Conservation of cofitness between RR42_RS07580 and RR42_RS13270 in Cupriavidus basilensis FW507-4G11

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07580 helicase 1.0 RR42_RS13270 recombination protein RecR 0.59 7
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS01530 ATP-dependent DNA helicase 0.83 RALBFv3_RS15170 recombination protein RecR low > 76
Ralstonia solanacearum UW163 0.72 UW163_RS14840 ATP-dependent DNA helicase 0.83 UW163_RS12640 recombination protein RecR — —
Ralstonia solanacearum PSI07 0.72 RPSI07_RS15960 ATP-dependent DNA helicase 0.83 RPSI07_RS18205 recombination protein RecR — —
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS13325 ATP-dependent DNA helicase 0.86 ABZR87_RS10810 recombination mediator RecR low > 80
Ralstonia solanacearum GMI1000 0.71 RS_RS08195 ATP-dependent DNA helicase 0.83 RS_RS05980 recombination protein RecR low > 80
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.75 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS12495 helicase 0.75 BPHYT_RS09070 recombination protein RecR low > 109
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS06060 ATP-dependent DNA helicase 0.74 QEN71_RS22285 recombination mediator RecR low > 153
Paraburkholderia graminis OAS925 0.61 ABIE53_002724 ATP-dependent DNA helicase DinG 0.75 ABIE53_002048 recombination protein RecR 0.43 9
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS14855 helicase 0.73 HSERO_RS18355 recombinase RecR low > 78
Dechlorosoma suillum PS 0.52 Dsui_2149 DNA helicase, Rad3 0.71 Dsui_1811 recombination protein RecR 0.77 4
Castellaniella sp019104865 MT123 0.42 ABCV34_RS01875 ATP-dependent DNA helicase 0.60 ABCV34_RS15480 recombination mediator RecR low > 48
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_2492 Rad3-related DNA helicases 0.53 B158DRAFT_2480 DNA replication and repair protein RecR low > 40
Dickeya dadantii 3937 0.37 DDA3937_RS11240 ATP-dependent DNA helicase 0.50 DDA3937_RS05790 recombination protein RecR low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF2823 DinG family ATP-dependent helicase YoaA 0.49 GFF4390 Recombination protein RecR low > 78
Alteromonas macleodii MIT1002 0.37 MIT1002_02593 putative ATP-dependent helicase DinG 0.53 MIT1002_02649 Recombination protein RecR low > 70
Escherichia coli Nissle 1917 0.37 ECOLIN_RS10055 ATP-dependent DNA helicase 0.49 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia coli BL21 0.37 ECD_01778 putative ATP-dependent helicase, DinG family 0.49 ECD_00423 gap repair protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01925 putative ATP-dependent helicase DinG 0.49 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli ECRC101 0.37 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA 0.49 MCAODC_27380 recR recombination mediator RecR low > 87
Escherichia coli ECRC62 0.37 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA 0.49 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli ECOR27 0.37 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA 0.49 NOLOHH_01085 recR recombination mediator RecR low > 75
Escherichia coli ECRC102 0.37 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA 0.49 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli ECOR38 0.37 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA 0.49 HEPCGN_06770 recR recombination mediator RecR low > 87
Escherichia coli ECRC99 0.37 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA 0.49 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC98 0.37 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA 0.49 JDDGAC_11805 recR recombination mediator RecR low > 86
Escherichia coli ECRC100 0.37 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA 0.49 OKFHMN_08155 recR recombination mediator RecR low > 80
Dickeya dianthicola 67-19 0.37 HGI48_RS11275 ATP-dependent DNA helicase 0.50 HGI48_RS05840 recombination protein RecR — —
Rhodanobacter denitrificans MT42 0.37 LRK55_RS12465 ATP-dependent DNA helicase 0.50 LRK55_RS01020 recombination mediator RecR low > 63
Escherichia fergusonii Becca 0.37 EFB2_02192 putative ATP-dependent DNA helicase YoaA 0.49 EFB2_03586 Recombination protein RecR low > 86
Pantoea sp. MT58 0.37 IAI47_08820 ATP-dependent DNA helicase 0.49 IAI47_14465 recombination protein RecR low > 76
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS12765 ATP-dependent DNA helicase 0.50 LRK54_RS01250 recombination mediator RecR low > 59
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0750 Rad3-related DNA helicases 0.49 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Escherichia coli BW25113 0.37 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) 0.49 b0472 recR recombination protein RecR (NCBI) 0.14 76
