| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS29215 | | response regulator transcription factor | 1.0 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.90 | 16 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS29215 | | response regulator transcription factor | 1.00 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.31 | 47 |
| Pseudomonas simiae WCS417 | 0.99 | PS417_27535 | | chemotaxis protein CheY | 0.99 | PS417_16510 | | Clp protease ClpX | 0.28 | 70 |
| Pseudomonas fluorescens FW300-N2E3 | 0.89 | AO353_08995 | | chemotaxis protein CheY | 0.96 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_2184 | | Autolysis response regulater LytR | 0.96 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_855 | | Autolysis response regulater LytR | 0.96 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.36 | 25 |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_4430 | | Autolysis response regulater LytR | 0.96 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.86 | AO356_12785 | | chemotaxis protein CheY | 0.96 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 104 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_04366 | | Sensory transduction protein LytR | 0.97 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_0063 | | Two-component response regulator AlgR | 0.96 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_0063 | | Two-component response regulator AlgR | 0.96 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.50 | 43 |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_3749 | | Response regulator of the LytR/AlgR family | 0.91 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 67 |
| Pseudomonas putida KT2440 | 0.80 | PP_0185 | | Positive alginate biosynthesis regulatory protein | 0.93 | PP_4008 | | ATP-dependent serine protease | low | > 96 |
| Pseudomonas sp. S08-1 | 0.77 | OH686_13895 | | Alginate biosynthesis two-component system response regulator AlgR | 0.92 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00187 | | Transcriptional regulatory protein YpdB | 0.64 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 36 |
| Marinobacter adhaerens HP15 | 0.39 | HP15_241 | | alginate biosynthesis regulatory protein AlgR-like protein | 0.78 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS02955 | | LytTR family DNA-binding domain-containing protein | 0.66 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.33 | Xcc-8004.830.1 | | Autolysis response regulater LytR | 0.65 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Dechlorosoma suillum PS | 0.30 | Dsui_0109 | | response regulator of the LytR/AlgR family | 0.66 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 51 |
| Rhodanobacter sp. FW510-T8 | 0.30 | OKGIIK_14425 | lytT | DNA-binding response regulator | 0.67 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS07675 | | LytTR family DNA-binding domain-containing protein | 0.67 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.26 | LRK54_RS07945 | | LytTR family DNA-binding domain-containing protein | 0.67 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 59 |
| Kangiella aquimarina DSM 16071 | 0.26 | B158DRAFT_0251 | | two component transcriptional regulator, LytTR family | 0.69 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 40 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.26 | GFF738 | | Autolysis response regulater LytR | 0.64 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.26 | Ac3H11_1634 | | Response regulator receiver:LytTr DNA-binding region | 0.64 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 79 |
| Variovorax sp. OAS795 | 0.25 | ABID97_RS08200 | | LytTR family DNA-binding domain-containing protein | 0.64 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS14825 | | LytTR family DNA-binding domain-containing protein | 0.68 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.22 | CSW01_18385 | | DNA-binding response regulator | 0.67 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Ralstonia solanacearum PSI07 | 0.22 | RPSI07_RS17365 | | DNA-binding response regulator | 0.64 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 81 |
| Ralstonia solanacearum UW163 | 0.22 | UW163_RS13450 | | DNA-binding response regulator | 0.64 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Variovorax sp. SCN45 | 0.22 | GFF3826 | | Response regulator receiver:LytTr DNA-binding region | 0.64 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Ralstonia solanacearum IBSBF1503 | 0.22 | RALBFv3_RS00120 | | DNA-binding response regulator | 0.64 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.21 | ABZR87_RS11570 | | LytTR family DNA-binding domain-containing protein | 0.65 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.21 | RS_RS06780 | | DNA-binding response regulator | 0.65 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.21 | Ga0059261_0044 | | two component transcriptional regulator, LytTR family | 0.60 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 68 |
