Conservation of cofitness between Psyr_0003 and Psyr_0185 in Pseudomonas syringae pv. syringae B728a

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_0185 tyrosine recombinase XerC subunit 0.38 10
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.84 AO353_09050 recombinase XerC 0.38 51
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.81 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.81 PFLU_RS29280 tyrosine recombinase XerC 0.32 4
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.85 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.85 AO356_12725 recombinase XerC 0.38 23
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.83 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.84 QF045_RS01960 tyrosine recombinase XerC low > 93
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.85 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.80 COO64_RS01270 xerC tyrosine recombinase XerC low > 93
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.85 PFR28_04378 Tyrosine recombinase XerC 0.39 25
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.85 Pf6N2E2_4416 Tyrosine recombinase XerC 0.34 24
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.84 PfGW456L13_842 Tyrosine recombinase XerC 0.37 5
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.75 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas simiae WCS417 0.90 PS417_00015 recombinase RecF 0.81 PS417_27595 recombinase XerC low > 88
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.75 PP_5230 Tyrosine recombinase XerC 0.18 59
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.74 MPMX49_04536 Tyrosine recombinase XerC — —
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.74 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.72 IKLFDK_27050 tyrosine recombinase XerC 0.74 2
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.75 Psest_3767 tyrosine recombinase XerC 0.30 17
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.41 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.34 25
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.41 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.44 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.39 HER17_RS00015 DNA replication/repair protein RecF 0.47 HER17_RS01350 tyrosine recombinase XerC 0.59 33
Serratia liquefaciens MT49 0.39 IAI46_00015 DNA replication/repair protein RecF 0.47 IAI46_00725 tyrosine recombinase XerC low > 87
Dickeya dadantii 3937 0.38 DDA3937_RS21285 DNA replication/repair protein RecF 0.45 DDA3937_RS19890 tyrosine recombinase XerC — —
Rahnella sp. WP5 0.38 EX31_RS05975 DNA replication/repair protein RecF 0.46 EX31_RS15165 tyrosine recombinase XerC low > 89
Dickeya dianthicola 67-19 0.38 HGI48_RS00015 DNA replication/repair protein RecF 0.44 HGI48_RS20045 tyrosine recombinase XerC low > 71
Dickeya dianthicola ME23 0.38 DZA65_RS00015 DNA replication/repair protein RecF 0.44 DZA65_RS21090 tyrosine recombinase XerC low > 75
Escherichia coli BL21 0.38 ECD_03583 gap repair protein 0.46 ECD_03687 site-specific tyrosine recombinase 0.61 27
Escherichia coli ECRC101 0.38 MCAODC_05535 recF DNA replication/repair protein RecF 0.46 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF 0.46 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF 0.47 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli ECOR27 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF 0.47 NOLOHH_06550 xerC tyrosine recombinase XerC low > 76
Escherichia coli Nissle 1917 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF 0.47 ECOLIN_RS21875 tyrosine recombinase XerC 0.60 7
Escherichia coli ECRC62 0.38 BNILDI_04365 recF DNA replication/repair protein RecF 0.47 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECOR38 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF 0.47 HEPCGN_13125 xerC tyrosine recombinase XerC 0.68 21
Escherichia coli BW25113 0.38 b3700 recF recombination protein F (NCBI) 0.47 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Escherichia coli ECRC99 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF 0.46 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC100 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF 0.46 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Escherichia coli ECRC98 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF 0.46 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.38 EFB2_00003 DNA replication and repair protein RecF 0.47 EFB2_04826 Tyrosine recombinase XerC low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF 0.45 EX28DRAFT_4480 tyrosine recombinase XerC — —
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00065 DNA replication and repair protein RecF 0.41 CSW01_00650 tyrosine recombinase XerC low > 62
Klebsiella pneumoniae MKP103 0.37 KDGMDA_08670 DNA replication/repair protein RecF 0.46 KDGMDA_09700 tyrosine recombinase XerC low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF1756 DNA recombination and repair protein RecF 0.46 GFF239 Tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.37 MPMX20_00003 DNA replication and repair protein RecF 0.43 MPMX20_04465 Tyrosine recombinase XerC 0.35 15