Dickeya dianthicola ME23 0.37 DZA65_RS11620 ATP-dependent DNA helicase 0.50 DZA65_RS06165 recombination protein RecR low > 75
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_02195 dinG helicase 0.50 OKGIIK_05655 recR recombination mediator RecR low > 52
Serratia liquefaciens MT49 0.37 IAI46_14550 ATP-dependent DNA helicase 0.50 IAI46_05240 recombination protein RecR low > 86
Enterobacter sp. TBS_079 0.37 MPMX20_02714 putative ATP-dependent DNA helicase YoaA 0.49 MPMX20_01074 Recombination protein RecR low > 85
Rahnella sp. WP5 0.36 EX31_RS10615 ATP-dependent DNA helicase 0.48 EX31_RS22525 recombination protein RecR low > 89
Klebsiella michiganensis M5al 0.36 BWI76_RS17815 ATP-dependent helicase 0.50 BWI76_RS06830 recombination protein RecR low > 92
Pectobacterium carotovorum WPP14 0.36 HER17_RS11290 ATP-dependent DNA helicase 0.48 HER17_RS15695 recombination mediator RecR low > 75
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS19750 ATP-dependent DNA helicase 0.49 ABZR86_RS06235 recombination mediator RecR low > 74
Erwinia tracheiphila SCR3 0.36 LU632_RS13150 ATP-dependent DNA helicase 0.50 LU632_RS18105 recR recombination mediator RecR low > 74
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA 0.51 Xcc-8004.4012.1 Recombination protein RecR low > 74
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_09930 ATP-dependent DNA helicase 0.49 CSW01_05375 recombination protein RecR low > 62
Lysobacter sp. OAE881 0.35 ABIE51_RS05195 ATP-dependent DNA helicase 0.54 ABIE51_RS14010 recombination mediator RecR low > 62
Acidovorax sp. GW101-3H11 0.34 Ac3H11_2460 DinG family ATP-dependent helicase YoaA 0.56 Ac3H11_473 Recombination protein RecR low > 79
Variovorax sp. OAS795 0.33 ABID97_RS14180 ATP-dependent DNA helicase 0.65 ABID97_RS14700 recombination mediator RecR low > 91
Variovorax sp. SCN45 0.33 GFF986 DinG family ATP-dependent helicase YoaA 0.64 GFF1110 Recombination protein RecR low > 127
Shewanella loihica PV-4 0.32 Shew_2196 helicase c2 (RefSeq) 0.48 Shew_2233 recombination protein RecR (RefSeq) 0.36 35
Shewanella oneidensis MR-1 0.31 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) 0.46 SO2015 recR recombination protein RecR (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.31 Shewana3_1859 helicase c2 (RefSeq) 0.46 Shewana3_2444 recR recombination protein RecR (RefSeq) low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF4872 DinG family ATP-dependent helicase YoaA 0.61 GFF4253 Recombination protein RecR low > 90
Fusobacterium nucleatum SB010 0.24 HUW76_04565 ATP-dependent DNA helicase 0.43 HUW76_08785 recombination protein RecR low > 35
Shewanella amazonensis SB2B 0.15 Sama_1940 ATP-dependent helicase DinG (RefSeq) 0.48 Sama_1312 recR recombination protein RecR (RefSeq) 0.63 9
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.50 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.50 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens FW300-N1B4 0.15 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 0.50 Pf1N1B4_3864 Recombination protein RecR — —
Pseudomonas fluorescens GW456-L13 0.15 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.50 PfGW456L13_4074 Recombination protein RecR low > 87
Marinobacter adhaerens HP15 0.15 HP15_1856 helicase c2 0.49 HP15_1883 recombination protein RecR — —
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.50 Pf6N2E2_2325 Recombination protein RecR 0.49 8
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_05425 ATP-dependent DNA helicase DinG 0.50 AO356_02495 recombination protein RecR 0.65 7
Pseudomonas simiae WCS417 0.15 PS417_06510 ATP-dependent DNA helicase DinG 0.50 PS417_20800 recombination protein RecR 0.30 7
Pseudomonas sp. RS175 0.15 PFR28_00520 ATP-dependent DNA helicase DinG 0.50 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N2E3 0.15 AO353_17020 ATP-dependent DNA helicase DinG 0.50 AO353_00675 recombination protein RecR 0.49 13
Pseudomonas putida KT2440 0.15 PP_1125 putative Helicase 0.51 PP_4267 Recombination protein RecR low > 96
Pseudomonas sp. S08-1 0.15 OH686_04830 ATP-dependent helicase DinG/Rad3 0.50 OH686_02385 recombination protein RecR low > 80
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_3856 Helicase c2 0.50 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_3856 Helicase c2 0.50 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas stutzeri RCH2 0.14 Psest_2857 Rad3-related DNA helicases 0.50 Psest_2545 recombination protein RecR 0.19 33
Mycobacterium tuberculosis H37Rv 0.11 Rv1329c Probable ATP-dependent helicase DinG 0.41 Rv3715c Probable recombination protein RecR low > 58

Not shown: 2 genomes with orthologs for RR42_RS07580 only; 30 genomes with orthologs for RR42_RS13270 only