Conservation of cofitness between IAI46_05085 and IAI46_14135 in Serratia liquefaciens MT49

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_05085 ammonium transporter AmtB 1.0 IAI46_14135 DNA starvation/stationary phase protection protein 0.58 3
Dickeya dianthicola ME23 0.77 DZA65_RS06070 ammonium transporter AmtB 0.73 DZA65_RS07220 DNA starvation/stationary phase protection protein low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS05745 ammonium transporter AmtB 0.73 HGI48_RS06880 DNA starvation/stationary phase protection protein low > 71
Dickeya dadantii 3937 0.74 DDA3937_RS05700 ammonium transporter AmtB 0.73 DDA3937_RS06890 DNA starvation/stationary phase protection protein low > 74
Ralstonia solanacearum PSI07 0.59 RPSI07_RS22460 ammonia channel protein 0.30 RPSI07_RS11705 DNA starvation/stationary phase protection protein low > 81
Ralstonia solanacearum GMI1000 0.59 RS_RS01690 ammonium transporter 0.30 RS_RS13455 DNA starvation/stationary phase protection protein low > 80
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS00425 ammonia channel protein 0.31 HSERO_RS02145 ferritin low > 78
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS10850 ammonia channel protein 0.30 RALBFv3_RS05595 DNA starvation/stationary phase protection protein low > 76
Ralstonia solanacearum UW163 0.58 UW163_RS02730 ammonia channel protein 0.30 UW163_RS08030 DNA starvation/stationary phase protection protein — —
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS06700 ammonium transporter 0.31 ABZR87_RS01245 Dps family protein low > 80
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS01760 ammonia channel protein 0.32 RR42_RS17370 ferritin — —
Lysobacter sp. OAE881 0.54 ABIE51_RS01435 ammonium transporter 0.31 ABIE51_RS05150 Dps family protein low > 62
Variovorax sp. SCN45 0.54 GFF5119 Ammonium transporter 0.28 GFF5550 DNA protection during starvation protein low > 127
Acidovorax sp. GW101-3H11 0.53 Ac3H11_3401 Ammonium transporter 0.27 Ac3H11_786 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) — —
Variovorax sp. OAS795 0.53 ABID97_RS03635 ammonium transporter 0.27 ABID97_RS01565 DNA starvation/stationary phase protection protein low > 91
Dechlorosoma suillum PS 0.53 Dsui_0763 ammonium transporter 0.29 Dsui_0822 DNA-binding ferritin-like protein (oxidative damage protectant) low > 51
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.249.1 Ammonium transporter 0.26 Xcc-8004.1478.1 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1922 Ammonium transporter 0.29 GFF2804 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 90
Acinetobacter radioresistens SK82 0.50 MPMX26_00150 Ammonia channel 0.26 MPMX26_01495 DNA protection during starvation protein 2 low > 36
Rhizobium sp. OAE497 0.49 ABIE40_RS18420 ammonium transporter 0.23 ABIE40_RS18810 DNA starvation/stationary phase protection protein low > 107
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_12705 ammonia channel protein 0.31 AO356_17990 ferritin low > 104
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_14925 Ammonium transporter 0.33 OKGIIK_02150 dps DNA-binding ferritin-like protein (oxidative damage protectant) low > 52
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_4412 Ammonium transporter 0.31 Pf6N2E2_5529 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 103
Pseudomonas sp. RS175 0.48 PFR28_04382 Ammonia channel 0.31 PFR28_03419 DNA protection during starvation protein 2 low > 88
Rhodospirillum rubrum S1H 0.48 Rru_A1129 Ammonium transporter (NCBI) 0.30 Rru_A0333 Ferritin and Dps (NCBI) low > 58
Pseudomonas stutzeri RCH2 0.48 Psest_3772 ammonium transporter 0.31 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) low > 67
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS08110 ammonium transporter 0.33 LRK54_RS12710 DNA starvation/stationary phase protection protein low > 59
Rhodanobacter denitrificans MT42 0.47 LRK55_RS07860 ammonium transporter 0.33 LRK55_RS12415 Dps family protein low > 63
Rhodopseudomonas palustris CGA009 0.47 TX73_001435 ammonium transporter 0.28 TX73_014275 DNA starvation/stationary phase protection protein low > 86
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS09495 ammonium transporter 0.34 ABZR86_RS19715 Dps family protein low > 74
Pseudomonas sp. S08-1 0.46 OH686_13760 Ammonium transporter 0.30 OH686_19105 DNA protection during starvation protein low > 80
