Homologs of Echvi_4051 from Echinicola vietnamensis KMM 6221, DSM 17526

ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4051 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) insig. 100 100
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS04805 UvrD-helicase domain-containing protein strong 34 98
o Bacteroides ovatus ATCC 8483 BACOVA_04090 UvrD/REP helicase no data 31 98
o Bacteroides thetaiotaomicron VPI-5482 BT1054 ATP-dependent helicase (NCBI ptt file) no data 31 98
o Phocaeicola dorei CL03T12C01 ABI39_RS17615 UvrD-helicase domain-containing protein no data 32 99
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03535 UvrD-helicase domain-containing protein cofit 32 99
o Bacteroides stercoris CC31F HMPREF1181_RS15235 UvrD-helicase domain-containing protein cofit 30 98
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS18830 DNA helicase UvrD strong 29 98
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05920 hypothetical protein no data 27 99
o Cellulophaga baltica 18 M666_RS04125 UvrD-helicase domain-containing protein cofit 30 97
  Desulfovibrio vulgaris Hildenborough JW710 DVU2062 ATP-dependent DNA helicase, UvrD/REP family (TIGR) sig. 27 42
  Desulfovibrio vulgaris Miyazaki F DvMF_0764 UvrD/REP helicase (RefSeq) insig. 27 39
  Shewanella sp. ANA-3 Shewana3_2246 exodeoxyribonuclease V, beta subunit (RefSeq) no data 24 70
  Methylophilus sp. DMC18 GFF360 RecBCD enzyme subunit RecB cofit 27 44
  Ralstonia solanacearum PSI07 RPSI07_RS18225 ATP-dependent exonuclease no data 24 43
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15145 ATP-dependent exonuclease no data 23 43
  Ralstonia solanacearum UW163 UW163_RS12615 ATP-dependent exonuclease no data 23 43
  Ralstonia solanacearum GMI1000 RS_RS05965 ATP-dependent exonuclease no data 24 43
  Ralstonia sp. UNC404CL21Col ABZR87_RS10785 exodeoxyribonuclease V subunit beta strong 23 43
  Pseudomonas sp. SVBP6 COO64_RS02680 recB exodeoxyribonuclease V subunit beta insig. 25 43
  Pseudomonas putida KT2440 PP_4673 Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease no data 26 42
  Pseudomonas sp. BP01 JOY50_RS27635 recB exodeoxyribonuclease V subunit beta no data 24 42
  Escherichia coli ECRC100 OKFHMN_20050 recB exodeoxyribonuclease V subunit beta no data 23 76
  Escherichia coli ECRC101 MCAODC_10575 recB exodeoxyribonuclease V subunit beta no data 23 76
  Escherichia coli ECRC102 NIAGMN_17820 recB exodeoxyribonuclease V subunit beta no data 23 76
  Escherichia coli ECRC98 JDDGAC_23715 recB exodeoxyribonuclease V subunit beta no data 23 76
  Escherichia coli ECRC99 KEDOAH_08080 recB exodeoxyribonuclease V subunit beta no data 23 76
  Escherichia coli ECOR27 NOLOHH_11935 recB exodeoxyribonuclease V subunit beta no data 23 76
  Escherichia fergusonii Becca EFB2_01064 RecBCD enzyme subunit RecB strong 23 76
  Escherichia coli Nissle 1917 ECOLIN_RS15830 exodeoxyribonuclease V subunit beta no data 23 76
  Escherichia coli ECOR38 HEPCGN_19305 recB exodeoxyribonuclease V subunit beta strong 23 76
  Kangiella aquimarina DSM 16071 B158DRAFT_2168 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) strong 24 41
  Shewanella amazonensis SB2B Sama_1901 exodeoxyribonuclease V, beta subunit (RefSeq) no data 25 42
  Escherichia coli BL21 ECD_02668 exonuclease V (RecBCD complex), beta subunit no data 22 76
  Escherichia coli ECRC62 BNILDI_10415 recB exodeoxyribonuclease V subunit beta insig. 22 76
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00910 RecBCD enzyme subunit RecB no data 22 76
  Escherichia coli BW25113 b2820 recB exonuclease V (RecBCD complex), beta subunit (NCBI) strong 22 76
  Shewanella oneidensis MR-1 SO2148 recB exodeoxyribonuclease V, beta subunit (NCBI ptt file) no data 25 42
  Shewanella loihica PV-4 Shew_2130 exodeoxyribonuclease V, beta subunit (RefSeq) no data 24 39
  Pseudomonas aeruginosa PA14 IKLFDK_02690 exodeoxyribonuclease V subunit beta no data 24 48
  Dechlorosoma suillum PS Dsui_3214 ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing no data 29 24
  Pseudomonas syringae pv. syringae B728a Psyr_0681 DNA helicase/exodeoxyribonuclease V, beta subunit no data 24 42
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0681 DNA helicase/exodeoxyribonuclease V, beta subunit no data 24 42
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0292 Superfamily I DNA and RNA helicases no data 25 36
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3460 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) insig. 24 42
  Marinobacter adhaerens HP15 HP15_3713 exodeoxyribonuclease V, beta subunit no data 24 42
  Paraburkholderia sabiae LMG 24235 QEN71_RS23190 exodeoxyribonuclease V subunit beta insig. 23 44
  Dinoroseobacter shibae DFL-12 Dshi_3438 Double-strand break repair helicase AddA (RefSeq) no data 22 75
