Conservation of cofitness between TX73_016655 and TX73_023285 in Rhodopseudomonas palustris CGA009

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_016655 replication-associated recombination protein A 1.0 TX73_023285 A/G-specific adenine glycosylase 0.44 6
Sinorhizobium meliloti 1021 0.77 SMc01279 recombination factor protein RarA 0.48 SMc00452 A/G-specific adenine glycosylase low > 103
Agrobacterium fabrum C58 0.74 Atu1914 ATPase, AAA family protein 0.48 Atu0798 A/G-specific adenine glycosylase low > 89
Rhizobium sp. OAE497 0.73 ABIE40_RS08045 replication-associated recombination protein A 0.44 ABIE40_RS04290 A/G-specific adenine glycosylase low > 107
Bosea sp. OAE506 0.73 ABIE41_RS14690 replication-associated recombination protein A 0.55 ABIE41_RS22845 A/G-specific adenine glycosylase low > 77
Azospirillum sp. SherDot2 0.66 MPMX19_01528 Replication-associated recombination protein A 0.47 MPMX19_04892 Adenine DNA glycosylase low > 112
Azospirillum brasilense Sp245 0.64 AZOBR_RS06885 ATPase AAA 0.44 AZOBR_RS20275 adenine glycosylase low > 97
Rhodospirillum rubrum S1H 0.63 Rru_A2660 AAA ATPase, central region (NCBI) 0.41 Rru_A3251 A/G-specific adenine glycosylase MutY (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS07890 replication-associated recombination protein A 0.39 A4249_RS01570 A/G-specific adenine glycosylase low > 48
Dinoroseobacter shibae DFL-12 0.60 Dshi_0313 AAA ATPase central domain protein (RefSeq) 0.36 Dshi_0028 A/G-specific adenine glycosylase (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.59 CCNA_01342 ATPase, AAA family 0.37 CCNA_00381 A/G-specific adenine DNA glycosylase low > 67
Caulobacter crescentus NA1000 0.59 CCNA_01342 ATPase, AAA family 0.37 CCNA_00381 A/G-specific adenine DNA glycosylase low > 66
Phaeobacter inhibens DSM 17395 0.59 PGA1_c01930 replication-associated recombination protein A 0.37 PGA1_c33540 A/G-specific adenine glycosylase MutY low > 62
Magnetospirillum magneticum AMB-1 0.57 AMB_RS17620 replication-associated recombination protein A 0.45 AMB_RS20165 A/G-specific adenine glycosylase low > 64
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.29 B158DRAFT_0205 A/G-specific DNA-adenine glycosylase (EC 3.2.2.-) low > 40
Pseudomonas sp. S08-1 0.47 OH686_00270 Replication-associated recombination protein RarA 0.30 OH686_14550 A/G-specific adenine glycosylase low > 80
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_3177 Recombination protein MgsA 0.30 Psyr_4901 A/G-specific DNA-adenine glycosylase low > 86
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_27640 recombination factor protein RarA 0.29 AO353_12050 A/G-specific adenine glycosylase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_3177 Recombination protein MgsA 0.30 Psyr_4901 A/G-specific DNA-adenine glycosylase low > 86
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_22185 recombination factor protein RarA 0.28 AO356_09830 A/G-specific adenine glycosylase low > 104
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.28 Pf1N1B4_1631 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 87
Pseudomonas stutzeri RCH2 0.46 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.27 Psest_0145 A/G-specific adenine glycosylase low > 67
Pseudomonas simiae WCS417 0.46 PS417_16480 recombination factor protein RarA 0.29 PS417_01545 adenine glycosylase low > 88
Pseudomonas putida KT2440 0.46 PP_4002 DNA-dependent ATPase required for recombination 0.30 PP_0286 adenine glycosylase low > 96
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.28 PfGW456L13_366 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 87
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS18520 replication-associated recombination protein A 0.29 PFLU_RS01590 A/G-specific adenine glycosylase low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS18520 replication-associated recombination protein A 0.29 PFLU_RS01590 A/G-specific adenine glycosylase low > 109
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_07580 rarA recombination factor protein RarA 0.25 OKGIIK_02565 mutY A/G-specific adenine glycosylase low > 52
Paraburkholderia graminis OAS925 0.45 ABIE53_001292 putative ATPase 0.32 ABIE53_000712 A/G-specific adenine glycosylase low > 113
Rhodanobacter denitrificans MT42 0.44 LRK55_RS17545 replication-associated recombination protein A 0.24 LRK55_RS13065 A/G-specific adenine glycosylase low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS17320 replication-associated recombination protein A 0.25 LRK54_RS13325 A/G-specific adenine glycosylase low > 59
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS01825 replication-associated recombination protein A 0.26 ABZR86_RS19975 A/G-specific adenine glycosylase low > 74
Shewanella loihica PV-4 0.44 Shew_2022 recombination factor protein RarA (RefSeq) 0.29 Shew_1123 A/G-specific adenine glycosylase (RefSeq) low > 60
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS04355 recombination factor protein RarA 0.28 RR42_RS02050 adenine glycosylase low > 128
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS05100 ATPase AAA 0.31 BPHYT_RS02875 adenine glycosylase low > 109
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS03415 replication-associated recombination protein A 0.29 QEN71_RS01725 A/G-specific adenine glycosylase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00180 Recombination protein MgsA 0.32 H281DRAFT_01933 A/G-specific DNA-adenine glycosylase low > 103
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS16030 replication-associated recombination protein A 0.29 ABZR87_RS07025 A/G-specific adenine glycosylase low > 80
Dechlorosoma suillum PS 0.43 Dsui_1694 AAA ATPase 0.30 Dsui_0998 A/G-specific adenine glycosylase low > 51
