Conservation of cofitness between Pf6N2E2_4412 and Pf6N2E2_5558 in Pseudomonas fluorescens FW300-N2E2

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_4412 Ammonium transporter 1.0 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.47 15
Pseudomonas fluorescens FW300-N2C3 1.00 AO356_12705 ammonia channel protein 0.93 AO356_18170 glycine dehydrogenase low > 104
Pseudomonas sp. RS175 0.99 PFR28_04382 Ammonia channel 0.92 PFR28_03383 Glycine dehydrogenase (decarboxylating) low > 88
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_2167 Ammonium transporter 0.89 Pf1N1B4_621 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_838 Ammonium transporter 0.90 PfGW456L13_1868 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.42 22
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS29300 ammonium transporter 0.88 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.90 PFLU_RS29300 ammonium transporter 0.88 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas simiae WCS417 0.88 PS417_27615 ammonia channel protein 0.87 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.33 43
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_09070 ammonia channel protein 0.91 AO353_03500 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.55 6
Pseudomonas sp. S08-1 0.87 OH686_13760 Ammonium transporter 0.58 OH686_11165 glycine dehydrogenase low > 80
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_0189 ammonium transporter 0.84 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_0189 ammonium transporter 0.84 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas stutzeri RCH2 0.84 Psest_3772 ammonium transporter 0.57 Psest_0183 glycine dehydrogenase (decarboxylating) low > 67
Pseudomonas putida KT2440 0.83 PP_5233 ammonium transporter AmtB 0.82 PP_0988 glycine dehydrogenase 0.22 27
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS09495 ammonium transporter 0.63 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase low > 74
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS01405 ammonium transporter 0.63 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_02012 ammonium transporter 0.65 H281DRAFT_02409 glycine dehydrogenase low > 103
Paraburkholderia graminis OAS925 0.57 ABIE53_000655 Amt family ammonium transporter 0.65 ABIE53_000238 glycine dehydrogenase low > 113
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS02550 ammonia channel protein 0.65 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) low > 109
Ralstonia solanacearum PSI07 0.53 RPSI07_RS22460 ammonia channel protein 0.61 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) low > 81
Ralstonia solanacearum GMI1000 0.53 RS_RS01690 ammonium transporter 0.61 RS_RS16510 glycine dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS10850 ammonia channel protein 0.61 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) low > 76
Ralstonia solanacearum UW163 0.53 UW163_RS02730 ammonia channel protein 0.61 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) — —
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS06700 ammonium transporter 0.61 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS01760 ammonia channel protein 0.63 RR42_RS20070 glycine dehydrogenase 0.31 17
Shewanella sp. ANA-3 0.51 Shewana3_0778 ammonium transporter (RefSeq) 0.57 Shewana3_3499 glycine dehydrogenase (RefSeq) low > 73
Variovorax sp. SCN45 0.51 GFF5119 Ammonium transporter 0.59 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 127
Dechlorosoma suillum PS 0.50 Dsui_0763 ammonium transporter 0.57 Dsui_2737 glycine dehydrogenase, decarboxylating low > 51
Rhodopseudomonas palustris CGA009 0.50 TX73_001435 ammonium transporter 0.58 TX73_019935 aminomethyl-transferring glycine dehydrogenase low > 86
Rhizobium sp. OAE497 0.49 ABIE40_RS18420 ammonium transporter 0.57 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase low > 107
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.249.1 Ammonium transporter 0.60 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 74
Erwinia tracheiphila SCR3 0.49 LU632_RS18270 amtB ammonium transporter AmtB 0.58 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase low > 74
Variovorax sp. OAS795 0.49 ABID97_RS03635 ammonium transporter 0.59 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF1922 Ammonium transporter 0.57 GFF5215 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 90
Bacteroides ovatus ATCC 8483 0.48 BACOVA_03766 ammonium transporter 0.50 BACOVA_04038 glycine dehydrogenase low > 94
Serratia liquefaciens MT49 0.48 IAI46_05085 ammonium transporter AmtB 0.58 IAI46_20850 aminomethyl-transferring glycine dehydrogenase low > 86
Acidovorax sp. GW101-3H11 0.48 Ac3H11_3401 Ammonium transporter 0.59 Ac3H11_167 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 79
Lysobacter sp. OAE881 0.48 ABIE51_RS01435 ammonium transporter 0.61 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase low > 62
Sinorhizobium meliloti 1021 0.48 SMc03807 ammonium transporter 0.58 SMc02049 glycine dehydrogenase low > 103
