| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0959 | | phospholipid ABC transporter | 1.0 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | 0.39 | 9 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.75 | Psyr_4007 | | Secretion protein HlyD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.75 | Psyr_4007 | | Secretion protein HlyD | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_3259 | | Uncharacterized ABC transporter, permease component YrbE | 0.78 | Pf6N2E2_2823 | | Multidrug efflux RND membrane fusion protein MexC | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_07000 | | ABC transporter permease | 0.77 | AO356_04875 | | antibiotic transporter | 0.30 | 29 |
| Pseudomonas sp. RS175 | 0.89 | PFR28_00180 | | Intermembrane phospholipid transport system permease protein MlaE | 0.78 | PFR28_00632 | | putative efflux pump periplasmic linker TtgA | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.88 | Psest_3306 | | conserved hypothetical integral membrane protein | 0.65 | Psest_0309 | | RND family efflux transporter, MFP subunit | 0.26 | 36 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_08505 | | Phospholipid ABC transporter permease protein MlaE | 0.70 | OH686_16045 | | Multidrug efflux system, membrane fusion component | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_5007 | | Uncharacterized ABC transporter, permease component YrbE | 0.73 | PfGW456L13_4580 | | Multidrug efflux RND membrane fusion protein MexC | — | — |
| Pseudomonas simiae WCS417 | 0.85 | PS417_04380 | | ABC transporter permease | 0.77 | PS417_06775 | | antibiotic transporter | 0.26 | 14 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.78 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.78 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | 74 |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_05145 | | ABC transporter permease | 0.75 | AO353_17300 | | antibiotic transporter | 0.44 | 28 |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_1073 | | Uncharacterized ABC transporter, permease component YrbE | 0.77 | Pf1N1B4_3247 | | Multidrug efflux RND membrane fusion protein MexC | — | — |
| Marinobacter adhaerens HP15 | 0.72 | HP15_2435 | | ABC-type transport system involved in resistance to organic solvents, permease component | 0.20 | HP15_932 | | efflux transporter, RND family, MFP subunit | low | > 73 |
| Pantoea sp. MT58 | 0.64 | IAI47_17140 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.49 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.37 | 11 |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS01570 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.51 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_22425 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.48 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.63 | HER17_RS20020 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.48 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | low | > 75 |
| Dickeya dianthicola ME23 | 0.63 | DZA65_RS01550 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.51 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | 0.55 | 51 |
| Dickeya dianthicola 67-19 | 0.63 | HGI48_RS01485 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.51 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | low | > 71 |
| Rahnella sp. WP5 | 0.63 | EX31_RS12440 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.49 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS21240 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.49 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF2938 | | Uncharacterized ABC transporter, permease component YrbE | 0.48 | GFF4380 | | Membrane fusion protein of RND family multidrug efflux pump | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.61 | MIT1002_00835 | | putative phospholipid ABC transporter permease protein MlaE | 0.35 | MIT1002_00134 | | Acriflavine resistance protein A precursor | low | > 70 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_09780 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 57 |
| Escherichia coli ECRC101 | 0.61 | MCAODC_08500 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_16855 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_00506 | | putative phospholipid ABC transporter permease protein MlaE | 0.50 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | 0.42 | 35 |
| Escherichia coli BL21 | 0.61 | ECD_03059 | | ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein | 0.50 | ECD_00414 | | multidrug efflux system | low | > 60 |
| Escherichia coli ECRC62 | 0.61 | BNILDI_01755 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_15740 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC101 | 0.61 | OKFHMN_17980 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_10170 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli BW25113 | 0.61 | b3194 | yrbE | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | 0.50 | b0463 | acrA | multidrug efflux system (NCBI) | 0.35 | 28 |
| Escherichia fergusonii Becca | 0.61 | EFB2_00629 | | Intermembrane phospholipid transport system permease protein MlaE | 0.50 | EFB2_03595 | | Multidrug efflux pump subunit AcrA | low | > 86 |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS18385 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_21605 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | — | — |
| Klebsiella michiganensis M5al | 0.61 | BWI76_RS25225 | | ABC transporter permease | 0.50 | BWI76_RS06780 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.45 | 21 |
