Conservation of cofitness between PP_2215 and PP_4803 in Pseudomonas putida KT2440

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2215 acetyl-CoA acetyltransferase 1.0 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.21 16
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_25685 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) 0.88 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_2982 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (from data) 0.89 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens SBW25 0.84 PFLU_RS14765 acetyl-CoA C-acyltransferase 0.90 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS14765 acetyl-CoA C-acyltransferase 0.90 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_4786 3-ketoacyl-CoA thiolase (EC 2.3.1.16) 0.88 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas sp. RS175 0.84 PFR28_01882 Acetyl-CoA acetyltransferase 0.88 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.16 79
Pseudomonas simiae WCS417 0.84 PS417_13855 acetyl-CoA acetyltransferase 0.91 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_1145 3-ketoacyl-CoA thiolase (EC 2.3.1.16) 0.88 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_26350 acetyl-CoA acetyltransferase 0.88 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas stutzeri RCH2 0.76 Psest_2446 acetyl-CoA acetyltransferases 0.78 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Rhodopseudomonas palustris CGA009 0.75 TX73_011915 acetyl-CoA C-acetyltransferase 0.30 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_3031 Thiolase 0.89 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_3031 Thiolase 0.89 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas sp. S08-1 0.74 OH686_00870 3-ketoacyl-CoA thiolase or Acetyl-CoA acetyltransferase 0.77 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Magnetospirillum magneticum AMB-1 0.69 AMB_RS18210 acetyl-CoA C-acyltransferase 0.31 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase low > 64
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS01125 acetyl-CoA C-acetyltransferase 0.38 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein low > 153
Sinorhizobium meliloti 1021 0.67 SMa1450 thiolase 0.28 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_02089 acetyl-CoA C-acetyltransferase 0.39 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Paraburkholderia graminis OAS925 0.67 ABIE53_000590 acetyl-CoA C-acetyltransferase 0.38 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Azospirillum sp. SherDot2 0.66 MPMX19_03936 Acetyl-CoA acetyltransferase 0.38 MPMX19_05873 D-alanyl-D-alanine carboxypeptidase DacA low > 112
Rhizobium sp. OAE497 0.66 ABIE40_RS23180 acetyl-CoA C-acyltransferase 0.25 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein low > 107
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS02230 acetyl-CoA acetyltransferase 0.39 BPHYT_RS02415 cytochrome C550 low > 109
Ralstonia solanacearum PSI07 0.65 RPSI07_RS22800 acetyl-CoA C-acyltransferase 0.40 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Dechlorosoma suillum PS 0.65 Dsui_0976 acetyl-CoA acetyltransferase 0.46 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS06305 acetyl-CoA C-acetyltransferase 0.39 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS25380 acetyl-CoA acetyltransferase 0.41 RR42_RS01680 cytochrome C550 low > 128
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS10515 acetyl-CoA C-acyltransferase 0.40 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia solanacearum UW163 0.64 UW163_RS03065 acetyl-CoA C-acyltransferase 0.40 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum GMI1000 0.64 RS_RS01355 acetyl-CoA C-acyltransferase 0.40 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF1723 3-ketoacyl-CoA thiolase (EC 2.3.1.16) 0.36 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Agrobacterium fabrum C58 0.63 Atu3475 acetyl-CoA C-acetyltransferase 0.26 Atu1499 penicillin binding protein low > 89
Acidovorax sp. GW101-3H11 0.63 Ac3H11_2994 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (from data) 0.34 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Rhodospirillum rubrum S1H 0.62 Rru_A1946 Acetyl-CoA C-acetyltransferase (NCBI) 0.36 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2511 acetyl-CoA acetyltransferases 0.49 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Variovorax sp. OAS795 0.60 ABID97_RS25195 acetyl-CoA C-acyltransferase 0.37 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Variovorax sp. SCN45 0.60 GFF1993 3-ketoacyl-CoA thiolase (EC 2.3.1.16) 0.43 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 127
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS04635 acetyl-CoA acetyltransferase 0.40 HSERO_RS21530 cytochrome C550 low > 78
Azospirillum brasilense Sp245 0.59 AZOBR_RS28180 acetyl-CoA acetyltransferase 0.32 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Shewanella loihica PV-4 0.59 Shew_1667 acetyl-CoA acetyltransferase (RefSeq) 0.45 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60
Castellaniella sp019104865 MT123 0.59 ABCV34_RS12360 acetyl-CoA C-acyltransferase 0.40 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Shewanella amazonensis SB2B 0.59 Sama_1375 Acetyl-CoA C-acetyltransferase (RefSeq) 0.43 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.59 PGA1_c33180 acetyl-CoA acetyltransferase 0.27 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Marinobacter adhaerens HP15 0.58 HP15_1009 acyl-CoA thiolase 0.54 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_1483 acetyl-CoA acetyltransferases 0.29 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Acinetobacter radioresistens SK82 0.58 MPMX26_02383 Acetyl-CoA acetyltransferase 0.45 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36
Alteromonas macleodii MIT1002 0.58 MIT1002_01671 Acetyl-CoA acetyltransferase 0.44 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Shewanella sp. ANA-3 0.57 Shewana3_2771 acetyl-CoA acetyltransferases (RefSeq) 0.44 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Shewanella oneidensis MR-1 0.57 SO1677 atoB 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) (from data) 0.43 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Dinoroseobacter shibae DFL-12 0.57 Dshi_0074 acetyl-CoA acetyltransferase (RefSeq) 0.26 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_04025 paaJ acetyl-CoA C-acyltransferase 0.45 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS15265 acetyl-CoA C-acyltransferase 0.46 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Rhodanobacter denitrificans MT42 0.53 LRK55_RS14980 acetyl-CoA C-acyltransferase 0.46 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Lysobacter sp. OAE881 0.52 ABIE51_RS13145 acetyl-CoA C-acyltransferase 0.46 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS20570 acetyl-CoA C-acyltransferase 0.43 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.3647.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) 0.43 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74

Not shown: 7 genomes with orthologs for PP_2215 only; 27 genomes with orthologs for PP_4803 only