Conservation of cofitness between RR42_RS07580 and RR42_RS17385 in Cupriavidus basilensis FW507-4G11

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07580 helicase 1.0 RR42_RS17385 LysR family transcriptional regulator 0.41 13
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS01530 ATP-dependent DNA helicase 0.82 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator low > 76
Ralstonia solanacearum UW163 0.72 UW163_RS14840 ATP-dependent DNA helicase 0.82 UW163_RS08020 hydrogen peroxide-inducible genes activator — —
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS13325 ATP-dependent DNA helicase 0.84 ABZR87_RS01255 LysR substrate-binding domain-containing protein 0.33 15
Ralstonia solanacearum PSI07 0.72 RPSI07_RS15960 ATP-dependent DNA helicase 0.81 RPSI07_RS11690 hydrogen peroxide-inducible genes activator — —
Ralstonia solanacearum GMI1000 0.71 RS_RS08195 ATP-dependent DNA helicase 0.82 RS_RS13470 hydrogen peroxide-inducible genes activator low > 80
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.81 H281DRAFT_04673 transcriptional regulator, LysR family low > 103
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS12495 helicase 0.80 BPHYT_RS03470 LysR family transcriptional regulator low > 109
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS06060 ATP-dependent DNA helicase 0.81 QEN71_RS26625 LysR substrate-binding domain-containing protein low > 153
Paraburkholderia graminis OAS925 0.61 ABIE53_002724 ATP-dependent DNA helicase DinG 0.80 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator low > 113
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS14855 helicase 0.71 HSERO_RS18935 LysR family transcriptional regulator low > 78
Dechlorosoma suillum PS 0.52 Dsui_2149 DNA helicase, Rad3 0.52 Dsui_0823 transcriptional regulator low > 51
Castellaniella sp019104865 MT123 0.42 ABCV34_RS01875 ATP-dependent DNA helicase 0.67 ABCV34_RS03575 LysR substrate-binding domain-containing protein low > 48
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_2492 Rad3-related DNA helicases 0.44 B158DRAFT_0567 Transcriptional regulator 0.52 18
Dickeya dadantii 3937 0.37 DDA3937_RS11240 ATP-dependent DNA helicase 0.33 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF2823 DinG family ATP-dependent helicase YoaA 0.33 GFF2347 Hydrogen peroxide-inducible genes activator low > 78
Alteromonas macleodii MIT1002 0.37 MIT1002_02593 putative ATP-dependent helicase DinG 0.21 MIT1002_01120 Morphology and auto-aggregation control protein low > 70
Escherichia coli BL21 0.37 ECD_01778 putative ATP-dependent helicase, DinG family 0.32 ECD_03846 oxidative and nitrosative stress transcriptional regulator — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS10055 ATP-dependent DNA helicase 0.32 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01925 putative ATP-dependent helicase DinG 0.32 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator low > 73
Escherichia coli ECOR38 0.37 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA 0.32 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR low > 87
Escherichia coli ECRC62 0.37 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA 0.32 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR low > 75
Escherichia coli ECRC99 0.37 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA 0.32 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC100 0.37 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA 0.32 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR low > 80
Escherichia coli ECRC101 0.37 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA 0.32 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR low > 87
Escherichia coli ECRC102 0.37 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA 0.32 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC98 0.37 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA 0.32 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR low > 86
Escherichia coli ECOR27 0.37 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA 0.32 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR low > 75
Pantoea sp. MT58 0.37 IAI47_08820 ATP-dependent DNA helicase 0.32 IAI47_00930 DNA-binding transcriptional regulator OxyR low > 76
Dickeya dianthicola 67-19 0.37 HGI48_RS11275 ATP-dependent DNA helicase 0.33 HGI48_RS20405 DNA-binding transcriptional regulator OxyR low > 71
Rhodanobacter denitrificans MT42 0.37 LRK55_RS12465 ATP-dependent DNA helicase 0.35 LRK55_RS04545 LysR substrate-binding domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS12765 ATP-dependent DNA helicase 0.35 LRK54_RS04765 LysR substrate-binding domain-containing protein low > 59
Escherichia fergusonii Becca 0.37 EFB2_02192 putative ATP-dependent DNA helicase YoaA 0.32 EFB2_04651 Hydrogen peroxide-inducible genes activator low > 86
Dickeya dianthicola ME23 0.37 DZA65_RS11620 ATP-dependent DNA helicase 0.33 DZA65_RS21450 DNA-binding transcriptional regulator OxyR low > 75
