Conservation of cofitness between HSERO_RS21535 and HSERO_RS15630 in Herbaspirillum seropedicae SmR1

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS21535 NADH dehydrogenase 1.0 HSERO_RS15630 exodeoxyribonuclease III 0.43 10
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS26840 NADH dehydrogenase 0.65 BPHYT_RS12925 exodeoxyribonuclease III low > 109
Paraburkholderia graminis OAS925 0.74 ABIE53_005905 alkyl hydroperoxide reductase subunit F 0.65 ABIE53_002802 exodeoxyribonuclease-3 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_02889 alkyl hydroperoxide reductase subunit F 0.64 H281DRAFT_00456 Exodeoxyribonuclease III — —
Paraburkholderia sabiae LMG 24235 0.74 QEN71_RS13375 alkyl hydroperoxide reductase subunit F 0.64 QEN71_RS05680 exodeoxyribonuclease III low > 153
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS17240 alkyl hydroperoxide reductase subunit F 0.64 ABZR87_RS13495 exodeoxyribonuclease III low > 80
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_22810 alkyl hydroperoxide reductase subunit F 0.35 AO356_01850 exodeoxyribonuclease III low > 104
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_448 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) low > 103
Pseudomonas sp. RS175 0.71 PFR28_02481 Alkyl hydroperoxide reductase subunit F 0.35 PFR28_01207 Exodeoxyribonuclease III low > 88
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_2928 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) 0.34 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_26960 alkyl hydroperoxide reductase subunit F 0.27 AO353_27875 exonuclease III low > 101
Pseudomonas simiae WCS417 0.71 PS417_14040 alkyl hydroperoxide reductase 0.28 PS417_16980 exonuclease III low > 88
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_5010 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) low > 87
Ralstonia solanacearum UW163 0.71 UW163_RS22810 alkyl hydroperoxide reductase subunit F 0.63 UW163_RS15010 exodeoxyribonuclease III — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS22265 alkyl hydroperoxide reductase subunit F 0.63 RALBFv3_RS01700 exodeoxyribonuclease III low > 76
Pseudomonas stutzeri RCH2 0.71 Psest_1134 alkyl hydroperoxide reductase, F subunit 0.37 Psest_1187 exodeoxyribonuclease III low > 67
Ralstonia solanacearum GMI1000 0.71 RS_RS18340 alkyl hydroperoxide reductase subunit F 0.63 RS_RS08025 exodeoxyribonuclease III low > 80
Rhodanobacter denitrificans MT42 0.71 LRK55_RS00485 alkyl hydroperoxide reductase subunit F 0.52 LRK55_RS08390 exodeoxyribonuclease III 0.90 28
Azospirillum sp. SherDot2 0.71 MPMX19_05836 Alkyl hydroperoxide reductase subunit F 0.42 MPMX19_04331 Exodeoxyribonuclease 0.42 37
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS00710 alkyl hydroperoxide reductase subunit F 0.52 LRK54_RS08625 exodeoxyribonuclease III low > 59
Ralstonia solanacearum PSI07 0.70 RPSI07_RS00935 alkyl hydroperoxide reductase subunit F 0.63 RPSI07_RS15785 exodeoxyribonuclease III low > 81
Rhodanobacter sp. FW510-T8 0.70 OKGIIK_06550 ahpF alkyl hydroperoxide reductase subunit F 0.55 OKGIIK_15390 xth exodeoxyribonuclease III low > 52
Pseudomonas putida KT2440 0.70 PP_2440 Alkyl hydroperoxide reductase subunit F 0.34 PP_2707 putative Exodeoxyribonuclease III low > 96
Castellaniella sp019104865 MT123 0.70 ABCV34_RS09915 alkyl hydroperoxide reductase subunit F 0.62 ABCV34_RS03115 exodeoxyribonuclease III low > 48