Azospirillum brasilense Sp245 0.46 AZOBR_RS00845 ammonia channel protein 0.31 AZOBR_RS12945 ferritin — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS29300 ammonium transporter 0.31 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS29300 ammonium transporter 0.31 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_000655 Amt family ammonium transporter 0.32 ABIE53_000838 starvation-inducible DNA-binding protein low > 113
Azospirillum sp. SherDot2 0.44 MPMX19_02223 Ammonia channel 0.30 MPMX19_02373 DNA protection during starvation protein 2 low > 112
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_02012 ammonium transporter 0.32 H281DRAFT_04677 starvation-inducible DNA-binding protein low > 103
Shewanella sp. ANA-3 0.44 Shewana3_0778 ammonium transporter (RefSeq) 0.33 Shewana3_0985 Ferritin, Dps family protein (RefSeq) low > 73
Agrobacterium fabrum C58 0.44 Atu2758 ammonium transporter 0.23 Atu4777 hypothetical protein low > 89
Pseudomonas simiae WCS417 0.44 PS417_27615 ammonia channel protein 0.31 PS417_22480 ferritin low > 88
Bacteroides ovatus ATCC 8483 0.43 BACOVA_03766 ammonium transporter 0.46 BACOVA_05566 DNA protection during starvation protein low > 94
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0189 ammonium transporter 0.32 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0189 ammonium transporter 0.32 Psyr_1404 Ferritin and Dps low > 86
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_2256 ammonium transporter 0.22 Ga0059261_2678 DNA-binding ferritin-like protein (oxidative damage protectant) low > 68
Pseudomonas putida KT2440 0.43 PP_5233 ammonium transporter AmtB 0.30 PP_1210 DNA-binding stress protein low > 96
Castellaniella sp019104865 MT123 0.41 ABCV34_RS04770 ammonium transporter 0.26 ABCV34_RS03580 Dps family protein low > 48
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_01399 ammonium transporter/methylammonium transporter 0.30 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 67
Caulobacter crescentus NA1000 0.40 CCNA_01399 ammonium transporter/methylammonium transporter 0.30 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS09990 ammonium transporter 0.25 A4249_RS05095 DNA starvation/stationary phase protection protein low > 48
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14730 ammonia channel 0.20 PGA1_c27100 putative ferritin low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.32 ABZR88_RS18240 ammonium transporter 0.41 ABZR88_RS06705 Dps family protein low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS14975 ammonia channel protein 0.35 CA265_RS06325 DNA starvation/stationary phase protection protein low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_09145 ammonia channel protein 0.59 CA264_12205 DNA starvation/stationary phase protection protein low > 74
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2279 amtB ammonium transporter 0.29 Synpcc7942_0109 DNA-binding ferritin-like protein (oxidative damage protectant)-like low > 38
Echinicola vietnamensis KMM 6221, DSM 17526 0.28 Echvi_3535 ammonium transporter 0.51 Echvi_0586 DNA-binding ferritin-like protein (oxidative damage protectant) low > 79
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS16015 ammonium transporter 0.46 HMPREF1181_RS02165 DNA starvation/stationary phase protection protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.23 BT0544 ammonium transporter (NCBI ptt file) 0.46 BT4715 non-specific DNA-binding protein Dps (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS14275 ammonium transporter 0.53 ABI39_RS06080 DNA starvation/stationary phase protection protein low > 72
Shewanella oneidensis MR-1 0.20 SO0760 amt ammonium transporter (NCBI ptt file) 0.33 SO1158 Dps family protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.19 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) 0.32 Sama_2598 Dps family protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.18 HP15_274 ammonium/methylammonium permease 0.60 HP15_3253 ferritin-like DNA-binding protein low > 73
Dinoroseobacter shibae DFL-12 0.17 Dshi_0144 ammonium transporter (RefSeq) 0.19 Dshi_3839 Ferritin Dps family protein (RefSeq) low > 64
Alteromonas macleodii MIT1002 0.16 MIT1002_00417 Ammonia transporter 0.35 MIT1002_00525 DNA protection during starvation protein 2 low > 70
Vibrio cholerae E7946 ATCC 55056 0.16 CSW01_03200 ammonium transporter 0.59 CSW01_00700 DNA starvation/stationary phase protection protein low > 62

Not shown: 35 genomes with orthologs for IAI46_05085 only; 5 genomes with orthologs for IAI46_14135 only