Conservation of cofitness between RR42_RS00615 and RR42_RS05860 in Cupriavidus basilensis FW507-4G11

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00615 recombinase XerC 1.0 RR42_RS05860 phospho-2-dehydro-3-deoxyheptonate aldolase 0.43 5
Ralstonia solanacearum PSI07 0.55 RPSI07_RS23690 tyrosine recombinase XerC 0.88 RPSI07_RS11845 3-deoxy-7-phosphoheptulonate synthase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS00260 Tyrosine recombinase XerC 1 0.88 RS_RS13320 3-deoxy-7-phosphoheptulonate synthase low > 80
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS05065 tyrosine recombinase XerC 0.89 ABZR87_RS01110 3-deoxy-7-phosphoheptulonate synthase AroG low > 80
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS09675 tyrosine recombinase XerC 0.88 RALBFv3_RS05460 3-deoxy-7-phosphoheptulonate synthase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS03905 tyrosine recombinase XerC 0.88 UW163_RS08165 3-deoxy-7-phosphoheptulonate synthase — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS00355 tyrosine recombinase XerC 0.85 QEN71_RS26560 3-deoxy-7-phosphoheptulonate synthase AroG — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS01655 tyrosine recombinase XerC 0.85 BPHYT_RS03535 phospho-2-dehydro-3-deoxyheptonate aldolase — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_02202 integrase/recombinase XerC 0.84 H281DRAFT_04687 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000426 integrase/recombinase XerC 0.85 ABIE53_000850 3-deoxy-7-phosphoheptulonate synthase — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS21475 recombinase XerC 0.79 HSERO_RS07160 phospho-2-dehydro-3-deoxyheptonate aldolase low > 78
Dechlorosoma suillum PS 0.40 Dsui_0651 tyrosine recombinase XerC 0.73 Dsui_3444 phospho-2-dehydro-3-deoxyheptonate aldolase low > 51
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1995 Tyrosine recombinase XerC 0.61 Ac3H11_4034 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF547 Tyrosine recombinase XerC 0.61 GFF581 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 90
Castellaniella sp019104865 MT123 0.37 ABCV34_RS13455 tyrosine recombinase XerC 0.70 ABCV34_RS06825 3-deoxy-7-phosphoheptulonate synthase AroG — —
Variovorax sp. SCN45 0.36 GFF4490 Site-specific tyrosine recombinase XerC 0.63 GFF4447 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) 0.77 45
Variovorax sp. OAS795 0.36 ABID97_RS06150 tyrosine recombinase XerC 0.63 ABID97_RS06345 3-deoxy-7-phosphoheptulonate synthase 0.58 12
Pseudomonas sp. S08-1 0.34 OH686_13785 tyrosine recombinase XerC 0.49 OH686_01760 3-deoxy-7-phosphoheptulonate synthase low > 80
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_09050 recombinase XerC 0.47 AO353_19030 phospho-2-dehydro-3-deoxyheptonate aldolase low > 101
Pseudomonas stutzeri RCH2 0.33 Psest_3767 tyrosine recombinase XerC 0.48 Psest_2331 phospho-2-dehydro-3-deoxyheptonate aldolase low > 67
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_842 Tyrosine recombinase XerC 0.47 PfGW456L13_2224 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 87
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12725 recombinase XerC 0.47 AO356_03200 phospho-2-dehydro-3-deoxyheptonate aldolase low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4416 Tyrosine recombinase XerC 0.47 Pf6N2E2_2470 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 103
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.48 Psyr_2073 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.48 Psyr_2073 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 0.29 81
Pseudomonas sp. RS175 0.32 PFR28_04378 Tyrosine recombinase XerC 0.48 PFR28_00962 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive low > 88
Pseudomonas putida KT2440 0.32 PP_5230 Tyrosine recombinase XerC 0.48 PP_2324 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase low > 96
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2171 Tyrosine recombinase XerC 0.47 Pf1N1B4_289 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) low > 87
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS15025 tyrosine recombinase XerC 0.67 ABZR86_RS00390 3-deoxy-7-phosphoheptulonate synthase low > 74
Serratia liquefaciens MT49 0.32 IAI46_00725 tyrosine recombinase XerC 0.66 IAI46_06405 3-deoxy-7-phosphoheptulonate synthase AroG low > 86
Pantoea sp. MT58 0.32 IAI47_18400 tyrosine recombinase XerC 0.65 IAI47_13605 3-deoxy-7-phosphoheptulonate synthase AroG low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF239 Tyrosine recombinase XerC 0.65 GFF8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) — —
Klebsiella michiganensis M5al 0.31 BWI76_RS01210 tyrosine recombinase XerC 0.64 BWI76_RS08600 3-deoxy-7-phosphoheptulonate synthase low > 92
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_15325 xerC tyrosine recombinase XerC 0.66 OKGIIK_09785 3-deoxy-7-phosphoheptulonate synthase — —
Rahnella sp. WP5 0.31 EX31_RS15165 tyrosine recombinase XerC 0.66 EX31_RS23545 3-deoxy-7-phosphoheptulonate synthase AroG low > 89