Pantoea sp. MT58 0.48 IAI47_14580 ammonium transporter AmtB 0.57 IAI47_03775 aminomethyl-transferring glycine dehydrogenase low > 76
Pectobacterium carotovorum WPP14 0.47 HER17_RS15785 ammonium transporter AmtB 0.59 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF4368 Ammonium transporter 0.58 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 78
Klebsiella michiganensis M5al 0.46 BWI76_RS06605 ammonium transporter 0.59 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 92
Escherichia fergusonii Becca 0.46 EFB2_03606 Ammonia channel 0.58 EFB2_00999 Glycine dehydrogenase (decarboxylating) low > 86
Agrobacterium fabrum C58 0.46 Atu2758 ammonium transporter 0.57 Atu1462 glycine cleavage system protein P2 low > 89
Escherichia coli Nissle 1917 0.46 ECOLIN_RS02700 ammonium transporter AmtB 0.58 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase low > 55
Escherichia coli BL21 0.45 ECD_00403 ammonium transporter 0.58 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex low > 61
Escherichia coli BW25113 0.45 b0451 amtB ammonium transporter (NCBI) 0.58 b2903 gcvP glycine dehydrogenase (NCBI) 0.21 17
Escherichia coli ECRC101 0.45 MCAODC_27485 amtB ammonium transporter AmtB 0.58 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli ECRC62 0.45 BNILDI_22610 amtB ammonium transporter AmtB 0.58 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_03222 Ammonia channel 0.58 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) low > 73
Escherichia coli ECRC102 0.45 NIAGMN_06315 amtB ammonium transporter AmtB 0.58 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECRC100 0.45 OKFHMN_08260 amtB ammonium transporter AmtB 0.58 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase low > 80
Enterobacter sp. TBS_079 0.45 MPMX20_01043 Ammonia channel 0.58 MPMX20_03762 Glycine dehydrogenase (decarboxylating) low > 85
Escherichia coli ECRC99 0.45 KEDOAH_19705 amtB ammonium transporter AmtB 0.58 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECOR27 0.45 NOLOHH_01195 amtB ammonium transporter AmtB 0.58 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Escherichia coli ECOR38 0.45 HEPCGN_06875 amtB ammonium transporter AmtB 0.58 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli ECRC98 0.45 JDDGAC_11915 amtB ammonium transporter AmtB 0.58 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase low > 86
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2518 ammonium transporter 0.58 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) low > 76
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_14925 Ammonium transporter 0.61 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain low > 52
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS08110 ammonium transporter 0.61 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS07860 ammonium transporter 0.62 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase low > 63
Rahnella sp. WP5 0.44 EX31_RS22320 ammonium transporter AmtB 0.57 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase low > 89
Dickeya dianthicola 67-19 0.43 HGI48_RS05745 ammonium transporter AmtB 0.57 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS06070 ammonium transporter AmtB 0.57 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase low > 75
Dickeya dadantii 3937 0.42 DDA3937_RS05700 ammonium transporter AmtB 0.57 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase low > 74
Phaeobacter inhibens DSM 17395 0.42 PGA1_c14730 ammonia channel 0.58 PGA1_78p00310 glycine dehydrogenase — —
Castellaniella sp019104865 MT123 0.37 ABCV34_RS04770 ammonium transporter 0.60 ABCV34_RS08835 aminomethyl-transferring glycine dehydrogenase low > 48
Mycobacterium tuberculosis H37Rv 0.37 Rv2920c Probable ammonium-transport integral membrane protein Amt 0.54 Rv1832 Probable glycine dehydrogenase GcvB (glycine decarboxylase) (glycine cleavage system P-protein) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS18240 ammonium transporter 0.57 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS14975 ammonia channel protein 0.55 CA265_RS25185 glycine dehydrogenase (aminomethyl-transferring) low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_09145 ammonia channel protein 0.55 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) low > 74
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_2279 amtB ammonium transporter 0.57 Synpcc7942_2047 gcvP glycine dehydrogenase low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.33 Echvi_3535 ammonium transporter 0.53 Echvi_0744 glycine dehydrogenase (decarboxylating) low > 79
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS16015 ammonium transporter 0.49 HMPREF1181_RS16815 aminomethyl-transferring glycine dehydrogenase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.22 BT0544 ammonium transporter (NCBI ptt file) 0.49 BT1147 glycine dehydrogenase [decarboxylating] (NCBI ptt file) low > 81

Not shown: 14 genomes with orthologs for Pf6N2E2_4412 only; 10 genomes with orthologs for Pf6N2E2_5558 only