Conservation of cofitness between HSERO_RS17780 and HSERO_RS07025 in Herbaspirillum seropedicae SmR1

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS17780 50S rRNA methyltransferase 1.0 HSERO_RS07025 ATP-dependent Clp protease ClpS 0.43 5
Paraburkholderia sabiae LMG 24235 0.78 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 QEN71_RS03000 ATP-dependent Clp protease adapter ClpS low > 153
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.80 ABZR87_RS00440 ATP-dependent Clp protease adapter ClpS low > 80
Paraburkholderia graminis OAS925 0.77 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.79 ABIE53_003307 ATP-dependent Clp protease adaptor protein ClpS — —
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.79 H281DRAFT_04083 ATP-dependent Clp protease adaptor protein ClpS low > 103
Cupriavidus basilensis FW507-4G11 0.75 RR42_RS04710 50S rRNA methyltransferase 0.78 RR42_RS17110 ATP-dependent Clp protease adapter protein ClpS low > 128
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.79 BPHYT_RS15715 ATP-dependent Clp protease adapter protein ClpS low > 109
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.80 RALBFv3_RS04815 ATP-dependent Clp protease adaptor ClpS low > 76
Ralstonia solanacearum UW163 0.74 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.80 UW163_RS08855 ATP-dependent Clp protease adaptor ClpS — —
Ralstonia solanacearum GMI1000 0.73 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.80 RS_RS12375 ATP-dependent Clp protease adaptor ClpS — —
Ralstonia solanacearum PSI07 0.73 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.80 RPSI07_RS12570 ATP-dependent Clp protease adaptor ClpS low > 81
Acidovorax sp. GW101-3H11 0.56 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.65 Ac3H11_2457 ATP-dependent Clp protease adaptor protein ClpS 0.23 72
Variovorax sp. OAS795 0.56 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 ABID97_RS16915 ATP-dependent Clp protease adapter ClpS low > 91
Dechlorosoma suillum PS 0.55 Dsui_0451 hypothetical protein 0.69 Dsui_0008 hypothetical protein low > 51
Shewanella loihica PV-4 0.49 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.52 Shew_1565 ATP-dependent Clp protease adaptor protein ClpS (RefSeq) — —
Pectobacterium carotovorum WPP14 0.49 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 HER17_RS12405 ATP-dependent Clp protease adapter ClpS low > 75
Pantoea sp. MT58 0.48 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 IAI47_12950 ATP-dependent Clp protease adapter ClpS low > 76
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 CSW01_05800 ATP-dependent Clp protease adaptor ClpS low > 62
Rahnella sp. WP5 0.48 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 EX31_RS18565 ATP-dependent Clp protease adapter ClpS low > 89
Serratia liquefaciens MT49 0.48 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 IAI46_08510 ATP-dependent Clp protease adapter ClpS low > 86
Dickeya dianthicola ME23 0.48 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 DZA65_RS09880 ATP-dependent Clp protease adapter ClpS low > 75
Dickeya dadantii 3937 0.48 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 DDA3937_RS09555 ATP-dependent Clp protease adapter ClpS — —
Erwinia tracheiphila SCR3 0.48 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 LU632_RS09700 clpS ATP-dependent Clp protease adapter ClpS low > 74
Dickeya dianthicola 67-19 0.47 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 HGI48_RS09570 ATP-dependent Clp protease adapter ClpS — —
Shewanella amazonensis SB2B 0.47 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.49 Sama_2057 clpS ATP-dependent Clp protease adaptor protein ClpS (RefSeq) low > 62
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.50 EX28DRAFT_2051 Uncharacterized conserved protein — —
Klebsiella michiganensis M5al 0.47 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 BWI76_RS09610 ATP-dependent Clp protease adaptor ClpS low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.50 GFF4902 ATP-dependent Clp protease adaptor protein ClpS low > 78
Alteromonas macleodii MIT1002 0.46 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.51 MIT1002_01833 ATP-dependent Clp protease adapter protein ClpS — —
Enterobacter sp. TBS_079 0.46 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.50 MPMX20_01543 ATP-dependent Clp protease adapter protein ClpS low > 85
Escherichia coli Nissle 1917 0.46 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 ECOLIN_RS04690 ATP-dependent Clp protease adapter ClpS — —
Escherichia coli BW25113 0.46 b0636 ybeA hypothetical protein (NCBI) 0.51 b0881 clpS ATP-dependent Clp protease adaptor protein ClpS (NCBI) low > 76
Escherichia coli BL21 0.46 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.51 ECD_00886 regulatory protein for ClpA substrate specificity — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.51 OHPLBJKB_02787 ATP-dependent Clp protease adapter protein ClpS — —
Escherichia coli ECRC102 0.45 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 NIAGMN_03830 clpS ATP-dependent Clp protease adapter ClpS — —
Shewanella oneidensis MR-1 0.45 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.50 SO2627 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.45 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 MCAODC_25005 clpS ATP-dependent Clp protease adapter ClpS low > 87
Escherichia coli ECOR38 0.45 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 HEPCGN_22895 clpS ATP-dependent Clp protease adapter ClpS low > 87