Azospirillum brasilense Sp245 0.69 AZOBR_RS20515 alkyl hydroperoxide reductase subunit F 0.41 AZOBR_RS15540 exodeoxyribonuclease III 0.63 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_2974 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.27 Psyr_2476 Exodeoxyribonuclease III low > 86
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_2974 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.27 Psyr_2476 Exodeoxyribonuclease III low > 86
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS08495 alkyl hydroperoxide reductase subunit F 0.56 ABZR86_RS14930 exodeoxyribonuclease III low > 74
Pseudomonas fluorescens SBW25 0.69 PFLU_RS14575 alkyl hydroperoxide reductase subunit F 0.29 PFLU_RS18930 exodeoxyribonuclease III low > 109
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS14575 alkyl hydroperoxide reductase subunit F 0.29 PFLU_RS18930 exodeoxyribonuclease III low > 109
Lysobacter sp. OAE881 0.69 ABIE51_RS05480 alkyl hydroperoxide reductase subunit F 0.55 ABIE51_RS01755 exodeoxyribonuclease III low > 62
Rhodospirillum rubrum S1H 0.68 Rru_A1417 thioredoxin-disulfide reductase (NCBI) 0.36 Rru_A1784 exodeoxyribonuclease III xth (NCBI) — —
Pseudomonas sp. S08-1 0.68 OH686_18675 alkyl hydroperoxide reductase subunit F 0.33 OH686_23775 exodeoxyribonuclease III 0.41 47
Variovorax sp. SCN45 0.67 GFF2825 Alkyl hydroperoxide reductase protein F 0.61 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) low > 127
Dechlorosoma suillum PS 0.67 Dsui_1902 alkyl hydroperoxide reductase, F subunit 0.64 Dsui_0044 exodeoxyribonuclease III low > 51
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.4222.1 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) 0.53 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) low > 74
Acidovorax sp. GW101-3H11 0.66 Ac3H11_232 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) 0.60 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.65 A4249_RS04545 alkyl hydroperoxide reductase subunit F 0.39 A4249_RS02655 exodeoxyribonuclease III low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF3915 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) 0.59 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) low > 90
Caulobacter crescentus NA1000 0.65 CCNA_03013 alkyl hydroperoxide reductase subunit F 0.41 CCNA_02090 exodeoxyribonuclease III low > 66
Caulobacter crescentus NA1000 Δfur 0.65 CCNA_03013 alkyl hydroperoxide reductase subunit F 0.41 CCNA_02090 exodeoxyribonuclease III — —
Marinobacter adhaerens HP15 0.64 HP15_3619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.28 HP15_1776 exonuclease III low > 73
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_0156 alkyl hydroperoxide reductase subunit F 0.32 Ga0059261_3499 exodeoxyribonuclease III low > 68
Shewanella sp. ANA-3 0.62 Shewana3_3326 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) 0.28 Shewana3_1503 exonuclease III (RefSeq) low > 73
Shewanella oneidensis MR-1 0.62 SO0956 ahpF alkyl hydroperoxide reductase, F subunit (NCBI ptt file) 0.28 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) low > 76
Klebsiella michiganensis M5al 0.62 BWI76_RS07945 alkyl hydroperoxide reductase subunit F 0.29 BWI76_RS11665 exodeoxyribonuclease III low > 92
Shewanella amazonensis SB2B 0.61 Sama_0618 alkyl hydroperoxide reductase, F subunit (RefSeq) 0.26 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.36 4
