Conservation of cofitness between Xcc-8004.4214.1 and Xcc-8004.2224.1 in Xanthomonas campestris pv. campestris strain 8004

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4214.1 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) 1.0 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.51 16
Lysobacter sp. OAE881 0.65 ABIE51_RS05520 nitroreductase 0.80 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_10710 Putative NAD(P)H nitroreductase 0.75 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 52
Rhodanobacter denitrificans MT42 0.51 LRK55_RS03610 nitroreductase 0.75 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS03860 nitroreductase 0.74 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 59
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS22155 nitroreductase 0.76 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Agrobacterium fabrum C58 0.41 Atu1744 nitroreductase family protein 0.41 Atu0356 miaB protein low > 89
Rhizobium sp. OAE497 0.39 ABIE40_RS09685 nitroreductase 0.42 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 107
Bosea sp. OAE506 0.39 ABIE41_RS14115 nitroreductase 0.43 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Rhodopseudomonas palustris CGA009 0.38 TX73_017620 nitroreductase 0.38 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_03990 nitroreductase 0.61 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_2633 Nitroreductase family protein 0.61 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase low > 103
Pseudomonas stutzeri RCH2 0.37 Psest_1881 Nitroreductase 0.63 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 67
Pseudomonas sp. RS175 0.37 PFR28_00799 Putative NAD(P)H nitroreductase YdjA 0.61 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 88
Sinorhizobium meliloti 1021 0.35 SMc01012 hypothetical protein 0.43 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase low > 103
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_4412 Nitroreductase family protein 0.61 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase low > 87
Pseudomonas sp. S08-1 0.34 OH686_20760 Putative NAD(P)H nitroreductase YdjA 0.63 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 80
Dinoroseobacter shibae DFL-12 0.33 Dshi_2627 nitroreductase (RefSeq) 0.44 Dshi_1019 RNA modification enzyme, MiaB family (RefSeq) low > 64
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_3544 Nitroreductase family protein 0.61 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase low > 87
Pseudomonas simiae WCS417 0.33 PS417_22730 nitroreductase 0.61 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_3592 Nitroreductase 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_3592 Nitroreductase 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 86
Pseudomonas fluorescens SBW25 0.33 PFLU_RS24370 NAD(P)H nitroreductase 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS24370 NAD(P)H nitroreductase 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Caulobacter crescentus NA1000 0.32 CCNA_02736 nitroreductase family 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_02736 nitroreductase family 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase low > 67
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS35735 nitroreductase 0.62 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 109
Variovorax sp. SCN45 0.32 GFF205 Nitroreductase family protein 0.61 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) low > 127
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS08265 nitroreductase 0.38 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 48
Enterobacter asburiae PDN3 0.30 EX28DRAFT_1766 Nitroreductase 0.61 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 76
Phaeobacter inhibens DSM 17395 0.30 PGA1_c24460 putative nitroreductase 0.41 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB low > 62
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_04933 Nitroreductase 0.62 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 103
Shewanella loihica PV-4 0.29 Shew_1740 nitroreductase (RefSeq) 0.61 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) — —
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_18485 nitroreductase 0.61 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase low > 101
Escherichia coli ECOR27 0.29 NOLOHH_17330 ydjA NAD(P)H nitroreductase 0.62 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli ECRC102 0.29 NIAGMN_01245 ydjA NAD(P)H nitroreductase 0.62 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01967 Putative NAD(P)H nitroreductase YdjA 0.62 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 73