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.64 Xcc-8004.704.1 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS08300 tyrosine recombinase XerC 0.66 LRK55_RS02485 3-deoxy-7-phosphoheptulonate synthase low > 63
Escherichia coli ECRC102 0.31 NIAGMN_12175 xerC tyrosine recombinase XerC 0.65 NIAGMN_04790 aroG 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia coli ECRC98 0.31 JDDGAC_18045 xerC tyrosine recombinase XerC 0.65 JDDGAC_10395 aroG 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia coli ECRC99 0.31 KEDOAH_13730 xerC tyrosine recombinase XerC 0.65 KEDOAH_21225 aroG 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia coli ECRC101 0.31 MCAODC_04925 xerC tyrosine recombinase XerC 0.65 MCAODC_25960 aroG 3-deoxy-7-phosphoheptulonate synthase AroG — —
Dickeya dadantii 3937 0.31 DDA3937_RS19890 tyrosine recombinase XerC 0.65 DDA3937_RS06560 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia coli ECRC100 0.31 OKFHMN_14420 xerC tyrosine recombinase XerC 0.65 OKFHMN_06740 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_04239 Tyrosine recombinase XerC 0.65 OHPLBJKB_02959 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 73
Escherichia coli BL21 0.31 ECD_03687 site-specific tyrosine recombinase 0.65 ECD_00707 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible low > 61
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4480 tyrosine recombinase XerC 0.63 EX28DRAFT_2241 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) — —
Escherichia coli ECOR38 0.31 HEPCGN_13125 xerC tyrosine recombinase XerC 0.65 HEPCGN_01535 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 87
Escherichia coli BW25113 0.31 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.65 b0754 aroG 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) low > 76
Escherichia fergusonii Becca 0.31 EFB2_04826 Tyrosine recombinase XerC 0.66 EFB2_03352 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 86
Escherichia coli Nissle 1917 0.31 ECOLIN_RS21875 tyrosine recombinase XerC 0.66 ECOLIN_RS04015 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia coli ECOR27 0.31 NOLOHH_06550 xerC tyrosine recombinase XerC 0.65 NOLOHH_23170 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Dickeya dianthicola 67-19 0.31 HGI48_RS20045 tyrosine recombinase XerC 0.65 HGI48_RS06605 3-deoxy-7-phosphoheptulonate synthase AroG low > 71
Marinobacter adhaerens HP15 0.31 HP15_250 site-specific tyrosine recombinase XerC 0.46 HP15_1814 phospho-2-dehydro-3-heoxyheptonate aldolase 0.47 57
Shewanella loihica PV-4 0.31 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.66 Shew_0851 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) low > 60
Escherichia coli ECRC62 0.31 BNILDI_04985 xerC tyrosine recombinase XerC 0.65 BNILDI_21165 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Dickeya dianthicola ME23 0.30 DZA65_RS21090 tyrosine recombinase XerC 0.65 DZA65_RS06960 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Shewanella oneidensis MR-1 0.30 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.65 SO0756 aroG phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.30 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.65 Shewana3_3528 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.30 HER17_RS01350 tyrosine recombinase XerC 0.65 HER17_RS14805 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Shewanella amazonensis SB2B 0.30 Sama_3247 integrase/recombinase XerC (RefSeq) 0.61 Sama_0657 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) low > 62
Enterobacter sp. TBS_079 0.30 MPMX20_04465 Tyrosine recombinase XerC 0.63 MPMX20_01381 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 85
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS08535 tyrosine recombinase XerC 0.66 LRK54_RS02730 3-deoxy-7-phosphoheptulonate synthase low > 59
Erwinia tracheiphila SCR3 0.29 LU632_RS24135 xerC tyrosine recombinase XerC 0.63 LU632_RS15925 aroG 3-deoxy-7-phosphoheptulonate synthase AroG — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.48 PFLU_RS08380 3-deoxy-7-phosphoheptulonate synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.48 PFLU_RS08380 3-deoxy-7-phosphoheptulonate synthase low > 109
Pseudomonas simiae WCS417 0.29 PS417_27595 recombinase XerC 0.48 PS417_08430 phospho-2-dehydro-3-deoxyheptonate aldolase low > 88
Alteromonas macleodii MIT1002 0.28 MIT1002_00157 Tyrosine recombinase XerC 0.48 MIT1002_01314 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive 0.33 63
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.46 B158DRAFT_1384 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) low > 40
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_00650 tyrosine recombinase XerC 0.65 CSW01_19270 3-deoxy-7-phosphoheptulonate synthase low > 62
Bifidobacterium breve UCC2003 0.22 BBR_RS16655 tyrosine recombinase XerC 0.49 BBR_RS19195 3-deoxy-7-phosphoheptulonate synthase low > 34
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.62 TX73_000140 3-deoxy-7-phosphoheptulonate synthase low > 86

Not shown: 14 genomes with orthologs for RR42_RS00615 only; 4 genomes with orthologs for RR42_RS05860 only