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2349 alkyl hydroperoxide reductase subunit F 0.29 EX28DRAFT_1753 exodeoxyribonuclease III low > 76
Shewanella loihica PV-4 0.60 Shew_0793 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) 0.31 Shew_2262 exonuclease III (RefSeq) — —
Escherichia coli ECOR38 0.60 HEPCGN_00775 Alkyl hydroperoxide reductase subunit F 0.29 HEPCGN_05265 xthA exodeoxyribonuclease III 0.43 18
Escherichia coli ECRC99 0.60 KEDOAH_20465 Alkyl hydroperoxide reductase subunit F 0.29 KEDOAH_01210 xthA exodeoxyribonuclease III — —
Escherichia coli ECRC100 0.60 OKFHMN_07505 Alkyl hydroperoxide reductase subunit F 0.29 OKFHMN_26900 xthA exodeoxyribonuclease III low > 80
Escherichia coli ECRC62 0.60 BNILDI_21890 Alkyl hydroperoxide reductase subunit F 0.29 BNILDI_16200 xthA exodeoxyribonuclease III low > 75
Escherichia coli ECRC101 0.60 MCAODC_26720 Alkyl hydroperoxide reductase subunit F 0.29 MCAODC_18510 xthA exodeoxyribonuclease III low > 87
Escherichia coli ECRC102 0.60 NIAGMN_05560 Alkyl hydroperoxide reductase subunit F 0.29 NIAGMN_01165 xthA exodeoxyribonuclease III — —
Escherichia coli ECOR27 0.60 NOLOHH_23880 Alkyl hydroperoxide reductase subunit F 0.29 NOLOHH_17415 xthA exodeoxyribonuclease III low > 75
Pectobacterium carotovorum WPP14 0.60 HER17_RS02550 alkyl hydroperoxide reductase subunit F 0.30 HER17_RS11085 exodeoxyribonuclease III low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_03099 Alkyl hydroperoxide reductase subunit F 0.29 OHPLBJKB_01983 Exodeoxyribonuclease III low > 73
Escherichia fergusonii Becca 0.60 EFB2_03485 Alkyl hydroperoxide reductase subunit F 0.29 EFB2_02244 Exodeoxyribonuclease III low > 86
Escherichia coli ECRC98 0.60 JDDGAC_11150 Alkyl hydroperoxide reductase subunit F 0.29 JDDGAC_01475 xthA exodeoxyribonuclease III low > 86
Escherichia coli Nissle 1917 0.60 ECOLIN_RS03325 alkyl hydroperoxide reductase subunit F 0.28 ECOLIN_RS09750 exodeoxyribonuclease III low > 55
Escherichia coli BL21 0.60 ECD_00575 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding 0.29 ECD_01718 exonuclease III — —
Escherichia coli BW25113 0.60 b0606 ahpF alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) 0.29 b1749 xthA exonuclease III (NCBI) low > 76
Pantoea sp. MT58 0.60 IAI47_06795 alkyl hydroperoxide reductase subunit F 0.28 IAI47_08990 exodeoxyribonuclease III low > 76
Enterobacter sp. TBS_079 0.60 MPMX20_01272 Alkyl hydroperoxide reductase subunit F 0.30 MPMX20_01864 Exodeoxyribonuclease III low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4514 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) 0.29 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) low > 78
Dickeya dianthicola ME23 0.59 DZA65_RS02570 alkyl hydroperoxide reductase subunit F 0.29 DZA65_RS10795 exodeoxyribonuclease III low > 75
Dickeya dianthicola 67-19 0.59 HGI48_RS02465 alkyl hydroperoxide reductase subunit F 0.28 HGI48_RS10320 exodeoxyribonuclease III low > 71
Dickeya dadantii 3937 0.59 DDA3937_RS02520 alkyl hydroperoxide reductase subunit F 0.29 DDA3937_RS10310 exodeoxyribonuclease III low > 74
Alteromonas macleodii MIT1002 0.46 MIT1002_01785 NADH dehydrogenase 0.25 MIT1002_01652 Exodeoxyribonuclease III low > 70
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0279 alkyl hydroperoxide reductase, F subunit 0.29 B158DRAFT_1291 exodeoxyribonuclease III 0.48 10

Not shown: 7 genomes with orthologs for HSERO_RS21535 only; 18 genomes with orthologs for HSERO_RS15630 only