| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_4412 | | Ammonium transporter | 1.0 | Pf6N2E2_3825 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.59 | 4 |
| Pseudomonas fluorescens FW300-N2C3 | 1.00 | AO356_12705 | | ammonia channel protein | 1.00 | AO356_09725 | | histidine kinase | 0.56 | 5 |
| Pseudomonas sp. RS175 | 0.99 | PFR28_04382 | | Ammonia channel | 0.99 | PFR28_04945 | | Sensory histidine kinase/phosphatase NtrB | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_2167 | | Ammonium transporter | 0.98 | Pf1N1B4_1610 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.62 | 2 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_838 | | Ammonium transporter | 0.98 | PfGW456L13_346 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.76 | 2 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS29300 | | ammonium transporter | 0.96 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS29300 | | ammonium transporter | 0.96 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | 0.72 | 1 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_27615 | | ammonia channel protein | 0.96 | PS417_01640 | | histidine kinase | 0.61 | 2 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_09070 | | ammonia channel protein | 0.97 | AO353_12150 | | histidine kinase | 0.74 | 1 |
| Pseudomonas sp. S08-1 | 0.87 | OH686_13760 | | Ammonium transporter | 0.90 | OH686_10635 | | Nitrogen regulation protein NtrB | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_0189 | | ammonium transporter | 0.96 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_0189 | | ammonium transporter | 0.96 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_3772 | | ammonium transporter | 0.82 | Psest_3931 | | Signal transduction histidine kinase, nitrogen specific | 0.21 | 13 |
| Pseudomonas putida KT2440 | 0.83 | PP_5233 | | ammonium transporter AmtB | 0.92 | PP_5047 | | two-component system sensory histidine kinase/phosphatase GlnL/GlnG | 0.69 | 1 |
| Dyella japonica UNC79MFTsu3.2 | 0.71 | ABZR86_RS09495 | | ammonium transporter | 0.29 | ABZR86_RS15510 | | ATP-binding protein | 0.50 | 11 |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS01405 | | ammonium transporter | 0.36 | QEN71_RS05670 | | nitrogen regulation protein NR(II) | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.57 | H281DRAFT_02012 | | ammonium transporter | 0.36 | H281DRAFT_00453 | | two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL | low | > 103 |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A1129 | | Ammonium transporter (NCBI) | 0.23 | Rru_A1677 | | Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) | low | > 58 |
| Paraburkholderia graminis OAS925 | 0.57 | ABIE53_000655 | | Amt family ammonium transporter | 0.36 | ABIE53_002805 | | two-component system nitrogen regulation sensor histidine kinase GlnL | 0.27 | 68 |
| Azospirillum brasilense Sp245 | 0.57 | AZOBR_RS00845 | | ammonia channel protein | 0.20 | AZOBR_RS14425 | | ATPase | 0.46 | 2 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS02550 | | ammonia channel protein | 0.35 | BPHYT_RS12940 | | signal transduction histidine kinase | 0.30 | 20 |
| Azospirillum sp. SherDot2 | 0.56 | MPMX19_02223 | | Ammonia channel | 0.21 | MPMX19_01111 | | Sensory histidine kinase/phosphatase NtrB | 0.44 | 67 |
| Magnetospirillum magneticum AMB-1 | 0.56 | AMB_RS00080 | | ammonium transporter | 0.24 | AMB_RS11945 | | PAS domain-containing sensor histidine kinase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS00425 | | ammonia channel protein | 0.40 | HSERO_RS15685 | | histidine kinase | 0.50 | 20 |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS22460 | | ammonia channel protein | 0.36 | RPSI07_RS17820 | | PAS domain-containing sensor histidine kinase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS01690 | | ammonium transporter | 0.37 | RS_RS06315 | | PAS domain-containing sensor histidine kinase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS10850 | | ammonia channel protein | 0.37 | RALBFv3_RS15535 | | PAS domain-containing sensor histidine kinase | — | — |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS02730 | | ammonia channel protein | 0.37 | UW163_RS12995 | | PAS domain-containing sensor histidine kinase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.52 | ABZR87_RS06700 | | ammonium transporter | 0.35 | ABZR87_RS11065 | | nitrogen regulation protein NR(II) | 0.53 | 3 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS01760 | | ammonia channel protein | 0.38 | RR42_RS12985 | | histidine kinase | 0.42 | 5 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_0778 | | ammonium transporter (RefSeq) | 0.40 | Shewana3_0259 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_00150 | | Ammonia channel | 0.44 | MPMX26_01293 | | Sensory histidine kinase/phosphatase NtrB | 0.64 | 3 |
| Variovorax sp. SCN45 | 0.51 | GFF5119 | | Ammonium transporter | 0.33 | GFF3067 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 127 |
| Dechlorosoma suillum PS | 0.50 | Dsui_0763 | | ammonium transporter | 0.42 | Dsui_1050 | | signal transduction histidine kinase, nitrogen specific | low | > 51 |
| Sphingomonas koreensis DSMZ 15582 | 0.50 | Ga0059261_2256 | | ammonium transporter | 0.19 | Ga0059261_0139 | | Signal transduction histidine kinase, nitrogen specific | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.50 | TX73_001435 | | ammonium transporter | 0.24 | TX73_013415 | | nitrogen regulation protein NR(II) | low | > 86 |
