Conservation of cofitness between QEN71_RS03085 and QEN71_RS27145 in Paraburkholderia sabiae LMG 24235

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS03085 DNA repair protein RadC 1.0 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.65 11
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_04066 DNA replication and repair protein RadC 0.87 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 103
Paraburkholderia graminis OAS925 0.74 ABIE53_003289 DNA repair protein RadC 0.88 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 113
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS15625 hypothetical protein 0.87 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS00330 DNA repair protein RadC 0.72 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Ralstonia solanacearum GMI1000 0.48 RS_RS12270 JAB domain-containing protein 0.72 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Ralstonia solanacearum PSI07 0.48 RPSI07_RS12675 JAB domain-containing protein 0.72 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 81
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS04710 JAB domain-containing protein 0.72 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Pseudomonas stutzeri RCH2 0.48 Psest_3803 DNA repair protein radc 0.58 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 67
Ralstonia solanacearum UW163 0.48 UW163_RS08960 JAB domain-containing protein 0.72 UW163_RS07655 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Pseudomonas sp. RS175 0.47 PFR28_04412 hypothetical protein 0.57 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 88
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS29445 JAB domain-containing protein 0.58 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS29445 JAB domain-containing protein 0.58 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas simiae WCS417 0.47 PS417_27770 hypothetical protein 0.58 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 88
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_09220 hypothetical protein 0.57 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 101
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_2126 DNA repair protein RadC 0.57 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF1170 DNA repair protein RadC 0.59 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) — —
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_12545 hypothetical protein 0.57 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 104
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS16995 hypothetical protein 0.72 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 128
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_4377 DNA repair protein RadC 0.57 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 103
Dechlorosoma suillum PS 0.45 Dsui_1537 DNA repair protein radc 0.67 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 51
Pseudomonas putida KT2440 0.45 PP_5284 UPF0758 protein PP_5284 0.58 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 96
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_798 DNA repair protein RadC 0.57 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 87
Variovorax sp. OAS795 0.44 ABID97_RS07700 DNA repair protein RadC 0.61 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 91
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS05945 hypothetical protein 0.71 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 78
Variovorax sp. SCN45 0.44 GFF5700 UPF0758 family protein 0.63 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) low > 127
Pseudomonas sp. S08-1 0.43 OH686_13620 UPF0758 family protein 0.58 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0222 DNA replication and repair protein RadC 0.57 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0222 DNA replication and repair protein RadC 0.57 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Marinobacter adhaerens HP15 0.42 HP15_3321 DNA repair protein RadC-like protein 0.52 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 73
Dickeya dianthicola 67-19 0.42 HGI48_RS00700 DNA repair protein RadC 0.57 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 71
Dickeya dianthicola ME23 0.42 DZA65_RS00755 JAB domain-containing protein 0.57 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS09165 DNA repair protein RadC 0.50 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 59
Dickeya dadantii 3937 0.42 DDA3937_RS20515 DNA repair protein RadC 0.58 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Rhodanobacter denitrificans MT42 0.42 LRK55_RS08695 DNA repair protein RadC 0.50 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 63
Shewanella amazonensis SB2B 0.42 Sama_0327 radC DNA repair protein RadC (RefSeq) 0.57 Sama_0769 UDP-N-acetylmuramate (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS15615 DNA repair protein RadC 0.50 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_15660 radC DNA repair protein RadC 0.50 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase low > 52
Pantoea sp. MT58 0.41 IAI47_00620 DNA repair protein RadC 0.57 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_01155 DNA repair protein RadC 0.58 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 62
Rahnella sp. WP5 0.41 EX31_RS14470 JAB domain-containing protein 0.54 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 89
Shewanella loihica PV-4 0.40 Shew_3481 DNA repair protein RadC (RefSeq) 0.56 Shew_3144 UDP-N-acetylmuramate (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0781 DNA repair protein radc 0.51 B158DRAFT_2035 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 40
Pectobacterium carotovorum WPP14 0.40 HER17_RS20830 DNA repair protein RadC 0.57 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1774 DNA repair protein RadC 0.55 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 79
Serratia liquefaciens MT49 0.39 IAI46_24825 DNA repair protein RadC 0.57 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00064 hypothetical protein 0.58 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 73
Escherichia coli ECRC98 0.39 JDDGAC_19245 radC DNA repair protein RadC 0.57 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 86
Escherichia coli ECOR38 0.39 HEPCGN_14445 radC DNA repair protein RadC 0.57 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli ECRC62 0.39 BNILDI_04015 radC DNA repair protein RadC 0.57 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli ECRC99 0.39 KEDOAH_12530 radC DNA repair protein RadC 0.57 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli BW25113 0.39 b3638 radC DNA repair protein (VIMSS) 0.57 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) low > 76
Escherichia coli ECRC100 0.39 OKFHMN_15620 radC DNA repair protein RadC 0.57 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 80
Escherichia coli Nissle 1917 0.39 ECOLIN_RS20730 DNA repair protein RadC 0.57 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 55
Escherichia fergusonii Becca 0.39 EFB2_00175 hypothetical protein 0.57 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 86
Escherichia coli ECRC102 0.39 NIAGMN_13380 radC DNA repair protein RadC 0.57 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECOR27 0.39 NOLOHH_07500 radC DNA repair protein RadC 0.57 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli ECRC101 0.39 MCAODC_06130 radC DNA repair protein RadC 0.57 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli BL21 0.39 ECD_03495 UPF0758 family protein 0.57 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF371 DNA repair protein RadC 0.57 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 78
Shewanella oneidensis MR-1 0.38 SO4248 radC DNA repair protein RadC (NCBI ptt file) 0.57 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.38 Shewana3_3770 radC DNA repair protein RadC (RefSeq) 0.57 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) low > 73
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.4897.1 DNA repair protein RadC 0.48 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) low > 74
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3888 DNA repair protein radc 0.57 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 76
Klebsiella michiganensis M5al 0.36 BWI76_RS27365 hypothetical protein 0.57 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 92
Enterobacter sp. TBS_079 0.36 MPMX20_00097 hypothetical protein 0.57 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 85
Erwinia tracheiphila SCR3 0.36 LU632_RS21995 radC DNA repair protein RadC 0.55 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Alteromonas macleodii MIT1002 0.36 MIT1002_00049 DNA repair protein RadC 0.57 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 70
Castellaniella sp019104865 MT123 0.35 ABCV34_RS00910 DNA repair protein RadC 0.61 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 48
Lysobacter sp. OAE881 0.35 ABIE51_RS00095 DNA repair protein RadC 0.44 ABIE51_RS17450 Mur ligase family protein low > 62
Acinetobacter radioresistens SK82 0.34 MPMX26_02636 hypothetical protein 0.51 MPMX26_03053 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_13835 hypothetical protein 0.15 CA264_11915 peptidoglycan synthetase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS02725 hypothetical protein 0.15 CA265_RS10785 peptidoglycan synthetase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.23 ABZR88_RS01715 DNA repair protein RadC 0.16 ABZR88_RS14425 UDP-N-acetylmuramate--L-alanine ligase low > 71

Not shown: 20 genomes with orthologs for QEN71_RS03085 only; 0 genomes with orthologs for QEN71_RS27145 only