Conservation of cofitness between PP_5127 and PP_4332 in Pseudomonas putida KT2440

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5127 ribosomal RNA large subunit methyltransferase I 1.0 PP_4332 Chemotaxis protein CheW 0.17 11
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_13260 SAM-dependent methyltransferase 0.86 AO356_03685 chemotaxis protein CheW low > 104
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.86 Pf6N2E2_2564 Positive regulator of CheA protein activity (CheW) low > 103
Pseudomonas sp. RS175 0.92 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.86 PFR28_00861 Chemotaxis protein CheW low > 88
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_08330 SAM-dependent methyltransferase 0.86 AO353_18830 chemotaxis protein CheW low > 101
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.86 Pf1N1B4_3635 Positive regulator of CheA protein activity (CheW) — —
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.87 PfGW456L13_4321 Positive regulator of CheA protein activity (CheW) low > 87
Pseudomonas simiae WCS417 0.92 PS417_26880 SAM-dependent methyltransferase 0.85 PS417_19650 chemotaxis protein CheW 0.24 40
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_4764 SAM-dependent methyltransferase 0.97 Psyr_3428 CheW-like protein low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_4764 SAM-dependent methyltransferase 0.97 Psyr_3428 CheW-like protein low > 86
Pseudomonas fluorescens SBW25 0.92 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.85 PFLU_RS21615 chemotaxis protein CheW low > 109
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.85 PFLU_RS21615 chemotaxis protein CheW low > 109
Pseudomonas stutzeri RCH2 0.89 Psest_0236 Predicted SAM-dependent methyltransferases 0.92 Psest_1749 Chemotaxis signal transduction protein low > 67
Pseudomonas sp. S08-1 0.88 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.90 OH686_02685 Positive regulator of CheA protein activity (CheW) low > 80
Marinobacter adhaerens HP15 0.55 HP15_460 SAM-dependent methyltransferase 0.78 HP15_2292 purine-binding chemotaxis protein CheW low > 73
Desulfovibrio vulgaris Hildenborough JW710 0.45 DVU0495 conserved hypothetical protein (TIGR) 0.34 DVU1904 cheW-2 chemotaxis protein CheW (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.44 DvMF_1714 protein of unknown function Met10 (RefSeq) 0.37 DvMF_0792 CheW protein (RefSeq) low > 51
Azospirillum sp. SherDot2 0.38 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I 0.30 MPMX19_06746 Chemotaxis protein CheW low > 112
Phaeobacter inhibens DSM 17395 0.29 PGA1_c19990 ribosomal RNA large subunit methyltransferase I 0.29 PGA1_262p02110 putative chemotaxis protein CheW low > 62
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.74 CSW01_10300 chemotaxis protein CheW low > 62
Shewanella sp. ANA-3 0.27 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.79 Shewana3_1367 CheW protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.27 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.81 Sama_2272 purine-binding chemotaxis protein CheW (RefSeq) low > 62
Shewanella oneidensis MR-1 0.27 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.79 SO3202 cheW-3 purine-binding chemotaxis protein CheW (NCBI ptt file) low > 76
Escherichia coli ECOR38 0.27 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 HEPCGN_04545 cheW chemotaxis protein CheW low > 85
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.30 EX28DRAFT_0663 Chemotaxis signal transduction protein low > 76
Enterobacter sp. TBS_079 0.27 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.30 MPMX20_02797 Chemotaxis protein CheW low > 85
Escherichia coli ECRC99 0.27 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 KEDOAH_01980 cheW chemotaxis protein CheW — —
Escherichia coli ECRC98 0.27 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 JDDGAC_00700 cheW chemotaxis protein CheW — —
Escherichia coli BW25113 0.27 b0967 yccW predicted methyltransferase (RefSeq) 0.31 b1887 cheW purine-binding chemotaxis protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.27 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 ECOLIN_RS10775 chemotaxis protein CheW — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.31 OHPLBJKB_01841 Chemotaxis protein CheW low > 73
Escherichia coli ECRC62 0.27 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 BNILDI_15355 cheW chemotaxis protein CheW — —