Pantoea sp. MT58 0.37 IAI47_00015 DNA replication/repair protein RecF 0.47 IAI47_18400 tyrosine recombinase XerC 0.32 54
Klebsiella michiganensis M5al 0.37 BWI76_RS00010 DNA replication and repair protein RecF 0.46 BWI76_RS01210 tyrosine recombinase XerC 0.30 6
Marinobacter adhaerens HP15 0.36 HP15_3705 DNA replication and repair protein recF 0.47 HP15_250 site-specific tyrosine recombinase XerC 0.31 67
Erwinia amylovora T8 0.36 OLJFJH_05150 DNA replication/repair protein RecF 0.47 OLJFJH_06415 tyrosine recombinase XerC low > 58
Erwinia tracheiphila SCR3 0.36 LU632_RS00015 recF DNA replication/repair protein RecF 0.46 LU632_RS24135 xerC tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS19305 DNA replication/repair protein RecF 0.46 PagCFBP13505_RS15380 tyrosine recombinase XerC — —
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_09800 recF DNA replication/repair protein RecF 0.46 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00003 DNA replication and repair protein RecF 0.42 MIT1002_00157 Tyrosine recombinase XerC 0.40 50
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.46 B158DRAFT_0244 tyrosine recombinase XerC subunit low > 40
Acinetobacter radioresistens SK82 0.30 MPMX26_00003 DNA replication and repair protein RecF 0.37 MPMX26_02230 Tyrosine recombinase XerC — —
Acinetobacter baumannii LAC-4 0.30 RR41_RS00015 DNA replication/repair protein RecF 0.38 RR41_RS04465 tyrosine recombinase — —
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08240 DNA replication/repair protein RecF 0.45 LRK55_RS08300 tyrosine recombinase XerC low > 63
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.44 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF 0.47 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS00015 DNA replication/repair protein RecF 0.47 LRK53_RS02315 tyrosine recombinase XerC low > 59
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.48 ABZR86_RS15025 tyrosine recombinase XerC 0.58 15
Lysobacter sp. OAE881 0.25 ABIE51_RS00765 DNA replication/repair protein RecF 0.45 ABIE51_RS03035 tyrosine recombinase XerC low > 62
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.45 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Fusobacterium nucleatum SB010 0.17 HUW76_00025 DNA replication/repair protein RecF 0.14 HUW76_06795 tyrosine-type recombinase/integrase — —
Rhizobium sp. OAE497 0.16 ABIE40_RS00200 DNA replication/repair protein RecF 0.28 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Agrobacterium fabrum C58 0.16 Atu0073 recF-like protein 0.29 Atu2628 site-specific recombinase — —
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.26 MPMX19_02110 Tyrosine recombinase XerC — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.31 ABZR88_RS17800 tyrosine-type recombinase/integrase low > 71
Bosea sp. OAE506 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.29 ABIE41_RS07870 tyrosine recombinase XerC 0.52 17
Bifidobacterium breve UCC2003 0.14 BBR_RS10265 DNA replication and repair protein RecF 0.34 BBR_RS16755 site-specific tyrosine recombinase XerD low > 34
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_2727 DNA replication and repair protein RecF 0.24 Ga0059261_2764 Site-specific recombinase XerD — —
Sphingobium sp. HT1-2 0.13 GFF730 DNA recombination and repair protein RecF 0.26 GFF251 Site-specific tyrosine recombinase XerC low > 95
Azospirillum brasilense Sp245 0.13 AZOBR_RS17670 recombinase RecF 0.27 AZOBR_RS03965 tyrosine recombinase XerC — —
Magnetospirillum magneticum AMB-1 0.12 AMB_RS03285 DNA replication and repair protein RecF 0.28 AMB_RS21485 tyrosine recombinase XerC — —
Rhodopseudomonas palustris CGA009 0.12 TX73_000015 DNA replication/repair protein RecF 0.29 TX73_000945 tyrosine recombinase XerC low > 86
Xanthobacter sp. DMC5 0.12 GFF3876 DNA replication and repair protein RecF 0.28 GFF2054 Tyrosine recombinase XerC — —
Dinoroseobacter shibae DFL-12 0.11 Dshi_3375 SMC domain protein (RefSeq) 0.28 Dshi_5002 xerC hypothetical protein (NCBI) — —
Phaeobacter inhibens DSM 17395 0.11 PGA1_c00030 DNA replication and repair protein RecF 0.27 PGA1_c05760 putative tyrosine recombinase XerC 0.51 10
Caulobacter crescentus NA1000 0.11 CCNA_00158 DNA replication and repair protein recF 0.26 CCNA_00349 integrase/recombinase, XerC-CodV family 0.68 16
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_00158 DNA replication and repair protein recF 0.26 CCNA_00349 integrase/recombinase, XerC-CodV family low > 67
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.31 Rv1701 Probable integrase/recombinase low > 58
Rhodospirillum rubrum S1H 0.10 Rru_A0003 RecF protein (NCBI) 0.29 Rru_A1220 Phage integrase (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.10 A4249_RS15360 DNA replication/repair protein RecF 0.27 A4249_RS12210 tyrosine recombinase XerC low > 48

Not shown: 13 genomes with orthologs for Psyr_0003 only; 21 genomes with orthologs for Psyr_0185 only