Homologs of Dshi_3583 from Dinoroseobacter shibae DFL-12

sigma 54 modulation protein/ribosomal protein S30EA (RefSeq)
SEED: Ribosomal subunit interface protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dinoroseobacter shibae DFL-12 Dshi_3583 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) sig. 100 100
o Phaeobacter inhibens DSM 17395 PGA1_c35970 putative sigma(54) modulation protein sig. 78 97
o Azospirillum brasilense Sp245 AZOBR_RS18875 ribose ABC transporter permease strong 46 97
o Azospirillum sp. SherDot2 MPMX19_02669 Ribosome hibernation promotion factor no data 46 97
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS16080 ribosome-associated translation inhibitor RaiA insig. 39 97
o Sinorhizobium meliloti 1021 SMc01140 SIGMA54 modulation protein no data 37 97
o Rhodopseudomonas palustris CGA009 TX73_000265 ribosome-associated translation inhibitor RaiA cofit 38 97
o Agrobacterium fabrum C58 Atu0331 sigma-54 modulation protein strong 37 98
o Caulobacter crescentus NA1000 CCNA_03711 ribosome-associated factor Y strong 38 97
o Caulobacter crescentus NA1000 Δfur CCNA_03711 ribosome-associated factor Y cofit 38 97
o Rhizobium sp. OAE497 ABIE40_RS01865 ribosome-associated translation inhibitor RaiA sig. 34 97
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2191 ribosomal subunit interface protein strong 36 97
o Bosea sp. OAE506 ABIE41_RS00120 ribosome-associated translation inhibitor RaiA insig. 43 97
o Synechococcus elongatus PCC 7942 Synpcc7942_2352 lrtA sigma 54 modulation protein / SSU ribosomal protein S30P insig. 28 97
  Lysobacter sp. OAE881 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA cofit 35 52
o Fusobacterium nucleatum SB010 HUW76_07850 ribosome-associated translation inhibitor RaiA strong 28 97
o Desulfovibrio vulgaris Miyazaki F DvMF_0426 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 26 97
  Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 33 51
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 34 51
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 34 51
o Desulfovibrio vulgaris Hildenborough JW710 DVU1629 yfiA ribosomal subunit interface protein (TIGR) strong 29 97
  Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 34 51
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers cofit 33 51
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 33 51
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor cofit 33 51
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 33 51
  Escherichia coli ECRC101 OKFHMN_17935 Ribosome hibernation promoting factor insig. 33 51
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor insig. 33 51
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 33 51
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor sig. 33 51
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor no data 33 51
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 33 51
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 33 51
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 33 51
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 33 51
  Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 32 51
  Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 32 51
  Rhodanobacter sp. FW510-T8 OKGIIK_02260 raiA ribosomal subunit interface protein strong 30 53
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 31 51
  Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor insig. 33 51
  Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 30 52
  Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 32 51
  Erwinia tracheiphila SCR3 LU632_RS21285 hpf ribosome hibernation promoting factor insig. 29 51
  Rhodanobacter denitrificans MT42 LRK55_RS12570 ribosome-associated translation inhibitor RaiA insig. 28 52
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12870 ribosome-associated translation inhibitor RaiA strong 28 52
  Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 29 51
  Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 28 49
  Klebsiella michiganensis M5al BWI76_RS25270 ribosome hibernation promoting factor sig. 28 51
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 29 49
  Rahnella sp. WP5 EX31_RS07580 ribosome-associated translation inhibitor RaiA insig. 28 49
  Mycobacterium tuberculosis H37Rv Rv3241c Conserved protein insig. 31 66
  Dickeya dadantii 3937 DDA3937_RS16120 ribosome-associated translation inhibitor RaiA insig. 33 49
  Pectobacterium carotovorum WPP14 HER17_RS05390 ribosome-associated translation inhibitor RaiA cofit 31 49
  Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 27 58
  Dickeya dianthicola 67-19 HGI48_RS16245 ribosome-associated translation inhibitor RaiA insig. 33 49
  Dickeya dianthicola ME23 DZA65_RS17340 ribosome-associated translation inhibitor RaiA insig. 33 49
  Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 28 51
  Pseudomonas fluorescens SBW25 PFLU_RS04395 ribosome-associated translation inhibitor RaiA cofit 26 49
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04395 ribosome-associated translation inhibitor RaiA strong 26 49
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 28 49
  Serratia liquefaciens MT49 IAI46_03975 ribosome-associated translation inhibitor RaiA insig. 33 49
  Pantoea sp. MT58 IAI47_04415 ribosome-associated translation inhibitor RaiA insig. 30 49
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 27 49
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA sig. 26 52
  Pseudomonas syringae pv. syringae B728a Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 27 49
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P insig. 27 49
  Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 28 55
  Ralstonia sp. UNC404CL21Col ABZR87_RS07055 ribosome-associated translation inhibitor RaiA strong 25 58
  Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 31 49
  Ralstonia solanacearum PSI07 RPSI07_RS22135 ribosomal subunit interface protein strong 25 58
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11165 ribosomal subunit interface protein strong 26 57
  Ralstonia solanacearum UW163 UW163_RS02415 ribosomal subunit interface protein sig. 26 57
  Vibrio cholerae E7946 ATCC 55056 CSW01_12820 ribosome hibernation promoting factor insig. 25 51
  Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 25 49
  Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 24 51
  Enterobacter asburiae PDN3 EX28DRAFT_2697 ribosomal subunit interface protein cofit 29 49
  Enterobacter sp. TBS_079 MPMX20_03465 Ribosome-associated inhibitor A insig. 29 49
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4180 Ribosome hibernation protein YfiA insig. 29 49
  Escherichia coli BL21 ECD_02486 cold shock protein associated with 30S ribosomal subunit insig. 26 49
  Escherichia fergusonii Becca EFB2_01294 Ribosome-associated inhibitor A insig. 26 49
  Escherichia coli ECOR27 NOLOHH_12910 raiA ribosome-associated translation inhibitor RaiA cofit 26 49
  Escherichia coli ECOR38 HEPCGN_20355 raiA ribosome-associated translation inhibitor RaiA cofit 26 49
  Escherichia coli ECRC101 OKFHMN_21235 raiA ribosome-associated translation inhibitor RaiA insig. 26 49
  Escherichia coli ECRC101 MCAODC_11765 raiA ribosome-associated translation inhibitor RaiA insig. 26 49
  Escherichia coli ECRC102 NIAGMN_19005 raiA ribosome-associated translation inhibitor RaiA insig. 26 49
  Escherichia coli ECRC62 BNILDI_11715 raiA ribosome-associated translation inhibitor RaiA insig. 26 49
  Escherichia coli ECRC98 JDDGAC_24900 raiA ribosome-associated translation inhibitor RaiA no data 26 49
  Escherichia coli ECRC99 KEDOAH_06985 raiA ribosome-associated translation inhibitor RaiA no data 26 49
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01110 Ribosome-associated inhibitor A insig. 26 49
  Escherichia coli Nissle 1917 ECOLIN_RS14690 ribosome-associated translation inhibitor RaiA no data 26 49
  Escherichia coli BW25113 b2597 yfiA cold shock protein associated with 30S ribosomal subunit (NCBI) strong 26 49
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 26 49
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 26 49
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 26 49
  Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 28 51
  Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 26 51
  Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 28 51
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 28 51
  Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 26 51
  Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 26 51