysR family transcriptional regulator insig. 29 90
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4442 Cyn operon transcriptional activator insig. 28 95
  Cupriavidus basilensis FW507-4G11 RR42_RS27195 LysR family transcriptional regulator insig. 31 85
  Klebsiella pneumoniae MKP103 KDGMDA_21225 LysR family transcriptional regulator insig. 29 91
  Burkholderia phytofirmans PsJN BPHYT_RS10210 LysR family transcriptional regulator no data 32 80