Escherichia coli BW25113 0.37 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) 0.32 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) low > 76
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0750 Rad3-related DNA helicases 0.33 EX28DRAFT_4424 Transcriptional regulator — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_02195 dinG helicase 0.36 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR low > 52
Serratia liquefaciens MT49 0.37 IAI46_14550 ATP-dependent DNA helicase 0.32 IAI46_24475 DNA-binding transcriptional regulator OxyR low > 86
Enterobacter sp. TBS_079 0.37 MPMX20_02714 putative ATP-dependent DNA helicase YoaA 0.33 MPMX20_04519 Hydrogen peroxide-inducible genes activator low > 85
Rahnella sp. WP5 0.36 EX31_RS10615 ATP-dependent DNA helicase 0.32 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Klebsiella michiganensis M5al 0.36 BWI76_RS17815 ATP-dependent helicase 0.33 BWI76_RS00865 DNA-binding transcriptional regulator OxyR low > 92
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS19750 ATP-dependent DNA helicase 0.34 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR low > 74
Pectobacterium carotovorum WPP14 0.36 HER17_RS11290 ATP-dependent DNA helicase 0.33 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Erwinia tracheiphila SCR3 0.36 LU632_RS13150 ATP-dependent DNA helicase 0.33 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR 0.50 26
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA 0.36 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator low > 74
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_09930 ATP-dependent DNA helicase 0.34 CSW01_13340 DNA-binding transcriptional regulator OxyR low > 62
Lysobacter sp. OAE881 0.35 ABIE51_RS05195 ATP-dependent DNA helicase 0.34 ABIE51_RS05475 LysR substrate-binding domain-containing protein low > 62
Acidovorax sp. GW101-3H11 0.34 Ac3H11_2460 DinG family ATP-dependent helicase YoaA 0.66 Ac3H11_784 Hydrogen peroxide-inducible genes activator low > 79
Variovorax sp. OAS795 0.33 ABID97_RS14180 ATP-dependent DNA helicase 0.66 ABID97_RS01570 LysR substrate-binding domain-containing protein low > 91
Variovorax sp. SCN45 0.33 GFF986 DinG family ATP-dependent helicase YoaA 0.67 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR low > 127
Shewanella loihica PV-4 0.32 Shew_2196 helicase c2 (RefSeq) 0.23 Shew_1035 LysR family transcriptional regulator (RefSeq) low > 60
Shewanella oneidensis MR-1 0.31 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.31 Shewana3_1859 helicase c2 (RefSeq) 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF4872 DinG family ATP-dependent helicase YoaA 0.64 GFF2803 Hydrogen peroxide-inducible genes activator low > 90
Shewanella amazonensis SB2B 0.15 Sama_1940 ATP-dependent helicase DinG (RefSeq) 0.22 Sama_0860 LysR family transcriptional regulator (RefSeq) low > 62
Pseudomonas fluorescens SBW25 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.47 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.47 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens GW456-L13 0.15 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.46 PfGW456L13_773 Hydrogen peroxide-inducible genes activator low > 87
Pseudomonas fluorescens FW300-N1B4 0.15 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 0.46 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator — —
Marinobacter adhaerens HP15 0.15 HP15_1856 helicase c2 0.49 HP15_308 oxidative stress regulatory protein OxyR low > 73
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.48 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator low > 103
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_05425 ATP-dependent DNA helicase DinG 0.47 AO356_12385 LysR family transcriptional regulator low > 104
Pseudomonas simiae WCS417 0.15 PS417_06510 ATP-dependent DNA helicase DinG 0.46 PS417_27865 LysR family transcriptional regulator low > 88
Pseudomonas sp. RS175 0.15 PFR28_00520 ATP-dependent DNA helicase DinG 0.47 PFR28_04434 Hydrogen peroxide-inducible genes activator low > 88
Pseudomonas fluorescens FW300-N2E3 0.15 AO353_17020 ATP-dependent DNA helicase DinG 0.46 AO353_09315 LysR family transcriptional regulator low > 101
Pseudomonas putida KT2440 0.15 PP_1125 putative Helicase 0.47 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.20 53
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_3856 Helicase c2 0.48 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_3856 Helicase c2 0.48 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas sp. S08-1 0.15 OH686_04830 ATP-dependent helicase DinG/Rad3 0.46 OH686_13510 Hydrogen peroxide-inducible genes activator low > 80
Pseudomonas stutzeri RCH2 0.14 Psest_2857 Rad3-related DNA helicases 0.47 Psest_4191 Transcriptional regulator low > 67
Mycobacterium tuberculosis H37Rv 0.11 Rv1329c Probable ATP-dependent helicase DinG 0.15 Rv0117 Oxidative stress response regulatory protein OxyS low > 58

Not shown: 3 genomes with orthologs for RR42_RS07580 only; 25 genomes with orthologs for RR42_RS17385 only