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS09515 ATPase AAA 0.31 HSERO_RS19540 adenine glycosylase low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS09670 recombination factor protein RarA 0.30 BWI76_RS24155 A/G-specific adenine glycosylase low > 92
Variovorax sp. SCN45 0.43 GFF6034 Replication-associated recombination protein RarA 0.27 GFF2355 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 127
Ralstonia solanacearum UW163 0.43 UW163_RS09525 replication-associated recombination protein A 0.28 UW163_RS02445 A/G-specific adenine glycosylase — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS04145 replication-associated recombination protein A 0.28 RALBFv3_RS11135 A/G-specific adenine glycosylase low > 76
Ralstonia solanacearum PSI07 0.43 RPSI07_RS13205 replication-associated recombination protein A 0.30 RPSI07_RS22165 A/G-specific adenine glycosylase low > 81
Enterobacter sp. TBS_079 0.43 MPMX20_01554 Replication-associated recombination protein A 0.29 MPMX20_03818 Adenine DNA glycosylase low > 85
Serratia liquefaciens MT49 0.43 IAI46_08570 replication-associated recombination protein A 0.31 IAI46_21465 A/G-specific adenine glycosylase low > 86
Variovorax sp. OAS795 0.43 ABID97_RS07835 replication-associated recombination protein A 0.26 ABID97_RS23715 A/G-specific adenine glycosylase low > 91
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.30 EX28DRAFT_2998 A/G-specific DNA-adenine glycosylase (EC 3.2.2.-) low > 76
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.27 Ac3H11_3458 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF4896 FIG065221: Holliday junction DNA helicase 0.29 GFF3065 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 78
Escherichia coli ECOR38 0.42 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.30 HEPCGN_18470 mutY A/G-specific adenine glycosylase low > 87
Escherichia coli ECRC62 0.42 BNILDI_20385 rarA replication-associated recombination protein RarA 0.30 BNILDI_09645 mutY A/G-specific adenine glycosylase low > 75
Escherichia coli ECOR27 0.42 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.30 NOLOHH_11060 mutY A/G-specific adenine glycosylase low > 75
Escherichia coli ECRC99 0.42 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.30 KEDOAH_08940 mutY A/G-specific adenine glycosylase — —
Escherichia coli ECRC101 0.42 MCAODC_24950 rarA replication-associated recombination protein RarA 0.30 MCAODC_09720 mutY A/G-specific adenine glycosylase low > 87
Escherichia coli Nissle 1917 0.42 ECOLIN_RS04745 replication-associated recombination protein RarA 0.30 ECOLIN_RS16470 A/G-specific adenine glycosylase low > 55
Escherichia coli BL21 0.42 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.30 ECD_02791 adenine DNA glycosylase low > 61
Escherichia coli BW25113 0.42 b0892 ycaJ recombination protein (NCBI) 0.30 b2961 mutY adenine DNA glycosylase (NCBI) low > 76
Escherichia coli ECRC100 0.42 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.30 OKFHMN_19200 mutY A/G-specific adenine glycosylase low > 80
Escherichia fergusonii Becca 0.42 EFB2_03169 Replication-associated recombination protein A 0.30 EFB2_00941 Adenine DNA glycosylase low > 86
Escherichia coli ECRC102 0.42 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.30 NIAGMN_16965 mutY A/G-specific adenine glycosylase — —
Escherichia coli ECRC98 0.42 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.30 JDDGAC_22830 mutY A/G-specific adenine glycosylase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_02776 Replication-associated recombination protein A 0.30 OHPLBJKB_00755 Adenine DNA glycosylase low > 73
Erwinia tracheiphila SCR3 0.42 LU632_RS09755 replication-associated recombination protein A 0.29 LU632_RS05420 mutY A/G-specific adenine glycosylase low > 74
Pantoea sp. MT58 0.42 IAI47_12900 replication-associated recombination protein A 0.29 IAI47_03560 A/G-specific adenine glycosylase low > 76
Alteromonas macleodii MIT1002 0.40 MIT1002_02178 Replication-associated recombination protein A 0.27 MIT1002_00239 A/G-specific adenine glycosylase low > 70
Lysobacter sp. OAE881 0.40 ABIE51_RS11445 replication-associated recombination protein A 0.28 ABIE51_RS15140 A/G-specific adenine glycosylase low > 62
Bacteroides ovatus ATCC 8483 0.39 BACOVA_03971 ATPase, AAA family 0.26 BACOVA_04228 A/G-specific adenine glycosylase low > 94
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_4603 ATPase related to the helicase subunit of the Holliday junction resolvase 0.30 Echvi_1248 A/G-specific adenine glycosylase 0.24 56
Bacteroides thetaiotaomicron VPI-5482 0.38 BT1205 putative ATPase, AAA family (NCBI ptt file) 0.27 BT1498 A/G-specific adenine glycosylase (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS20285 replication-associated recombination protein A 0.28 ABZR88_RS20430 A/G-specific adenine glycosylase low > 71
Acinetobacter radioresistens SK82 0.38 MPMX26_02987 Replication-associated recombination protein A 0.32 MPMX26_02995 Adenine DNA glycosylase low > 36
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS15395 replication-associated recombination protein A 0.28 HMPREF1078_RS14175 A/G-specific adenine glycosylase low > 61
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0339 recombination factor protein RarA (RefSeq) 0.28 DvMF_1921 A/G-specific adenine glycosylase (RefSeq) low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF777 FIG065221: Holliday junction DNA helicase 0.25 GFF827 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 90
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU1686 ATPase, AAA family (TIGR) 0.27 DVU0282 mutY A/G-specific adenine glycosylase (TIGR) low > 55

Not shown: 23 genomes with orthologs for TX73_016655 only; 2 genomes with orthologs for TX73_023285 only