Conservation of cofitness between PP_2032 and PP_2148 in Pseudomonas putida KT2440

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2032 putative ATPase 1.0 PP_2148 transcription-repair coupling factor 0.57 7
Pseudomonas syringae pv. syringae B728a 0.98 Psyr_1721 moxR protein, putative 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.98 Psyr_1721 moxR protein, putative 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas simiae WCS417 0.98 PS417_15085 ATPase AAA 0.87 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS17105 MoxR family ATPase 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS17105 MoxR family ATPase 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_625 MoxR-like ATPase in aerotolerance operon 0.89 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_24665 AAA family ATPase 0.89 AO356_02270 transcription-repair coupling factor 0.64 15
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_4640 MoxR-like ATPase in aerotolerance operon 0.87 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas sp. RS175 0.97 PFR28_01595 hypothetical protein 0.89 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_23735 AAA family ATPase 0.89 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_3300 MoxR-like ATPase in aerotolerance operon 0.87 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas sp. S08-1 0.95 OH686_22255 MoxR-like ATPase in aerotolerance operon 0.84 OH686_21990 transcription-repair coupling factor low > 80
Pseudomonas stutzeri RCH2 0.94 Psest_1943 MoxR-like ATPases 0.85 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Alteromonas macleodii MIT1002 0.69 MIT1002_01285 magnesium chelatase ATPase subunit D 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_1006 MoxR-like ATPases 0.54 B158DRAFT_1800 transcription-repair coupling factor low > 40
Marinobacter adhaerens HP15 0.67 HP15_2270 magnesium chelatase subunit I 0.62 HP15_2257 transcription-repair-coupling factor low > 73
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_14865 MoxR family ATPase 0.56 CSW01_09445 transcription-repair coupling factor low > 62
Shewanella sp. ANA-3 0.65 Shewana3_1459 ATPase (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO3090 MoxR domain protein (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.65 Shew_2427 ATPase (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Shewanella amazonensis SB2B 0.64 Sama_2169 MoxR domain-containing protein (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS11785 MoxR family ATPase 0.56 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter denitrificans MT42 0.63 LRK55_RS11585 MoxR family ATPase 0.55 LRK55_RS01815 transcription-repair coupling factor low > 63
Rhodanobacter denitrificans FW104-10B01 0.63 LRK54_RS11860 MoxR family ATPase 0.55 LRK54_RS02040 transcription-repair coupling factor low > 59
Rhodanobacter sp. FW510-T8 0.63 OKGIIK_12035 moxR AAA family ATPase 0.54 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Lysobacter sp. OAE881 0.63 ABIE51_RS17160 MoxR family ATPase 0.54 ABIE51_RS14320 transcription-repair coupling factor low > 62
Dinoroseobacter shibae DFL-12 0.59 Dshi_3113 ATPase associated with various cellular activities AAA_3 (RefSeq) 0.33 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.1188.1 MoxR-like ATPase in aerotolerance operon 0.53 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Variovorax sp. SCN45 0.45 GFF6082 MoxR-like ATPase in aerotolerance operon 0.49 GFF412 Transcription-repair coupling factor low > 127
Variovorax sp. OAS795 0.45 ABID97_RS22735 MoxR family ATPase 0.49 ABID97_RS17285 transcription-repair coupling factor low > 91
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1739 MoxR-like ATPase in aerotolerance operon 0.48 Ac3H11_328 Transcription-repair coupling factor low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF3384 MoxR-like ATPase in aerotolerance operon 0.49 GFF4934 Transcription-repair coupling factor low > 90
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_02917 AAA-family ATPase 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Caulobacter crescentus NA1000 0.40 CCNA_02917 AAA-family ATPase 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 66
Rhodospirillum rubrum S1H 0.39 Rru_A0369 ATPase associated with various cellular activities, AAA_3 (NCBI) 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) low > 58
Bifidobacterium breve UCC2003 0.39 BBR_RS17490 MoxR family ATPase 0.27 BBR_RS14115 transcription-repair coupling factor low > 34
Dechlorosoma suillum PS 0.38 Dsui_0999 MoxR-like ATPase 0.48 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Bosea sp. OAE506 0.37 ABIE41_RS11145 MoxR family ATPase 0.33 ABIE41_RS15825 transcription-repair coupling factor low > 77
Rhodopseudomonas palustris CGA009 0.36 TX73_006080 MoxR family ATPase 0.33 TX73_013805 transcription-repair coupling factor low > 86
Rhizobium sp. OAE497 0.36 ABIE40_RS13255 MoxR family ATPase 0.32 ABIE40_RS09310 transcription-repair coupling factor — —
Agrobacterium fabrum C58 0.35 Atu2253 MoxR family protein 0.33 Atu1778 transcription-repair coupling factor — —
Magnetospirillum magneticum AMB-1 0.35 AMB_RS21060 MoxR family ATPase 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_3934 MoxR-like ATPases 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Sinorhizobium meliloti 1021 0.34 SMc02703 hypothetical protein 0.32 SMc04450 transcription-repair coupling factor — —
Azospirillum sp. SherDot2 0.34 MPMX19_01142 hypothetical protein 0.33 MPMX19_00876 Transcription-repair-coupling factor 0.56 80
Ralstonia solanacearum GMI1000 0.32 RS_RS17675 MoxR family ATPase 0.49 RS_RS08275 transcription-repair coupling factor low > 80
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS16695 MoxR family ATPase 0.50 ABZR87_RS13240 transcription-repair coupling factor low > 80
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS36135 ATPase AAA 0.48 RR42_RS07845 transcription-repair coupling factor low > 128
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS22875 MoxR family ATPase 0.49 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.32 UW163_RS23495 MoxR family ATPase 0.49 UW163_RS14755 transcription-repair coupling factor — —
Ralstonia solanacearum PSI07 0.32 RPSI07_RS00345 MoxR family ATPase 0.48 RPSI07_RS16040 transcription-repair coupling factor low > 81
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_1879 moxR MoxR protein-like 0.28 Synpcc7942_1326 mfd transcription-repair coupling factor low > 38
Acinetobacter radioresistens SK82 0.29 MPMX26_01070 hypothetical protein 0.52 MPMX26_01319 Transcription-repair-coupling factor — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c31820 putative ATPase 0.33 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS14355 MoxR family ATPase 0.49 QEN71_RS22060 transcription-repair coupling factor low > 153
Paraburkholderia graminis OAS925 0.21 ABIE53_005523 MoxR-like ATPase 0.50 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_01291 MoxR-like ATPase 0.49 H281DRAFT_00880 transcription-repair coupling factor low > 103

Not shown: 12 genomes with orthologs for PP_2032 only; 30 genomes with orthologs for PP_2148 only