Escherichia coli ECRC99 0.29 KEDOAH_01290 ydjA NAD(P)H nitroreductase 0.62 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC98 0.29 JDDGAC_01395 ydjA NAD(P)H nitroreductase 0.62 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Escherichia coli ECOR38 0.29 HEPCGN_05190 ydjA NAD(P)H nitroreductase 0.62 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 87
Escherichia coli ECRC101 0.29 MCAODC_18590 ydjA NAD(P)H nitroreductase 0.62 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 87
Escherichia coli BL21 0.29 ECD_01734 putative oxidoreductase 0.62 ECD_00629 tRNA-i(6)A37 methylthiotransferase — —
Escherichia coli ECRC62 0.29 BNILDI_16115 ydjA NAD(P)H nitroreductase 0.62 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli ECRC100 0.29 OKFHMN_26820 ydjA NAD(P)H nitroreductase 0.62 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Escherichia coli BW25113 0.29 b1765 ydjA predicted oxidoreductase (NCBI) 0.62 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) low > 76
Escherichia coli Nissle 1917 0.29 ECOLIN_RS09845 NAD(P)H nitroreductase 0.62 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia fergusonii Becca 0.29 EFB2_02229 Putative NAD(P)H nitroreductase YdjA 0.62 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 86
Shewanella oneidensis MR-1 0.28 SO2708 nitroreductase family protein (NCBI ptt file) 0.61 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.28 Shewana3_2494 nitroreductase (RefSeq) 0.61 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 73
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1311 Nitroreductase 0.38 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 68
Enterobacter sp. TBS_079 0.27 MPMX20_01851 Putative NAD(P)H nitroreductase YdjA 0.62 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 85
Marinobacter adhaerens HP15 0.27 HP15_1466 nitroreductase family protein 0.64 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3484 FIG002003: Protein YdjA 0.62 GFF4579 tRNA-i(6)A37 methylthiotransferase low > 78
Shewanella amazonensis SB2B 0.26 Sama_1457 nitroreductase family protein (RefSeq) 0.61 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) low > 62
Pantoea sp. MT58 0.26 IAI47_08975 NAD(P)H nitroreductase 0.62 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Erwinia tracheiphila SCR3 0.26 LU632_RS12965 NAD(P)H nitroreductase 0.62 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Azospirillum brasilense Sp245 0.26 AZOBR_RS29250 oxidoreductase 0.43 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF5438 Nitroreductase family protein 0.60 GFF613 tRNA-i(6)A37 methylthiotransferase low > 90
Klebsiella michiganensis M5al 0.26 BWI76_RS11590 NAD(P)H nitroreductase 0.62 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Serratia liquefaciens MT49 0.25 IAI46_14320 NAD(P)H nitroreductase 0.62 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Rahnella sp. WP5 0.25 EX31_RS06310 NAD(P)H nitroreductase 0.61 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 89
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_05335 NAD(P)H nitroreductase 0.60 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Dickeya dadantii 3937 0.25 DDA3937_RS10295 NAD(P)H nitroreductase 0.61 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Dickeya dianthicola 67-19 0.24 HGI48_RS10305 NAD(P)H nitroreductase 0.61 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 71
Dickeya dianthicola ME23 0.24 DZA65_RS10780 NAD(P)H nitroreductase 0.61 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Alteromonas macleodii MIT1002 0.24 MIT1002_01842 Putative NAD(P)H nitroreductase YdjA 0.62 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB low > 70
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_1412 Nitroreductase 0.63 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 40
Pectobacterium carotovorum WPP14 0.23 HER17_RS11100 NAD(P)H nitroreductase 0.61 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Castellaniella sp019104865 MT123 0.22 ABCV34_RS04210 nitroreductase 0.64 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 48
Acidovorax sp. GW101-3H11 0.21 Ac3H11_4500 nitroreductase 0.61 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase — —
Acinetobacter radioresistens SK82 0.21 MPMX26_01115 Putative NAD(P)H nitroreductase YdjA 0.56 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.45 25
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1235 Nitroreductase 0.29 Echvi_2376 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_09355 nitroreductase 0.29 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.15 CA265_RS12860 nitroreductase 0.28 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 88

Not shown: 2 genomes with orthologs for Xcc-8004.4214.1 only; 28 genomes with orthologs for Xcc-8004.2224.1 only