| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_2578 | | Flagellar biosynthesis protein FliR | 1.0 | Pf6N2E2_2573 | | RNA polymerase sigma factor for flagellar operon | 0.67 | 7 |
| Pseudomonas fluorescens FW300-N2C3 | 0.98 | AO356_03760 | | flagellar biosynthetic protein FliR | 1.00 | AO356_03730 | | flagellar biosynthesis sigma factor | 0.94 | 7 |
| Pseudomonas sp. RS175 | 0.96 | PFR28_00847 | | Flagellar biosynthetic protein FliR | 0.99 | PFR28_00852 | | RNA polymerase sigma factor FliA | 0.89 | 13 |
| Pseudomonas fluorescens FW300-N2E3 | 0.92 | AO353_18755 | | flagellar biosynthetic protein FliR | 0.97 | AO353_18785 | | flagellar biosynthesis sigma factor | 0.83 | 5 |
| Pseudomonas fluorescens SBW25 | 0.89 | PFLU_RS21700 | | flagellar type III secretion system protein FliR | 0.96 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | 0.91 | 10 |
| Pseudomonas fluorescens SBW25-INTG | 0.89 | PFLU_RS21700 | | flagellar type III secretion system protein FliR | 0.96 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | 0.95 | 6 |
| Pseudomonas simiae WCS417 | 0.89 | PS417_19730 | | flagellar biosynthesis protein FliR | 0.95 | PS417_19695 | | flagellar biosynthesis sigma factor | 0.93 | 9 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_4337 | | Flagellar biosynthesis protein FliR | 0.96 | PfGW456L13_4331 | | RNA polymerase sigma factor for flagellar operon | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.83 | Pf1N1B4_3620 | | Flagellar biosynthesis protein FliR | 0.97 | Pf1N1B4_3626 | | RNA polymerase sigma factor for flagellar operon | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.82 | Psyr_3442 | | Flagellar biosynthesis protein FliR | 0.94 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.70 | 4 |
| Pseudomonas syringae pv. syringae B728a | 0.82 | Psyr_3442 | | Flagellar biosynthesis protein FliR | 0.94 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.83 | 2 |
| Pseudomonas putida KT2440 | 0.74 | PP_4353 | | Flagellar biosynthetic protein fliR | 0.91 | PP_4341 | | RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons | 0.88 | 8 |
| Pseudomonas stutzeri RCH2 | 0.64 | Psest_1734 | | flagellar biosynthetic protein FliR | 0.83 | Psest_1740 | | RNA polymerase sigma factor, FliA/WhiG family | 0.91 | 3 |
| Pseudomonas sp. S08-1 | 0.64 | OH686_02760 | | flagellar biosynthetic protein FliR | 0.84 | OH686_02730 | | RNA polymerase sigma factor for flagellar operon | 0.84 | 32 |
| Marinobacter adhaerens HP15 | 0.50 | HP15_2310 | | flagellar biosynthesis protein FliR | 0.58 | HP15_2302 | | flagellar biosynthesis sigma factor FliA | 0.89 | 23 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_1354 | fliR | flagellar biosynthesis protein FliR (RefSeq) | 0.52 | Shewana3_1359 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.56 | 55 |
| Shewanella oneidensis MR-1 | 0.43 | SO3216 | fliR | flagellar biosynthetic protein FliR (NCBI ptt file) | 0.52 | SO3210 | fliA | RNA polymerase sigma-27 factor (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.41 | Shew_1378 | fliR | flagellar biosynthesis protein FliR (RefSeq) | 0.52 | Shew_1383 | fliA | flagellar biosynthesis sigma factor (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.39 | Sama_2285 | fliR | flagellar biosynthesis protein FliR (RefSeq) | 0.53 | Sama_2280 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.98 | 17 |
| Vibrio cholerae E7946 ATCC 55056 | 0.37 | CSW01_10585 | | flagellar type III secretion system protein FliR | 0.51 | CSW01_10335 | | RNA polymerase sigma factor FliA | 0.84 | 55 |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_01097 | | Flagellar biosynthetic protein FliR | 0.55 | MIT1002_01103 | | Sigma-F factor | low | > 70 |
| Variovorax sp. SCN45 | 0.35 | GFF5738 | | Flagellar biosynthesis protein FliR | 0.38 | GFF5774 | | RNA polymerase sigma factor for flagellar operon | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS05705 | | flagellar biosynthetic protein FliR | 0.36 | ABCV34_RS05605 | | RNA polymerase sigma factor FliA | — | — |
