Conservation of cofitness between HSERO_RS08070 and HSERO_RS06245 in Herbaspirillum seropedicae SmR1

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08070 endonuclease IV 1.0 HSERO_RS06245 catalase-peroxidase 0.37 4
Ralstonia solanacearum PSI07 0.76 RPSI07_RS19265 endonuclease III 0.72 RPSI07_RS20110 catalase/peroxidase HPI low > 81
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS06080 endonuclease IV 0.75 BPHYT_RS10310 catalase-peroxidase low > 109
Marinobacter adhaerens HP15 0.74 HP15_1285 endonuclease III 0.55 HP15_1397 peroxidase/catalase HPI low > 73
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS14195 endonuclease III 0.73 RALBFv3_RS13105 catalase/peroxidase HPI low > 76
Ralstonia solanacearum UW163 0.74 UW163_RS11660 endonuclease III 0.73 UW163_RS00460 catalase/peroxidase HPI — —
Pseudomonas stutzeri RCH2 0.74 Psest_3118 endonuclease III 0.62 Psest_2741 catalase/peroxidase HPI low > 67
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS09915 endonuclease III 0.65 ABZR87_RS01240 catalase/peroxidase HPI low > 80
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS05970 endonuclease III 0.72 RR42_RS26270 hydroperoxidase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.70 H281DRAFT_00053 catalase-peroxidase low > 103
Pectobacterium carotovorum WPP14 0.73 HER17_RS10860 endonuclease III 0.56 HER17_RS09165 catalase/peroxidase HPI low > 75
Pseudomonas sp. S08-1 0.73 OH686_03910 endonuclease III 0.64 OH686_15490 catalase/peroxidase HPI low > 80
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 0.72 Pf6N2E2_3430 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 103
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS08185 endonuclease III 0.70 ABZR86_RS00615 catalase/peroxidase HPI low > 74
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_04085 endonuclease III 0.70 AO353_23210 hydroperoxidase low > 101
Escherichia coli BL21 0.72 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.60 ECD_03828 catalase-peroxidase HPI, heme b-containing — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.72 Psyr_4208 heme catalase/peroxidase low > 86
Paraburkholderia sabiae LMG 24235 0.72 QEN71_RS24560 endonuclease III 0.75 QEN71_RS29740 catalase/peroxidase HPI low > 153
Rahnella sp. WP5 0.72 EX31_RS06590 endonuclease III 0.59 EX31_RS11140 catalase/peroxidase HPI low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.72 Psyr_4208 heme catalase/peroxidase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02093 Endonuclease III 0.60 OHPLBJKB_04108 Catalase-peroxidase low > 73
Escherichia coli ECRC62 0.72 BNILDI_16835 nth endonuclease III 0.60 BNILDI_05730 katG catalase/peroxidase HPI low > 75
Escherichia coli BW25113 0.72 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.60 b3942 katG catalase/hydroperoxidase HPI(I) (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_18045 nth endonuclease III 0.60 NOLOHH_05805 katG catalase/peroxidase HPI — —
Escherichia coli ECOR38 0.72 HEPCGN_05910 nth endonuclease III 0.60 HEPCGN_12305 katG catalase/peroxidase HPI low > 87
Escherichia coli Nissle 1917 0.72 ECOLIN_RS09110 endonuclease III 0.60 ECOLIN_RS22765 catalase/peroxidase HPI — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.70 Pf1N1B4_4230 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 87
Erwinia tracheiphila SCR3 0.71 LU632_RS11305 nth endonuclease III 0.60 LU632_RS19500 katG catalase/peroxidase HPI — —
Escherichia fergusonii Becca 0.71 EFB2_02359 Endonuclease III 0.60 EFB2_04671 Catalase-peroxidase low > 86
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_18345 endonuclease III 0.72 AO356_07735 hydroperoxidase low > 104
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.61 EX28DRAFT_4414 catalase/peroxidase HPI low > 76
Enterobacter sp. TBS_079 0.71 MPMX20_02005 Endonuclease III 0.61 MPMX20_04528 Catalase-peroxidase low > 85
Pantoea sp. MT58 0.71 IAI47_10475 endonuclease III 0.58 IAI47_07215 catalase/peroxidase HPI low > 76
Escherichia coli ECRC102 0.71 NIAGMN_00540 nth endonuclease III 0.60 NIAGMN_11415 katG catalase/peroxidase HPI — —
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_05145 endonuclease III 0.58 CSW01_07835 catalase-peroxidase low > 62
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.58 B158DRAFT_0261 catalase/peroxidase HPI low > 40
