Homologs of GFF2064 from Sphingobium sp. HT1-2

RidA/YER057c/UK114 superfamily protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF2064 RidA/YER057c/UK114 superfamily protein cofit 100 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4209 Translation initiation inhibitor insig. 51 98
o Pseudomonas fluorescens FW300-N2C3 AO356_26795 reactive intermediate/imine deaminase insig. 48 98
o Pseudomonas syringae pv. syringae B728a Psyr_3399 Endoribonuclease L-PSP insig. 48 95
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3399 Endoribonuclease L-PSP insig. 48 95
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_353 Bona fide RidA/YjgF/TdcF/RutC subgroup insig. 46 95
o Paraburkholderia sabiae LMG 24235 QEN71_RS19585 RidA family protein insig. 53 92
o Burkholderia phytofirmans PsJN BPHYT_RS15355 endoribonuclease L-PSP insig. 50 88
o Pseudomonas lactucae CFBP13502 GEMAOFIL_03858 2-iminobutanoate/2-iminopropanoate deaminase cofit 47 95
o Pseudomonas simiae WCS417 PS417_12920 endoribonuclease insig. 48 95
o Paraburkholderia graminis OAS925 ABIE53_003968 2-iminobutanoate/2-iminopropanoate deaminase insig. 52 92
o Pseudomonas fluorescens SBW25 PFLU_RS13590 RidA family protein insig. 50 92
o Pseudomonas fluorescens SBW25-INTG PFLU_RS13590 RidA family protein insig. 50 92
  Paraburkholderia sabiae LMG 24235 QEN71_RS38550 RidA family protein insig. 47 96
o Variovorax sp. OAS795 ABID97_RS21535 RidA family protein no data 46 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06511 reactive intermediate/imine deaminase insig. 45 89
o Ralstonia sp. UNC404CL21Col ABZR87_RS05790 RidA family protein insig. 48 88
  Ralstonia sp. UNC404CL21Col ABZR87_RS17675 RidA family protein insig. 45 88
o Cupriavidus basilensis FW507-4G11 RR42_RS33455 endoribonuclease L-PSP insig. 44 98
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS16635 RidA family protein insig. 44 88
o Ralstonia solanacearum PSI07 RPSI07_RS06815 RidA family protein insig. 44 88
o Ralstonia solanacearum UW163 UW163_RS17990 RidA family protein insig. 44 88
  Burkholderia phytofirmans PsJN BPHYT_RS29300 endoribonuclease L-PSP insig. 45 88
o Ralstonia solanacearum GMI1000 RS_RS24425 RidA family protein insig. 44 88
o Herbaspirillum seropedicae SmR1 HSERO_RS05705 endoribonuclease L-PSP insig. 43 89
o Synechocystis sp000284455 PCC 6803 SGL_RS16325 RidA family protein strong 37 99
o Bacteroides thetaiotaomicron VPI-5482 BT1336 putative translation initiation inhibitor (NCBI ptt file) strong 39 94
o Bacteroides ovatus ATCC 8483 BACOVA_00589 putative endoribonuclease L-PSP cofit 39 94
o Fusobacterium nucleatum SB010 HUW76_10065 RidA family protein strong 36 94
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17590 RidA family protein sig. 35 93
o Bifidobacterium breve UCC2003 BBR_RS12070 endoribonuclease L-PSP sig. 36 96
o Synechococcus elongatus PCC 7942 Synpcc7942_0972 YjgF-like protein strong 39 94
  Bacteroides stercoris CC31F HMPREF1181_RS10885 RidA family protein strong 38 94
o Sinorhizobium meliloti 1021 SM_b21139 translation initiation inhibitors insig. 39 96
  Cupriavidus basilensis FW507-4G11 RR42_RS28840 hypothetical protein insig. 42 84
o Azospirillum brasilense Sp245 AZOBR_RS32435 dfrA insig. 36 92
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18400 RidA family protein strong 34 94
  Methylophilus sp. DMC18 GFF1301 2-iminobutanoate/2-iminopropanoate deaminase cofit 31 92
o Phocaeicola dorei CL03T12C01 ABI39_RS14715 RidA family protein strong 34 94
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS18170 RidA family protein no data 39 83
  Ralstonia solanacearum UW163 UW163_RS20960 RidA family protein no data 39 83
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17245 RidA family protein no data 34 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS12635 RidA family protein insig. 40 83
o Castellaniella sp019104865 MT123 ABCV34_RS03565 Rid family detoxifying hydrolase no data 32 96
  Ralstonia solanacearum PSI07 RPSI07_RS05465 RidA family protein insig. 38 83
  Pseudomonas fluorescens FW300-N2C3 AO356_16860 reactive intermediate/imine deaminase strong 35 92
o Desulfovibrio vulgaris Hildenborough JW710 DVU2647 endoribonuclease, L-PSP family (TIGR) sig. 34 98
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5297 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein insig. 35 92
  Ralstonia solanacearum GMI1000 RS_RS22865 RidA family protein no data 38 83