| Dechlorosoma suillum PS | 0.34 | Dsui_1744 | | flagellar biosynthetic protein FliR | 0.47 | Dsui_1726 | | RNA polymerase sigma factor, FliA/WhiG family | 0.74 | 16 |
| Paraburkholderia sabiae LMG 24235 | 0.32 | QEN71_RS28855 | | flagellar biosynthetic protein FliR | 0.45 | QEN71_RS28940 | | RNA polymerase sigma factor FliA | 0.93 | 64 |
| Dyella japonica UNC79MFTsu3.2 | 0.32 | ABZR86_RS20240 | | flagellar biosynthetic protein FliR | 0.48 | ABZR86_RS20265 | | RNA polymerase sigma factor FliA | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.31 | HER17_RS08220 | | flagellar type III secretion system protein FliR | 0.41 | HER17_RS08355 | | RNA polymerase sigma factor FliA | 0.89 | 22 |
| Enterobacter sp. TBS_079 | 0.31 | MPMX20_02947 | | Flagellar biosynthetic protein FliR | 0.41 | MPMX20_02847 | | RNA polymerase sigma factor FliA | 0.92 | 7 |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS23350 | | flagellar biosynthesis protein FliR | 0.41 | RR42_RS35750 | | DNA-directed RNA polymerase sigma-70 factor | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.31 | ABIE53_000086 | | flagellar biosynthetic protein FliR | 0.45 | ABIE53_000108 | | RNA polymerase sigma factor for flagellar operon FliA | 0.98 | 11 |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS22220 | | flagellar biosynthetic protein FliR | 0.41 | ABZR87_RS18040 | | RNA polymerase sigma factor FliA | 0.95 | 17 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_0604 | | flagellar biosynthetic protein FliR | 0.41 | EX28DRAFT_0625 | | RNA polymerase sigma factor, FliA/WhiG family | 0.74 | 21 |
| Burkholderia phytofirmans PsJN | 0.30 | BPHYT_RS18835 | | flagellar biosynthesis protein FliR | 0.45 | BPHYT_RS18925 | | RNA polymerase sigma70 | 0.52 | 20 |
| Herbaspirillum seropedicae SmR1 | 0.30 | HSERO_RS10250 | | flagellar biosynthesis protein FliR | 0.45 | HSERO_RS10160 | | flagellar biosynthesis sigma factor | 0.89 | 27 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_05774 | | flagellar biosynthetic protein FliR | 0.45 | H281DRAFT_05756 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.57 | 23 |
| Rahnella sp. WP5 | 0.30 | EX31_RS09600 | | flagellar type III secretion system protein FliR | 0.41 | EX31_RS09450 | | RNA polymerase sigma factor FliA | 0.35 | 63 |
| Ralstonia solanacearum UW163 | 0.29 | UW163_RS17510 | | flagellar biosynthetic protein FliR | 0.41 | UW163_RS21665 | | RNA polymerase sigma factor FliA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.29 | RALBFv3_RS21675 | | flagellar biosynthetic protein FliR | 0.41 | RALBFv3_RS17485 | | RNA polymerase sigma factor FliA | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.29 | RPSI07_RS01450 | | flagellar biosynthetic protein FliR | 0.41 | RPSI07_RS06165 | | RNA polymerase sigma factor FliA | low | > 81 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.28 | GFF4006 | | Flagellar biosynthesis protein FliR | 0.42 | GFF1690 | | RNA polymerase sigma factor for flagellar operon | 0.81 | 23 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.2823.1 | | Flagellar biosynthesis protein FliR | 0.44 | Xcc-8004.2832.1 | | RNA polymerase sigma factor for flagellar operon | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.28 | RS_RS18950 | | flagellar biosynthetic protein FliR | 0.41 | RS_RS23830 | | RNA polymerase sigma factor FliA | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_1416 | | Flagellar biosynthesis protein FliR | 0.41 | Ac3H11_1381 | | RNA polymerase sigma factor for flagellar operon | low | > 79 |
| Rhodanobacter sp. FW510-T8 | 0.27 | OKGIIK_02805 | fliR | flagellar biosynthetic protein FliR | 0.51 | OKGIIK_02830 | fliA | RNA polymerase sigma factor FliA | low | > 52 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF1463 | | Flagellar biosynthesis protein FliR | 0.39 | GFF1428 | | RNA polymerase sigma factor for flagellar operon | — | — |
| Dickeya dianthicola 67-19 | 0.27 | HGI48_RS13470 | | flagellar type III secretion system protein FliR | 0.43 | HGI48_RS13350 | | RNA polymerase sigma factor FliA | 0.86 | 26 |