Escherichia coli ECRC102 0.27 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 NIAGMN_01935 cheW chemotaxis protein CheW — —
Escherichia coli ECOR27 0.27 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 NOLOHH_16565 cheW chemotaxis protein CheW — —
Escherichia coli ECRC101 0.27 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 OKFHMN_26125 cheW chemotaxis protein CheW — —
Escherichia coli BL21 0.27 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.31 ECD_01858 purine-binding chemotaxis protein — —
Escherichia fergusonii Becca 0.27 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.31 EFB2_02056 Chemotaxis protein CheW low > 86
Escherichia coli ECRC101 0.27 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 MCAODC_19280 cheW chemotaxis protein CheW — —
Erwinia tracheiphila SCR3 0.26 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 LU632_RS13555 cheW chemotaxis protein CheW low > 74
Serratia liquefaciens MT49 0.26 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 IAI46_16035 chemotaxis protein CheW low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3258 LSU m5C1962 methyltransferase RlmI 0.31 GFF1668 Positive regulator of CheA protein activity (CheW) low > 78
Pantoea sp. MT58 0.26 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 IAI47_08305 chemotaxis protein CheW low > 76
Rahnella sp. WP5 0.26 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.31 EX31_RS11400 chemotaxis protein CheW low > 89
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.32 QEN71_RS29005 chemotaxis protein CheW 0.61 133
Burkholderia phytofirmans PsJN 0.26 BPHYT_RS01650 23S rRNA methyltransferase 0.33 BPHYT_RS18995 purine-binding chemotaxis protein low > 109
Alteromonas macleodii MIT1002 0.25 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.79 MIT1002_01110 Chemotaxis protein CheW low > 70
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.32 H281DRAFT_05743 CheW protein low > 103
Paraburkholderia graminis OAS925 0.25 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.32 ABIE53_000124 purine-binding chemotaxis protein CheW low > 113
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS01670 23S rRNA methyltransferase 0.31 RR42_RS35800 chemotaxis protein CheW low > 128
Dechlorosoma suillum PS 0.25 Dsui_0653 putative SAM-dependent methyltransferase 0.34 Dsui_3476 chemotaxis signal transduction protein — —
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase 0.30 ABZR87_RS17965 chemotaxis protein CheW low > 80
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase 0.31 RALBFv3_RS17395 chemotaxis protein CheW low > 76
Ralstonia solanacearum UW163 0.24 UW163_RS03910 class I SAM-dependent rRNA methyltransferase 0.31 UW163_RS21755 chemotaxis protein CheW — —
Ralstonia solanacearum GMI1000 0.24 RS_RS00255 class I SAM-dependent rRNA methyltransferase 0.31 RS_RS23915 chemotaxis protein CheW low > 80
Ralstonia solanacearum PSI07 0.24 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase 0.31 RPSI07_RS06250 chemotaxis protein CheW low > 81
Dyella japonica UNC79MFTsu3.2 0.22 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase 0.25 ABZR86_RS22225 chemotaxis protein CheW low > 74
Rhodanobacter denitrificans MT42 0.22 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.29 LRK55_RS13390 chemotaxis protein CheW low > 63
Rhodanobacter denitrificans FW104-10B01 0.22 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.29 LRK54_RS13650 chemotaxis protein CheW low > 59
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.32 Xcc-8004.2882.1 Positive regulator of CheA protein activity (CheW) low > 74
Methanococcus maripaludis JJ 0.21 MMJJ_RS07620 class I SAM-dependent rRNA methyltransferase 0.27 MMJJ_RS00335 chemotaxis protein CheW low > 28
Variovorax sp. SCN45 0.21 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) 0.33 GFF5724 Positive regulator of CheA protein activity (CheW) — —
Lysobacter sp. OAE881 0.21 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.30 ABIE51_RS16920 chemotaxis protein CheW low > 62
Acidovorax sp. GW101-3H11 0.21 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.30 Ac3H11_1422 Positive regulator of CheA protein activity (CheW) 0.26 30
Methanococcus maripaludis S2 0.20 MMP_RS06735 class I SAM-dependent rRNA methyltransferase 0.27 MMP_RS04800 chemotaxis protein CheW low > 25
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.29 OKGIIK_02895 Chemotaxis protein CheW low > 52

Not shown: 17 genomes with orthologs for PP_5127 only; 16 genomes with orthologs for PP_4332 only