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22825 reactive intermediate/imine deaminase strong 31 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01890 reactive intermediate/imine deaminase insig. 37 83
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2329 Endoribonuclease L-PSP insig. 35 85
  Rhodanobacter denitrificans MT42 LRK55_RS11525 RidA family protein cofit 33 95
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11800 RidA family protein strong 33 95
  Cellulophaga baltica 18 M666_RS12150 RidA family protein insig. 30 95
o Azospirillum sp. SherDot2 MPMX19_04018 2-aminomuconate deaminase insig. 33 95
  Lysobacter sp. OAE881 ABIE51_RS17260 RidA family protein strong 33 98
  Rhodanobacter sp. FW510-T8 OKGIIK_12095 ridA reactive intermediate/imine deaminase strong 32 95
  Ralstonia sp. UNC404CL21Col ABZR87_RS19100 RidA family protein strong 38 83
o Escherichia coli BL21 ECD_02980 putative reactive intermediate deaminase insig. 32 94
o Escherichia fergusonii Becca EFB2_00701 Putative reactive intermediate deaminase TdcF insig. 32 94
o Escherichia coli ECOR27 NOLOHH_10200 tdcF enamine/imine deaminase insig. 32 94
o Escherichia coli ECOR38 HEPCGN_17255 tdcF enamine/imine deaminase insig. 32 94
o Escherichia coli ECRC100 OKFHMN_18420 tdcF enamine/imine deaminase insig. 32 94
o Escherichia coli ECRC101 MCAODC_08935 tdcF enamine/imine deaminase insig. 32 94
o Escherichia coli ECRC102 NIAGMN_16185 tdcF enamine/imine deaminase insig. 32 94
o Escherichia coli ECRC62 BNILDI_01325 tdcF enamine/imine deaminase insig. 32 94
o Escherichia coli ECRC98 JDDGAC_22055 tdcF enamine/imine deaminase insig. 32 94
o Escherichia coli ECRC99 KEDOAH_09725 tdcF enamine/imine deaminase no data 32 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00587 Putative reactive intermediate deaminase TdcF insig. 32 94
o Escherichia coli Nissle 1917 ECOLIN_RS17920 enamine/imine deaminase insig. 32 94
o Escherichia coli BW25113 b3113 yhaR orf, hypothetical protein (VIMSS) strong 32 94
  Alteromonas macleodii MIT1002 MIT1002_00109 Putative reactive intermediate deaminase TdcF strong 32 99
  Paraburkholderia graminis OAS925 ABIE53_000758 reactive intermediate/imine deaminase strong 36 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_179 Endoribonuclease L-PSP no data 34 85
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS20925 endoribonuclease L-PSP strong 35 95
  Ralstonia solanacearum UW163 UW163_RS22060 endoribonuclease L-PSP insig. 35 95
  Burkholderia phytofirmans PsJN BPHYT_RS03130 hypothetical protein insig. 36 83
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS16740 RidA family protein strong 32 95
  Sinorhizobium meliloti 1021 SM_b21157 translation initiation inhibitor protein insig. 37 86
  Rhizobium sp. OAE497 ABIE40_RS21405 RidA family protein insig. 36 88
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS11845 RidA family protein strong 33 92
  Paraburkholderia sabiae LMG 24235 QEN71_RS01965 RidA family protein insig. 36 83
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02020 RidA family protein insig. 31 94
  Desulfovibrio vulgaris Hildenborough JW710 DVU0620 endoribonuclease, L-PSP family (TIGR) insig. 32 88
  Kangiella aquimarina DSM 16071 B158DRAFT_0573 endoribonuclease L-PSP, putative sig. 31 92
  Herbaspirillum seropedicae SmR1 HSERO_RS08735 hypothetical protein insig. 36 84
  Serratia liquefaciens MT49 IAI46_02310 RidA family protein insig. 36 81
  Shewanella oneidensis MR-1 SO1404 endoribonuclease L-PSP, putative (NCBI ptt file) insig. 28 92
  Erwinia amylovora T8 OLJFJH_07320 2-iminobutanoate/2-iminopropanoate deaminase strong 31 95
  Klebsiella pneumoniae MKP103 KDGMDA_12165 reactive intermediate/imine deaminase insig. 37 81
  Klebsiella pneumoniae MRSN742743 KFA93_RS10680 RidA family protein insig. 37 81
  Sinorhizobium meliloti 1021 SMa2289 hypothetical protein insig. 29 98
  Dinoroseobacter shibae DFL-12 Dshi_0720 Endoribonuclease L-PSP (RefSeq) sig. 33 93
  Shewanella loihica PV-4 Shew_3500 putative endoribonuclease L-PSP (RefSeq) strong 30 92
  Shewanella sp. ANA-3 Shewana3_2971 putative endoribonuclease L-PSP (RefSeq) sig. 28 92
  Pseudomonas fluorescens FW300-N2E3 AO353_24440 reactive intermediate/imine deaminase insig. 31 95
  Agrobacterium fabrum C58 Atu3926 translation initiation inhibitor insig. 32 86
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08965 2-iminobutanoate/2-iminopropanoate deaminase strong 31 95
  Pantoea sp. MT58 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase strong 30 95