Escherichia coli ECRC62 0.45 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 BNILDI_20440 clpS ATP-dependent Clp protease adapter ClpS — —
Escherichia coli ECRC100 0.45 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 OKFHMN_05790 clpS ATP-dependent Clp protease adapter ClpS low > 80
Escherichia coli ECRC98 0.45 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 JDDGAC_09425 clpS ATP-dependent Clp protease adapter ClpS — —
Escherichia coli ECOR27 0.45 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 NOLOHH_22185 clpS ATP-dependent Clp protease adapter ClpS low > 75
Escherichia coli ECRC99 0.45 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 KEDOAH_22120 clpS ATP-dependent Clp protease adapter ClpS — —
Shewanella sp. ANA-3 0.45 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.50 Shewana3_1752 clpS ATP-dependent Clp protease adaptor protein ClpS (RefSeq) — —
Escherichia fergusonii Becca 0.45 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.51 EFB2_03180 ATP-dependent Clp protease adapter protein ClpS low > 86
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 OKGIIK_06885 clpS ATP-dependent Clp protease adapter ClpS low > 52
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 ABZR86_RS02195 ATP-dependent Clp protease adapter ClpS low > 74
Rhodanobacter denitrificans MT42 0.43 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 LRK55_RS00165 ATP-dependent Clp protease adapter ClpS low > 63
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 LRK54_RS00425 ATP-dependent Clp protease adapter ClpS low > 59
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_0085 rRNA large subunit m3Psi methyltransferase RlmH 0.51 B158DRAFT_1504 Uncharacterized conserved protein low > 40
Pseudomonas simiae WCS417 0.41 PS417_24730 50S rRNA methyltransferase 0.50 PS417_16515 Clp protease ClpS — —
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.52 PFLU_RS18555 ATP-dependent Clp protease adapter ClpS low > 109
Pseudomonas fluorescens SBW25 0.41 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.52 PFLU_RS18555 ATP-dependent Clp protease adapter ClpS low > 109
Lysobacter sp. OAE881 0.41 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 ABIE51_RS11495 ATP-dependent Clp protease adapter ClpS low > 62
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_06480 50S rRNA methyltransferase 0.49 AO353_27680 ATP-dependent Clp protease adaptor ClpS low > 101
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_15305 50S rRNA methyltransferase 0.49 AO356_22145 ATP-dependent Clp protease adaptor ClpS low > 104
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4366 Protein of unknown function DUF163 0.49 Psyr_3184 ATP-dependent Clp protease adaptor protein ClpS — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4366 Protein of unknown function DUF163 0.49 Psyr_3184 ATP-dependent Clp protease adaptor protein ClpS low > 86
Pseudomonas stutzeri RCH2 0.40 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.48 Psest_2026 Uncharacterized conserved protein low > 67
Pseudomonas sp. S08-1 0.40 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.48 OH686_00230 ATP-dependent Clp protease adaptor protein ClpS low > 80
Pseudomonas putida KT2440 0.40 PP_4808 23S rRNA m3psi1915 methyltransferase 0.49 PP_4009 ATP-dependent Clp protease adapter protein ClpS low > 96
Magnetospirillum magneticum AMB-1 0.37 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 AMB_RS05700 ATP-dependent Clp protease adapter ClpS low > 64
Phaeobacter inhibens DSM 17395 0.34 PGA1_c29750 putative ribosomal RNA large subunit methyltransferase 0.45 PGA1_c30000 ATP-dependent Clp protease adaptor protein ClpS low > 62
Azospirillum brasilense Sp245 0.34 AZOBR_RS04060 50S rRNA methyltransferase 0.49 AZOBR_RS05180 Clp protease ClpS low > 97
Azospirillum sp. SherDot2 0.32 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.53 MPMX19_00504 ATP-dependent Clp protease adapter protein ClpS low > 112
Sinorhizobium meliloti 1021 0.31 SMc03781 rRNA large subunit methyltransferase 0.52 SMc02110 ATP-dependent Clp protease adaptor protein ClpS — —
Rhizobium sp. OAE497 0.30 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 ABIE40_RS08860 ATP-dependent Clp protease adapter ClpS low > 107
Caulobacter crescentus NA1000 0.28 CCNA_03546 rRNA large subunit methyltransferase 0.53 CCNA_02552 ATP-dependent Clp protease adaptor protein ClpS low > 66
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_03546 rRNA large subunit methyltransferase 0.53 CCNA_02552 ATP-dependent Clp protease adaptor protein ClpS low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS14825 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 A4249_RS08395 ATP-dependent Clp protease adapter ClpS low > 48
Agrobacterium fabrum C58 0.27 Atu2776 hypothetical protein 0.54 Atu1363 ATP-dependent Clp protease adaptor protein ClpS — —
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.33 HMPREF1058_RS09035 ATP-dependent Clp protease adaptor ClpS low > 67
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.32 ABI39_RS03340 ATP-dependent Clp protease adaptor ClpS low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU1254 conserved hypothetical protein (TIGR) 0.46 DVU1601 ATP-dependent Clp protease adaptor protein ClpS (TIGR) low > 55

Not shown: 21 genomes with orthologs for HSERO_RS17780 only; 4 genomes with orthologs for HSERO_RS07025 only