| Rhizobium sp. OAE497 | 0.49 | ABIE40_RS18420 | | ammonium transporter | 0.24 | ABIE40_RS09085 | | nitrogen regulation protein NR(II) | low | > 107 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.249.1 | | Ammonium transporter | 0.25 | Xcc-8004.251.1 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.49 | LU632_RS18270 | amtB | ammonium transporter AmtB | 0.43 | LU632_RS22140 | glnL | nitrogen regulation protein NR(II) | 0.67 | 4 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS03635 | | ammonium transporter | 0.34 | ABID97_RS09940 | | nitrogen regulation protein NR(II) | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF1922 | | Ammonium transporter | 0.36 | GFF5270 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 90 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_05085 | | ammonium transporter AmtB | 0.41 | IAI46_24955 | | nitrogen regulation protein NR(II) | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_3401 | | Ammonium transporter | 0.35 | Ac3H11_4431 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.39 | 6 |
| Pantoea sp. MT58 | 0.48 | IAI47_14580 | | ammonium transporter AmtB | 0.41 | IAI47_00455 | | nitrogen regulation protein NR(II) | low | > 76 |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS01435 | | ammonium transporter | 0.28 | ABIE51_RS01365 | | ATP-binding protein | — | — |
| Sinorhizobium meliloti 1021 | 0.48 | SMc03807 | | ammonium transporter | 0.23 | SMc01042 | | nitrogen regulation protein | 0.41 | 1 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS15785 | | ammonium transporter AmtB | 0.40 | HER17_RS21435 | | nitrogen regulation protein NR(II) | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF4368 | | Ammonium transporter | 0.40 | GFF2221 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 78 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS06605 | | ammonium transporter | 0.40 | BWI76_RS00390 | | two-component system sensor histidine kinase NtrB | 0.53 | 2 |
| Agrobacterium fabrum C58 | 0.46 | Atu2758 | | ammonium transporter | 0.24 | Atu1445 | | two component sensor kinase | 0.36 | 4 |
| Escherichia fergusonii Becca | 0.46 | EFB2_03606 | | Ammonia channel | 0.40 | EFB2_04747 | | Sensory histidine kinase/phosphatase NtrB | low | > 86 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS02700 | | ammonium transporter AmtB | 0.40 | ECOLIN_RS22300 | | nitrogen regulation protein NR(II) | low | > 55 |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_08260 | amtB | ammonium transporter AmtB | 0.40 | OKFHMN_14105 | glnL | nitrogen regulation protein NR(II) | low | > 80 |
| Escherichia coli ECOR38 | 0.45 | HEPCGN_06875 | amtB | ammonium transporter AmtB | 0.40 | HEPCGN_12735 | glnL | nitrogen regulation protein NR(II) | low | > 87 |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_06315 | amtB | ammonium transporter AmtB | 0.40 | NIAGMN_11860 | glnL | nitrogen regulation protein NR(II) | — | — |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_01043 | | Ammonia channel | 0.41 | MPMX20_04596 | | Sensory histidine kinase/phosphatase NtrB | 0.74 | 5 |
| Escherichia coli BL21 | 0.45 | ECD_00403 | | ammonium transporter | 0.40 | ECD_03754 | | sensory histidine kinase in two-component regulatory system with GlnG | low | > 61 |
| Escherichia coli ECRC101 | 0.45 | MCAODC_27485 | amtB | ammonium transporter AmtB | 0.40 | MCAODC_04605 | glnL | nitrogen regulation protein NR(II) | low | > 87 |
| Escherichia coli BW25113 | 0.45 | b0451 | amtB | ammonium transporter (NCBI) | 0.40 | b3869 | glnL | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | 0.33 | 5 |
| Escherichia coli ECRC62 | 0.45 | BNILDI_22610 | amtB | ammonium transporter AmtB | 0.40 | BNILDI_05295 | glnL | nitrogen regulation protein NR(II) | low | > 75 |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_11915 | amtB | ammonium transporter AmtB | 0.40 | JDDGAC_17730 | glnL | nitrogen regulation protein NR(II) | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_03222 | | Ammonia channel | 0.40 | OHPLBJKB_04183 | | Sensory histidine kinase/phosphatase NtrB | low | > 73 |
| Escherichia coli ECOR27 | 0.45 | NOLOHH_01195 | amtB | ammonium transporter AmtB | 0.40 | NOLOHH_06235 | glnL | nitrogen regulation protein NR(II) | low | > 75 |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_19705 | amtB | ammonium transporter AmtB | 0.40 | KEDOAH_14045 | glnL | nitrogen regulation protein NR(II) | — | — |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_2518 | | ammonium transporter | 0.41 | EX28DRAFT_4351 | | Signal transduction histidine kinase, nitrogen specific | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_14925 | | Ammonium transporter | 0.29 | OKGIIK_14470 | | PAS domain-containing sensor histidine kinase | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS08110 | | ammonium transporter | 0.26 | LRK54_RS07985 | | ATP-binding protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS07860 | | ammonium transporter | 0.26 | LRK55_RS07735 | | ATP-binding protein | low | > 63 |
| Rahnella sp. WP5 | 0.44 | EX31_RS22320 | | ammonium transporter AmtB | 0.41 | EX31_RS15875 | | nitrogen regulation protein NR(II) | low | > 89 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS06070 | | ammonium transporter AmtB | 0.41 | DZA65_RS22205 | | nitrogen regulation protein NR(II) | low | > 75 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS05745 | | ammonium transporter AmtB | 0.41 | HGI48_RS21230 | | nitrogen regulation protein NR(II) | low | > 71 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS05700 | | ammonium transporter AmtB | 0.41 | DDA3937_RS00130 | | nitrogen regulation protein NR(II) | low | > 74 |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c14730 | | ammonia channel | 0.20 | PGA1_c14780 | | nitrogen regulation protein NtrB | — | — |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS04770 | | ammonium transporter | 0.29 | ABCV34_RS03535 | | nitrogen regulation protein NR(II) | low | > 48 |
Not shown: 16 genomes with orthologs for Pf6N2E2_4412 only; 8 genomes with orthologs for Pf6N2E2_3825 only