| Dickeya dianthicola ME23 | 0.27 | DZA65_RS13955 | | flagellar type III secretion system protein FliR | 0.43 | DZA65_RS13835 | | RNA polymerase sigma factor FliA | 0.99 | 16 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.27 | OHPLBJKB_01779 | | hypothetical protein | 0.42 | OHPLBJKB_01807 | | RNA polymerase sigma factor FliA | — | — |
| Dickeya dadantii 3937 | 0.27 | DDA3937_RS13425 | | flagellar type III secretion system protein FliR | 0.43 | DDA3937_RS13300 | | RNA polymerase sigma factor FliA | 0.97 | 21 |
| Escherichia coli ECRC101 | 0.27 | MCAODC_19740 | fliR | flagellar type III secretion system protein FliR | 0.42 | MCAODC_19610 | fliA | RNA polymerase sigma factor FliA | low | > 87 |
| Pantoea sp. MT58 | 0.27 | IAI47_07970 | | flagellar type III secretion system protein FliR | 0.42 | IAI47_08160 | | RNA polymerase sigma factor FliA | 0.80 | 25 |
| Escherichia coli ECRC99 | 0.27 | KEDOAH_02440 | fliR | flagellar type III secretion system protein FliR | 0.42 | KEDOAH_02310 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC100 | 0.27 | OKFHMN_25655 | fliR | flagellar type III secretion system protein FliR | 0.42 | OKFHMN_25780 | fliA | RNA polymerase sigma factor FliA | low | > 80 |
| Escherichia coli ECRC98 | 0.27 | JDDGAC_00240 | fliR | flagellar type III secretion system protein FliR | 0.42 | JDDGAC_00370 | fliA | RNA polymerase sigma factor FliA | low | > 86 |
| Escherichia coli ECRC102 | 0.27 | NIAGMN_02400 | fliR | flagellar type III secretion system protein FliR | 0.42 | NIAGMN_02270 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_16285 | fliR | flagellar type III secretion system protein FliR | 0.42 | NOLOHH_16400 | fliA | RNA polymerase sigma factor FliA | low | > 75 |
| Escherichia coli BW25113 | 0.26 | b1950 | fliR | flagellar biosynthesis protein R (NCBI) | 0.42 | b1922 | fliA | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | low | > 76 |
| Escherichia coli ECRC62 | 0.26 | BNILDI_15075 | fliR | flagellar type III secretion system protein FliR | 0.42 | BNILDI_15190 | fliA | RNA polymerase sigma factor FliA | 0.59 | 9 |
| Escherichia fergusonii Becca | 0.26 | EFB2_01996 | | Flagellar biosynthetic protein FliR | 0.42 | EFB2_02023 | | RNA polymerase sigma factor FliA | low | > 86 |
| Rhodanobacter denitrificans MT42 | 0.26 | LRK55_RS13295 | | flagellar biosynthetic protein FliR | 0.51 | LRK55_RS13320 | | RNA polymerase sigma factor FliA | 0.71 | 1 |
| Rhodanobacter denitrificans FW104-10B01 | 0.26 | LRK54_RS13555 | | flagellar biosynthetic protein FliR | 0.51 | LRK54_RS13580 | | RNA polymerase sigma factor FliA | 0.57 | 5 |
| Serratia liquefaciens MT49 | 0.25 | IAI46_15900 | | flagellar type III secretion system protein FliR | 0.41 | IAI46_15785 | | RNA polymerase sigma factor FliA | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.25 | LU632_RS10515 | fliR | flagellar type III secretion system protein FliR | 0.43 | LU632_RS13785 | | RNA polymerase sigma factor FliA | low | > 74 |
| Escherichia coli ECOR38 | 0.23 | HEPCGN_04015 | fliR | flagellar type III secretion system protein FliR | 0.42 | HEPCGN_04135 | fliA | RNA polymerase sigma factor FliA | low | > 87 |
| Sphingomonas koreensis DSMZ 15582 | 0.23 | Ga0059261_2060 | | flagellar biosynthetic protein FliR | 0.25 | Ga0059261_2081 | | RNA polymerase sigma factor, FliA/WhiG family | 0.78 | 2 |
| Lysobacter sp. OAE881 | 0.22 | ABIE51_RS16840 | | flagellar biosynthetic protein FliR | 0.49 | ABIE51_RS16865 | | RNA polymerase sigma factor FliA | 0.85 | 13 |
| Desulfovibrio vulgaris Miyazaki F | 0.19 | DvMF_2016 | | flagellar biosynthetic protein FliR (RefSeq) | 0.30 | DvMF_2011 | | RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) | 0.88 | 25 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.18 | DVU3234 | | flagellar biosynthetic protein FliR (TIGR) | 0.29 | DVU3229 | fliA | RNA polymerase sigma factor for flagellar operon FliA (TIGR) | 0.88 | 28 |
Not shown: 13 genomes with orthologs for Pf6N2E2_2578 only; 1 genomes with orthologs for Pf6N2E2_2573 only