Conservation of cofitness between HER17_RS18005 and HER17_RS02295 in Pectobacterium carotovorum WPP14

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS18005 glycine cleavage system aminomethyltransferase GcvT 1.0 HER17_RS02295 isocitrate lyase 0.56 18
Dickeya dadantii 3937 0.82 DDA3937_RS03245 glycine cleavage system aminomethyltransferase GcvT 0.91 DDA3937_RS19055 isocitrate lyase low > 74
Dickeya dianthicola 67-19 0.82 HGI48_RS03390 glycine cleavage system aminomethyltransferase GcvT 0.92 HGI48_RS19145 isocitrate lyase low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS03435 glycine cleavage system aminomethyltransferase GcvT 0.92 DZA65_RS20265 isocitrate lyase low > 75
Serratia liquefaciens MT49 0.81 IAI46_20860 glycine cleavage system aminomethyltransferase GcvT 0.90 IAI46_23190 isocitrate lyase low > 86
Rahnella sp. WP5 0.81 EX31_RS21510 glycine cleavage system aminomethyltransferase GcvT 0.89 EX31_RS11745 isocitrate lyase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF3005 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.89 GFF1352 Isocitrate lyase (EC 4.1.3.1) low > 78
Enterobacter sp. TBS_079 0.78 MPMX20_03764 Aminomethyltransferase 0.87 MPMX20_00232 Isocitrate lyase low > 85
Escherichia coli Nissle 1917 0.78 ECOLIN_RS16175 glycine cleavage system aminomethyltransferase GcvT 0.88 ECOLIN_RS26870 isocitrate lyase — —
Klebsiella michiganensis M5al 0.78 BWI76_RS23880 Aminomethyltransferase (EC 2.1.2.10) (from data) 0.88 BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) (from data) low > 92
Escherichia coli BL21 0.78 ECD_02737 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex 0.88 ECD_03887 isocitrate lyase low > 61
Escherichia coli ECRC62 0.78 BNILDI_09970 gcvT glycine cleavage system aminomethyltransferase GcvT 0.88 BNILDI_06110 aceA isocitrate lyase low > 75
Escherichia coli ECOR27 0.78 NOLOHH_11435 gcvT glycine cleavage system aminomethyltransferase GcvT 0.88 NOLOHH_05410 aceA isocitrate lyase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_00810 Aminomethyltransferase 0.88 OHPLBJKB_04035 Isocitrate lyase low > 73
Escherichia coli BW25113 0.78 b2905 gcvT glycine cleavage system aminomethyltransferase T (NCBI) 0.88 b4015 aceA isocitrate lyase (NCBI) low > 76
Escherichia fergusonii Becca 0.77 EFB2_00997 Aminomethyltransferase 0.88 EFB2_04595 Isocitrate lyase low > 86
Escherichia coli ECOR38 0.77 HEPCGN_18810 gcvT glycine cleavage system aminomethyltransferase GcvT 0.88 HEPCGN_11905 aceA isocitrate lyase low > 87
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2957 glycine cleavage system T protein 0.88 EX28DRAFT_4329 isocitrate lyase low > 76
Escherichia coli ECRC100 0.77 OKFHMN_19520 gcvT glycine cleavage system aminomethyltransferase GcvT 0.89 OKFHMN_13265 aceA isocitrate lyase low > 80
Escherichia coli ECRC102 0.77 NIAGMN_17285 gcvT glycine cleavage system aminomethyltransferase GcvT 0.89 NIAGMN_11015 aceA isocitrate lyase — —
Escherichia coli ECRC99 0.77 KEDOAH_08620 gcvT glycine cleavage system aminomethyltransferase GcvT 0.89 KEDOAH_14895 aceA isocitrate lyase — —
Escherichia coli ECRC101 0.77 MCAODC_10040 gcvT glycine cleavage system aminomethyltransferase GcvT 0.89 MCAODC_03765 aceA isocitrate lyase low > 87
Escherichia coli ECRC98 0.77 JDDGAC_23160 gcvT glycine cleavage system aminomethyltransferase GcvT 0.89 JDDGAC_16890 aceA isocitrate lyase low > 86
Pantoea sp. MT58 0.77 IAI47_03765 glycine cleavage system aminomethyltransferase GcvT 0.83 IAI47_18005 isocitrate lyase low > 76
Shewanella amazonensis SB2B 0.66 Sama_2721 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) 0.80 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) low > 62
Shewanella loihica PV-4 0.64 Shew_3064 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) 0.82 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) 0.47 14
Shewanella oneidensis MR-1 0.64 SO0779 gcvT glycine cleavage system T protein (NCBI ptt file) 0.80 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) low > 76
Shewanella sp. ANA-3 0.63 Shewana3_3501 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) 0.80 Shewana3_2942 isocitrate lyase (RefSeq) 0.35 45
Pseudomonas stutzeri RCH2 0.57 Psest_0181 glycine cleavage system T protein 0.15 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) low > 67
Pseudomonas sp. S08-1 0.56 OH686_11175 glycine cleavage system T protein 0.14 OH686_00170 Isocitrate lyase low > 80
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0246 aminomethyltransferase 0.72 Psyr_3196 isocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0246 aminomethyltransferase 0.72 Psyr_3196 isocitrate lyase low > 86
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_902 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.72 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) low > 87
Pseudomonas simiae WCS417 0.53 PS417_27255 glycine cleavage system protein T 0.73 PS417_16570 isocitrate lyase low > 88
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28915 glycine cleavage system aminomethyltransferase GcvT 0.72 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28915 glycine cleavage system aminomethyltransferase GcvT 0.72 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas sp. RS175 0.53 PFR28_04316 Aminomethyltransferase 0.72 PFR28_02625 Isocitrate lyase low > 88