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS17000 exodeoxyribonuclease V subunit beta no data 25 38
  Pseudomonas sp. DMC3 GFF4913 RecBCD enzyme subunit RecB sig. 25 42
  Fusobacterium nucleatum SB010 HUW76_07175 UvrD-helicase domain-containing protein strong 24 37
  Pseudomonas aeruginosa PA14 IKLFDK_26970 DNA helicase Rep no data 27 23
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4243 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) strong 22 56
  Magnetospirillum magneticum AMB-1 AMB_RS21065 double-strand break repair helicase AddA no data 24 45
  Pantoea sp. MT58 IAI47_03965 exodeoxyribonuclease V subunit beta no data 25 38
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1301 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) no data 24 41
  Lysobacter sp. OAE881 ABIE51_RS01025 exodeoxyribonuclease V subunit beta strong 29 14
  Pseudomonas fluorescens FW300-N2C3 AO356_07915 exodeoxyribonuclease V subunit beta sig. 24 42
  Pseudomonas syringae pv. syringae B728a Psyr_0075 ATP-dependent DNA helicase Rep no data 28 23
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0075 ATP-dependent DNA helicase Rep no data 28 23
  Rhizobium sp. OAE497 ABIE40_RS19360 double-strand break repair helicase AddA strong 24 45
  Pseudomonas sp. SVBP6 COO64_RS01360 rep DNA helicase Rep no data 28 23
  Fusobacterium nucleatum SB010 HUW76_05850 UvrD-helicase domain-containing protein cofit 23 62
  Pseudomonas fluorescens FW300-N2E3 AO353_06045 exodeoxyribonuclease V subunit beta strong 24 47
  Phaeobacter inhibens DSM 17395 PGA1_c35310 double strand break repair helicase AddA no data 23 42
  Mycobacterium tuberculosis H37Rv Rv3198c Probable ATP-dependent DNA helicase II UvrD2 insig. 26 23
  Klebsiella michiganensis M5al BWI76_RS23230 exodeoxyribonuclease V subunit beta strong 24 44
  Burkholderia phytofirmans PsJN BPHYT_RS07975 exodeoxyribonuclease V subunit beta no data 25 37
  Desulfovibrio vulgaris Miyazaki F DvMF_0764 UvrD/REP helicase (RefSeq) insig. 33 13
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00001 ATP-dependent DNA helicase Rep no data 27 23
  Pseudomonas simiae WCS417 PS417_23775 exodeoxyribonuclease V subunit beta strong 23 42
  Kangiella aquimarina DSM 16071 B158DRAFT_0352 ATP-dependent DNA helicase Rep (EC 3.6.1.-) strong 27 24
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4027 DNA helicase/exodeoxyribonuclease V, subunit A (EC 3.1.11.5) no data 23 64
  Pseudomonas stutzeri RCH2 Psest_3778 ATP-dependent DNA helicase Rep no data 29 23
  Xanthobacter sp. DMC5 GFF3566 ATP-dependent DNA helicase PcrA insig. 23 37
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1235 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) sig. 23 47
  Cupriavidus basilensis FW507-4G11 RR42_RS13295 ATP-dependent exonuclease no data 27 16
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2151 ATP-dependent DNA helicase Rep no data 28 23
  Pseudomonas sp. RS175 PFR28_04392 ATP-dependent DNA helicase Rep no data 27 23
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4398 ATP-dependent DNA helicase Rep no data 27 24
  Enterobacter asburiae PDN3 EX28DRAFT_2895 DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5) no data 25 41
  Pseudomonas fluorescens FW300-N2C3 AO356_12655 ATP-dependent DNA helicase Rep no data 27 24
  Pseudomonas fluorescens GW456-L13 PfGW456L13_819 ATP-dependent DNA helicase Rep no data 28 23
  Pseudomonas sp. DMC3 GFF383 ATP-dependent DNA helicase Rep no data 27 23
  Pseudomonas putida KT2440 PP_5264 helicase a single-stranded DNA dependent ATPase no data 27 23
  Pseudomonas fluorescens SBW25 PFLU_RS29345 DNA helicase Rep no data 27 23
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29345 DNA helicase Rep no data 27 23
  Pseudomonas simiae WCS417 PS417_27670 ATP-dependent DNA helicase Rep no data 27 23
  Lysobacter sp. OAE881 ABIE51_RS01985 DNA helicase II strong 31 12
  Pseudomonas sp. BP01 JOY50_RS09155 rep DNA helicase Rep no data 27 23
  Pseudomonas fluorescens FW300-N2E3 AO353_09120 ATP-dependent DNA helicase Rep no data 27 23
  Agrobacterium fabrum C58 Atu0023 ATP-dependant DNA helicase no data 22 69
  Erwinia amylovora T8 OLJFJH_09100 exodeoxyribonuclease V subunit beta no data 24 45
  Caulobacter crescentus NA1000 CCNA_03652 ATP-dependent nuclease subunit A strong 36 10
  Caulobacter crescentus NA1000 Δfur CCNA_03652 ATP-dependent nuclease subunit A cofit 36 10
  Shewanella amazonensis SB2B Sama_0419 uvrD DNA-dependent helicase II (RefSeq) strong 29 12
  Pseudomonas segetis P6 MPMX49_00001 ATP-dependent DNA helicase Rep no data 27 23
  Pseudomonas sp. RS175 PFR28_00007 RecBCD enzyme subunit RecB insig. 23 43
  Pseudomonas fluorescens SBW25 PFLU_RS25590 exodeoxyribonuclease V subunit beta strong 22 44
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25590 exodeoxyribonuclease V subunit beta no data 22 44