| Shewanella amazonensis SB2B | 0.61 | Sama_3080 | | hypothetical protein (RefSeq) | 0.44 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | low | > 62 |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_04100 | | Intermembrane phospholipid transport system permease protein MlaE | 0.49 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | low | > 85 |
| Shewanella loihica PV-4 | 0.60 | Shew_3303 | | hypothetical protein (RefSeq) | 0.42 | Shew_0031 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 60 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_3248 | | ABC transport permease subunit | 0.48 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Shewanella oneidensis MR-1 | 0.60 | SO3953 | | conserved hypothetical protein TIGR00056 (NCBI ptt file) | 0.43 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_0679 | | hypothetical protein (RefSeq) | 0.43 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.59 | MPMX26_02740 | | Intermembrane phospholipid transport system permease protein MlaE | 0.39 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | low | > 36 |
| Paraburkholderia graminis OAS925 | 0.53 | ABIE53_003711 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.46 | ABIE53_003409 | | membrane fusion protein (multidrug efflux system) | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_05642 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.46 | H281DRAFT_04171 | | membrane fusion protein, multidrug efflux system | 0.43 | 36 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS18965 | | ABC transporter permease | 0.47 | RR42_RS32415 | | hemolysin D | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS27915 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.49 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS02550 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.40 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS06720 | | ABC transporter permease | 0.46 | UW163_RS19385 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS06895 | | ABC transporter permease | 0.46 | RALBFv3_RS19790 | | efflux RND transporter periplasmic adaptor subunit | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS14840 | | ABC transporter permease | 0.46 | RS_RS21035 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS10340 | | ABC transporter permease | 0.45 | RPSI07_RS03395 | | efflux RND transporter periplasmic adaptor subunit | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS17760 | | ABC transporter permease | 0.48 | BPHYT_RS16175 | | hemolysin D | low | > 109 |
| Variovorax sp. SCN45 | 0.49 | GFF5335 | | Phospholipid ABC transporter permease protein MlaE | 0.42 | GFF2442 | | RND efflux system, membrane fusion protein | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS11880 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.46 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF1324 | | Uncharacterized ABC transporter, permease component YrbE | 0.40 | GFF3839 | | RND efflux system, membrane fusion protein CmeA | low | > 90 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.5365.1 | | Uncharacterized ABC transporter, permease component YrbE | 0.47 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | low | > 74 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS01010 | | MlaE family lipid ABC transporter permease subunit | 0.30 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | low | > 62 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU1246 | | membrane protein, putative (TIGR) | 0.47 | DVU2817 | acrA | multidrug resistance protein (TIGR) | low | > 55 |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS08345 | | ABC transporter permease | 0.45 | AZOBR_RS30180 | | hemolysin D | low | > 97 |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.38 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | low | > 67 |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.38 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | low | > 66 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_06141 | | Intermembrane phospholipid transport system permease protein MlaE | 0.47 | MPMX19_05883 | | Multidrug resistance protein MexA | low | > 112 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A0408 | | Protein of unknown function DUF140 (NCBI) | 0.43 | Rru_A2050 | | Secretion protein HlyD (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_2379 | | protein of unknown function DUF140 (RefSeq) | 0.08 | Dshi_1163 | | efflux transporter, RND family, MFP subunit (RefSeq) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.21 | CA264_04390 | | ABC transporter permease | 0.21 | CA264_03650 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | low | > 74 |
| Parabacteroides merdae CL09T00C40 | 0.20 | HMPREF1078_RS17075 | | ABC transporter permease | 0.20 | HMPREF1078_RS13655 | | efflux RND transporter periplasmic adaptor subunit | low | > 61 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.20 | CA265_RS16015 | | ABC transporter permease | 0.22 | CA265_RS23015 | | efflux transporter periplasmic adaptor subunit | low | > 88 |
| Phocaeicola dorei CL03T12C01 | 0.17 | ABI39_RS02350 | | ABC transporter permease | 0.20 | ABI39_RS01290 | | efflux RND transporter periplasmic adaptor subunit | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.17 | HMPREF1058_RS03105 | | ABC transporter permease | 0.21 | HMPREF1058_RS02105 | | efflux RND transporter periplasmic adaptor subunit | low | > 67 |
Not shown: 16 genomes with orthologs for PP_0959 only; 4 genomes with orthologs for PP_1386 only