Escherichia coli ECRC98 0.71 JDDGAC_02115 nth endonuclease III 0.60 JDDGAC_17285 katG catalase/peroxidase HPI low > 86
Serratia liquefaciens MT49 0.71 IAI46_11455 endonuclease III 0.67 IAI46_17030 catalase/peroxidase HPI low > 86
Escherichia coli ECRC100 0.71 OKFHMN_27525 nth endonuclease III 0.60 OKFHMN_13660 katG catalase/peroxidase HPI low > 80
Escherichia coli ECRC99 0.71 KEDOAH_00580 nth endonuclease III 0.60 KEDOAH_14500 katG catalase/peroxidase HPI — —
Escherichia coli ECRC101 0.71 MCAODC_17885 nth endonuclease III 0.60 MCAODC_04160 katG catalase/peroxidase HPI low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3641 Endonuclease III (EC 4.2.99.18) 0.61 GFF2330 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 78
Pseudomonas putida KT2440 0.71 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.72 PP_3668 Catalase-peroxidase low > 96
Dickeya dianthicola ME23 0.71 DZA65_RS11025 endonuclease III 0.70 DZA65_RS08685 catalase/peroxidase HPI low > 75
Klebsiella michiganensis M5al 0.71 BWI76_RS16385 endonuclease III 0.60 BWI76_RS13925 catalase/peroxidase HPI — —
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.56 Dsui_2233 catalase/peroxidase HPI low > 51
Dickeya dadantii 3937 0.70 DDA3937_RS10545 endonuclease III 0.70 DDA3937_RS07265 catalase/peroxidase HPI low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS10545 endonuclease III 0.70 HGI48_RS08090 catalase/peroxidase HPI low > 71
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.71 Xcc-8004.3762.1 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 74
Shewanella loihica PV-4 0.69 Shew_2072 endonuclease III (RefSeq) 0.52 Shew_0709 catalase/peroxidase HPI (RefSeq) low > 60
Variovorax sp. SCN45 0.68 GFF418 Endonuclease III (EC 4.2.99.18) 0.73 GFF4692 Catalase-peroxidase KatG (EC 1.11.1.21) low > 127
Shewanella amazonensis SB2B 0.68 Sama_1836 endonuclease III (RefSeq) 0.58 Sama_0745 catalase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.67 SO2514 nth endonuclease III (NCBI ptt file) 0.60 SO4405 katG-2 catalase/peroxidase HPI (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.63 GFF637 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 90
Shewanella sp. ANA-3 0.67 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.58 Shewana3_0306 catalase/peroxidase HPI (RefSeq) low > 73
Acidovorax sp. GW101-3H11 0.66 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.69 Ac3H11_135 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) 0.59 4
Lysobacter sp. OAE881 0.66 ABIE51_RS07560 endonuclease III 0.69 ABIE51_RS07780 catalase/peroxidase HPI low > 62
Azospirillum sp. SherDot2 0.59 MPMX19_02500 Endonuclease III 0.64 MPMX19_03084 Catalase-peroxidase low > 112
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.54 Ga0059261_3628 catalase/peroxidase HPI low > 68
Bosea sp. OAE506 0.57 ABIE41_RS03410 endonuclease III 0.54 ABIE41_RS01200 catalase/peroxidase HPI low > 77
Dinoroseobacter shibae DFL-12 0.56 Dshi_3023 endonuclease III (RefSeq) 0.49 Dshi_3801 catalase/peroxidase HPI (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.55 PGA1_c29040 endonuclease III 0.53 PGA1_78p00050 peroxidase/catalase HPI low > 62
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_03847 endonuclease III 0.63 CCNA_03138 peroxidase/catalase katG low > 67
Caulobacter crescentus NA1000 0.51 CCNA_03847 endonuclease III 0.63 CCNA_03138 peroxidase/catalase katG low > 66
Mucilaginibacter yixingensis YX-36 DSM 26809 0.41 ABZR88_RS16725 endonuclease III 0.66 ABZR88_RS16460 catalase/peroxidase HPI low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1263 endonuclease III 0.66 Echvi_1165 catalase/peroxidase HPI low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS00605 endonuclease III 0.67 CA265_RS00900 catalase/peroxidase HPI low > 88
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.57 Synpcc7942_1656 katG catalase/peroxidase HPI low > 38
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.52 MIT1002_03345 Catalase-peroxidase 2 precursor low > 70
Mycobacterium tuberculosis H37Rv 0.30 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) 0.55 Rv1908c Catalase-peroxidase-peroxynitritase T KatG low > 58

Not shown: 25 genomes with orthologs for HSERO_RS08070 only; 5 genomes with orthologs for HSERO_RS06245 only