Conservation of cofitness between PP_4066 and PP_0123 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4066 methylglutaconyl-CoA hydratase 1.0 PP_0123 DNA polymerase I, 5 0.25 16
Pseudomonas simiae WCS417 0.80 PS417_17025 gamma-carboxygeranoyl-CoA hydratase 0.79 PS417_00405 DNA polymerase I — —
Pseudomonas fluorescens SBW25 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_2589 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_3985 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens FW300-N2E3 0.79 AO353_20340 gamma-carboxygeranoyl-CoA hydratase 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_01590 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas sp. S08-1 0.76 OH686_00845 Methylglutaconyl-CoA hydratase 0.77 OH686_12215 DNA polymerase I low > 80
Pseudomonas sp. RS175 0.76 PFR28_01258 1,4-dihydroxy-2-naphthoyl-CoA synthase 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas stutzeri RCH2 0.69 Psest_1082 Enoyl-CoA hydratase/carnithine racemase 0.77 Psest_4219 DNA polymerase I low > 67
Alteromonas macleodii MIT1002 0.46 MIT1002_01667 putative enoyl-CoA hydratase echA8 0.62 MIT1002_00014 DNA polymerase I low > 70
Shewanella loihica PV-4 0.44 Shew_2572 enoyl-CoA hydratase/isomerase (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Shewanella amazonensis SB2B 0.43 Sama_1360 enoyl-CoA hydratase/isomerase (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Azospirillum sp. SherDot2 0.43 MPMX19_03939 Enoyl-CoA-hydratase 0.38 MPMX19_04869 DNA polymerase I low > 112
Shewanella oneidensis MR-1 0.43 SO1895 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS15435 enoyl-CoA hydratase 0.53 HSERO_RS02260 DNA polymerase I low > 78
Shewanella sp. ANA-3 0.42 Shewana3_1670 methylglutaconyl-CoA hydratase (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.41 AMB_RS03470 enoyl-CoA hydratase 0.39 AMB_RS21305 DNA polymerase I — —
Acinetobacter radioresistens SK82 0.40 MPMX26_00630 2,3-dehydroadipyl-CoA hydratase 0.48 MPMX26_00574 DNA polymerase I low > 36
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2508 Enoyl-CoA hydratase/carnithine racemase 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS10470 enoyl-CoA hydratase 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum PSI07 0.40 RPSI07_RS22845 enoyl-CoA hydratase 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Azospirillum brasilense Sp245 0.40 AZOBR_RS22290 enoyl-CoA hydratase 0.39 AZOBR_RS30685 DNA polymerase — —
Dechlorosoma suillum PS 0.40 Dsui_0981 enoyl-CoA hydratase/carnithine racemase 0.52 Dsui_0459 DNA polymerase I low > 51
Ralstonia solanacearum UW163 0.40 UW163_RS03110 enoyl-CoA hydratase 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum GMI1000 0.39 RS_RS01310 enoyl-CoA hydratase 0.51 RS_RS11195 DNA polymerase I low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1713 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Marinobacter adhaerens HP15 0.38 HP15_4180 enoyl-CoA hydratase/isomerase 0.56 HP15_293 DNA polymerase I low > 73
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS06270 enoyl-CoA hydratase/isomerase family protein 0.52 ABZR87_RS15680 DNA polymerase I 0.42 66
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS26900 enoyl-CoA hydratase 0.52 RR42_RS15050 DNA polymerase I low > 128
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS12860 enoyl-CoA hydratase/isomerase family protein 0.52 QEN71_RS17885 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.38 Rru_A1942 Enoyl-CoA hydratase/isomerase (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS23270 enoyl-CoA hydratase 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia graminis OAS925 0.37 ABIE53_005467 methylglutaconyl-CoA hydratase 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Variovorax sp. OAS795 0.37 ABID97_RS25125 enoyl-CoA hydratase/isomerase family protein 0.48 ABID97_RS09180 DNA polymerase I low > 91
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_01344 methylglutaconyl-CoA hydratase 0.50 H281DRAFT_06022 DNA polymerase I — —
Lysobacter sp. OAE881 0.36 ABIE51_RS13190 enoyl-CoA hydratase-related protein 0.52 ABIE51_RS02010 DNA polymerase I — —
Variovorax sp. SCN45 0.36 GFF2010 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS20610 enoyl-CoA hydratase-related protein 0.55 ABZR86_RS17015 DNA polymerase I — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS02030 enoyl-CoA hydratase-related protein 0.56 LRK55_RS06585 DNA polymerase I — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3014 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS02275 enoyl-CoA hydratase-related protein 0.56 LRK54_RS06840 DNA polymerase I low > 59
Phaeobacter inhibens DSM 17395 0.34 PGA1_c10360 putative enoyl-CoA hydratase 0.39 PGA1_c31780 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_02251 methylglutaconyl-CoA hydratase 0.40 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.34 CCNA_02251 methylglutaconyl-CoA hydratase 0.40 CCNA_03577 DNA polymerase I — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS03800 enoyl-CoA hydratase-related protein 0.39 A4249_RS13840 DNA polymerase I — —
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_09325 Enoyl-CoA hydratase 0.56 OKGIIK_16785 polA DNA polymerase I — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1304 Enoyl-CoA hydratase/isomerase (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Rhizobium sp. OAE497 0.31 ABIE40_RS20765 crotonase/enoyl-CoA hydratase family protein 0.31 ABIE40_RS00490 DNA polymerase I 0.29 23
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2922.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_10930 methylglutaconyl-CoA hydratase 0.35 CA264_16535 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0343 Enoyl-CoA hydratase/carnithine racemase 0.36 Echvi_1032 DNA polymerase I low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS09125 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.36 CA265_RS19630 DNA polymerase I low > 88
Rhodopseudomonas palustris CGA009 0.24 TX73_011065 enoyl-CoA hydratase/isomerase family protein 0.36 TX73_024545 DNA polymerase I low > 86
Agrobacterium fabrum C58 0.22 Atu3481 enoyl-CoA hydratase 0.41 Atu0110 DNA polymerase I — —
Mycobacterium tuberculosis H37Rv 0.20 Rv0971c Probable enoyl-CoA hydratase EchA7 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase) 0.26 Rv1629 Probable DNA polymerase I PolA — —

Not shown: 1 genomes with orthologs for PP_4066 only; 38 genomes with orthologs for PP_0123 only