| Herbaspirillum seropedicae SmR1 | 0.20 | HSERO_RS18060 | | LytR family transcriptional regulator | 0.64 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS12225 | | LytR family transcriptional regulator | 0.64 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Shewanella sp. ANA-3 | 0.19 | Shewana3_2594 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.70 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.19 | MIT1002_01189 | | Transcriptional regulatory protein YehT | 0.67 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 70 |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS16365 | | two-component system response regulator BtsR | 0.67 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.18 | LU632_RS20440 | btsR | two-component system response regulator BtsR | 0.65 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Shewanella oneidensis MR-1 | 0.18 | SO2823 | | response regulator (NCBI ptt file) | 0.69 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | low | > 76 |
| Dickeya dianthicola 67-19 | 0.18 | HGI48_RS16465 | | two-component system response regulator BtsR | 0.67 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 71 |
| Dickeya dianthicola ME23 | 0.18 | DZA65_RS17550 | | two-component system response regulator BtsR | 0.67 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Serratia liquefaciens MT49 | 0.17 | IAI46_23615 | | two-component system response regulator BtsR | 0.66 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Enterobacter sp. TBS_079 | 0.17 | MPMX20_03092 | | Transcriptional regulatory protein BtsR | 0.67 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Rahnella sp. WP5 | 0.17 | EX31_RS00780 | | two-component system response regulator BtsR | 0.66 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 89 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.17 | DVU0596 | lytR | DNA-binding response regulator LytR (TIGR) | 0.52 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | low | > 55 |
| Escherichia coli BL21 | 0.16 | ECD_02054 | | putative response regulator in two-component system withYehU | 0.67 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 61 |
| Escherichia coli ECRC100 | 0.16 | OKFHMN_23915 | btsR | two-component system response regulator BtsR | 0.67 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Enterobacter asburiae PDN3 | 0.16 | EX28DRAFT_0437 | | two component transcriptional regulator, LytTR family | 0.67 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 76 |
| Escherichia coli ECRC102 | 0.16 | NIAGMN_21850 | btsR | two-component system response regulator BtsR | 0.67 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli BW25113 | 0.16 | b2125 | yehT | orf, hypothetical protein (VIMSS) | 0.67 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.16 | EFB2_01731 | | Transcriptional regulatory protein BtsR | 0.67 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECRC98 | 0.16 | JDDGAC_28005 | btsR | two-component system response regulator BtsR | 0.67 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECRC99 | 0.16 | KEDOAH_04250 | btsR | two-component system response regulator BtsR | 0.67 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.16 | OHPLBJKB_01586 | | Transcriptional regulatory protein BtsR | 0.67 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Escherichia coli Nissle 1917 | 0.16 | ECOLIN_RS12450 | | two-component system response regulator BtsR | 0.67 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 55 |
| Escherichia coli ECRC101 | 0.16 | MCAODC_21245 | btsR | two-component system response regulator BtsR | 0.67 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli ECOR27 | 0.16 | NOLOHH_15235 | btsR | two-component system response regulator BtsR | 0.67 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.54 | 39 |
| Pectobacterium carotovorum WPP14 | 0.16 | HER17_RS05370 | | two-component system response regulator BtsR | 0.67 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECOR38 | 0.16 | HEPCGN_02640 | btsR | two-component system response regulator BtsR | 0.67 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli ECRC62 | 0.16 | BNILDI_14185 | btsR | two-component system response regulator BtsR | 0.67 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.16 | GFF3820 | | Two-component response-regulatory protein YehT | 0.67 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Klebsiella michiganensis M5al | 0.16 | BWI76_RS19470 | | DNA-binding response regulator | 0.67 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 92 |
| Shewanella amazonensis SB2B | 0.15 | Sama_1281 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.70 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | low | > 62 |
| Azospirillum sp. SherDot2 | 0.15 | MPMX19_06239 | | Transcriptional regulatory protein BtsR | 0.62 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 112 |
| Rhodospirillum rubrum S1H | 0.15 | Rru_A0376 | | Transcriptional Regulator, LytR/AlgR family (NCBI) | 0.63 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | low | > 58 |
| Pantoea sp. MT58 | 0.15 | IAI47_05560 | | response regulator transcription factor | 0.67 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 76 |
| Azospirillum brasilense Sp245 | 0.15 | AZOBR_RS22560 | | transcriptional regulator | 0.61 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Shewanella loihica PV-4 | 0.14 | Shew_2329 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.69 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 60 |
| Phocaeicola vulgatus CL09T03C04 | 0.14 | HMPREF1058_RS18080 | | response regulator transcription factor | 0.40 | HMPREF1058_RS09040 | | AAA family ATPase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.14 | ABI39_RS14405 | | response regulator transcription factor | 0.40 | ABI39_RS03345 | | AAA family ATPase | low | > 72 |
Not shown: 9 genomes with orthologs for PFLU_RS29215 only; 16 genomes with orthologs for PFLU_RS18550 only