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_08735 glycine cleavage system protein T 0.73 AO353_27735 isocitrate lyase low > 101
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_4485 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.72 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) low > 103
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS18875 glycine cleavage system aminomethyltransferase GcvT 0.66 ABZR86_RS13490 isocitrate lyase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.1567.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.67 Xcc-8004.311.1 Isocitrate lyase (EC 4.1.3.1) low > 74
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_13035 glycine cleavage system protein T 0.72 AO356_22080 isocitrate lyase low > 104
Pseudomonas putida KT2440 0.51 PP_5194 aminomethyltransferase 0.72 PP_4116 isocitrate lyase low > 96
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_01305 gcvT glycine cleavage system aminomethyltransferase GcvT 0.67 OKGIIK_13320 aceA isocitrate lyase low > 52
Lysobacter sp. OAE881 0.50 ABIE51_RS16365 glycine cleavage system aminomethyltransferase GcvT 0.68 ABIE51_RS00190 isocitrate lyase low > 62
Rhodanobacter denitrificans MT42 0.50 LRK55_RS05280 glycine cleavage system aminomethyltransferase GcvT 0.67 LRK55_RS10225 isocitrate lyase low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS05510 glycine cleavage system aminomethyltransferase GcvT 0.67 LRK54_RS10585 isocitrate lyase 0.39 27
Dechlorosoma suillum PS 0.49 Dsui_2735 glycine cleavage system T protein 0.73 Dsui_0011 isocitrate lyase low > 51
Castellaniella sp019104865 MT123 0.49 ABCV34_RS08845 glycine cleavage system aminomethyltransferase GcvT 0.70 ABCV34_RS06915 isocitrate lyase low > 48
Ralstonia solanacearum GMI1000 0.46 RS_RS16500 aminomethyltransferase 0.66 RS_RS06810 isocitrate lyase low > 80
Ralstonia solanacearum UW163 0.46 UW163_RS04960 glycine cleavage system protein T 0.66 UW163_RS13480 isocitrate lyase — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS08650 glycine cleavage system protein T 0.66 RALBFv3_RS00150 isocitrate lyase low > 76
Ralstonia solanacearum PSI07 0.46 RPSI07_RS08585 glycine cleavage system protein T 0.66 RPSI07_RS17335 isocitrate lyase low > 81
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS03925 glycine cleavage system aminomethyltransferase GcvT 0.66 ABZR87_RS11590 isocitrate lyase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02411 aminomethyltransferase 0.67 H281DRAFT_00580 isocitrate lyase 0.33 84
Paraburkholderia graminis OAS925 0.45 ABIE53_000236 aminomethyltransferase 0.68 ABIE53_002536 isocitrate lyase 0.39 58
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS19320 glycine cleavage system protein T 0.66 BPHYT_RS12285 isocitrate lyase low > 109
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS29205 glycine cleavage system aminomethyltransferase GcvT 0.68 QEN71_RS06270 isocitrate lyase 0.55 13
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS20060 glycine cleavage system protein T 0.68 RR42_RS12200 isocitrate lyase low > 128
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_00210 glycine cleavage system protein T 0.61 CA264_09255 isocitrate lyase — —
Mycobacterium tuberculosis H37Rv 0.27 Rv2211c Probable aminomethyltransferase GcvT (glycine cleavage system T protein) 0.58 Rv0467 Isocitrate lyase Icl (isocitrase) (isocitratase) — —
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03465 glycine cleavage system aminomethyltransferase T 0.16 CCNA_01841 isocitrate lyase low > 67
Caulobacter crescentus NA1000 0.24 CCNA_03465 glycine cleavage system aminomethyltransferase T 0.16 CCNA_01841 isocitrate lyase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS09325 glycine cleavage system aminomethyltransferase GcvT 0.55 A4249_RS02595 isocitrate lyase 0.61 24
Vibrio cholerae E7946 ATCC 55056 0.22 CSW01_15350 glycine cleavage system aminomethyltransferase T 0.78 CSW01_03830 isocitrate lyase low > 62
Sinorhizobium meliloti 1021 0.22 SMc02047 glycine cleavage system aminomethyltransferase T 0.58 SMc00768 isocitrate lyase 0.75 5
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF5213 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.72 GFF4147 Isocitrate lyase (EC 4.1.3.1) low > 90
Azospirillum sp. SherDot2 0.22 MPMX19_01029 Aminomethyltransferase 0.58 MPMX19_05830 Isocitrate lyase low > 112
Rhizobium sp. OAE497 0.22 ABIE40_RS09940 glycine cleavage system aminomethyltransferase GcvT 0.58 ABIE40_RS03255 isocitrate lyase low > 107
Agrobacterium fabrum C58 0.20 Atu1464 glycine cleavage system T protein, aminomethyltransferase 0.57 Atu0607 isocitrate lyase low > 89
Acidovorax sp. GW101-3H11 0.20 Ac3H11_165 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.72 Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) (from data) low > 79
Azospirillum brasilense Sp245 0.20 AZOBR_RS10470 aminomethyltransferase 0.56 AZOBR_RS02405 isocitrate lyase low > 97
Variovorax sp. SCN45 0.19 GFF6476 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.72 GFF4829 Isocitrate lyase (EC 4.1.3.1) low > 127

Not shown: 22 genomes with orthologs for HER17_RS18005 only; 3 genomes with orthologs for HER17_RS02295 only