| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sphingomonas koreensis DSMZ 15582 | 1.0 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | 1.0 | Ga0059261_1638 | | transcriptional regulator, GntR family | 0.32 | 13 |
| Bosea sp. OAE506 | 0.51 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | 0.17 | ABIE41_RS24190 | | GntR family transcriptional regulator | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.51 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.13 | Dshi_0694 | | transcriptional regulator, GntR family (RefSeq) | low | > 64 |
| Azospirillum brasilense Sp245 | 0.50 | AZOBR_RS01870 | | alanine racemase | 0.18 | AZOBR_RS15620 | | GntR family transcriptional regulator | — | — |
| Agrobacterium fabrum C58 | 0.49 | Atu2747 | | hypothetical protein | 0.42 | Atu2606 | | transcriptional regulator, GntR family | low | > 89 |
| Azospirillum sp. SherDot2 | 0.49 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.48 | MPMX19_03609 | | HTH-type transcriptional repressor NagR | low | > 112 |
| Rhizobium sp. OAE497 | 0.48 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | 0.41 | ABIE40_RS12115 | | GntR family transcriptional regulator | — | — |
| Sinorhizobium meliloti 1021 | 0.48 | SMc02812 | | hypothetical protein | 0.43 | SMc02876 | | transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS02580 | | YggS family pyridoxal phosphate-dependent enzyme | 0.20 | RPSI07_RS00285 | | GntR family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS20285 | | YggS family pyridoxal phosphate-dependent enzyme | 0.20 | RALBFv3_RS22955 | | GntR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS18890 | | YggS family pyridoxal phosphate-dependent enzyme | 0.20 | UW163_RS23575 | | GntR family transcriptional regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS20395 | | YggS family pyridoxal phosphate-dependent enzyme | 0.20 | RS_RS17570 | | GntR family transcriptional regulator | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c33360 | | putative alanine racemase | 0.40 | PGA1_c27900 | | ligand-binding UTRA domain-containing protein | low | > 62 |
| Caulobacter crescentus NA1000 | 0.41 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.65 | CCNA_00454 | | GntR-family transcriptional regulator | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.41 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.65 | CCNA_00454 | | GntR-family transcriptional regulator | low | > 67 |
| Enterobacter asburiae PDN3 | 0.33 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.27 | EX28DRAFT_0470 | | Transcriptional regulators | low | > 76 |
| Escherichia fergusonii Becca | 0.32 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.26 | EFB2_01756 | | HTH-type transcriptional repressor NagR | low | > 86 |
| Escherichia coli BW25113 | 0.32 | b2951 | yggS | predicted enzyme (NCBI) | 0.26 | b2101 | yegW | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.32 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | BNILDI_14340 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.32 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.26 | OHPLBJKB_01609 | | HTH-type transcriptional repressor YvoA | low | > 73 |
| Escherichia coli BL21 | 0.32 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.26 | ECD_02029 | | putative DNA-binding transcriptional regulator | — | — |
| Escherichia coli Nissle 1917 | 0.32 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.26 | ECOLIN_RS12325 | | GntR family transcriptional regulator | — | — |
| Escherichia coli ECRC98 | 0.32 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | JDDGAC_28195 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | low | > 86 |
| Escherichia coli ECOR27 | 0.32 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | NOLOHH_15425 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | low | > 75 |
| Escherichia coli ECRC101 | 0.32 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | MCAODC_21075 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | low | > 87 |
| Escherichia coli ECRC100 | 0.32 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | OKFHMN_24085 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | low | > 80 |
| Escherichia coli ECOR38 | 0.32 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | HEPCGN_02770 | mngR | GntR family transcriptional regulator | low | > 87 |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | NIAGMN_22030 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Escherichia coli ECRC99 | 0.31 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | KEDOAH_04065 | yegW | Uncharacterized HTH-type transcriptional regulator YegW | — | — |
| Lysobacter sp. OAE881 | 0.31 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | 0.49 | ABIE51_RS01625 | | GntR family transcriptional regulator | low | > 62 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.27 | GFF3835 | | Uncharacterized HTH-type transcriptional regulator YegW | low | > 78 |
| Klebsiella michiganensis M5al | 0.30 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.16 | BWI76_RS01040 | | transcriptional regulator | 0.30 | 46 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.37 | Xcc-8004.953.1 | | Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.17 | Psyr_3135 | | transcriptional regulator, GntR family | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.17 | Psyr_3135 | | transcriptional regulator, GntR family | low | > 86 |
| Enterobacter sp. TBS_079 | 0.29 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.27 | MPMX20_03075 | | HTH-type transcriptional repressor NagR | low | > 85 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS03495 | | hypothetical protein | 0.39 | BPHYT_RS02725 | | GntR family transcriptional regulator | low | > 109 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.25 | HER17_RS16070 | | GntR family transcriptional regulator | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.17 | MIT1002_03830 | | HTH-type transcriptional repressor YvoA | low | > 70 |
| Pseudomonas sp. S08-1 | 0.28 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | 0.20 | OH686_23055 | | Putative alkanesulfonate metabolism utilization regulator | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.28 | H281DRAFT_04680 | | hypothetical protein | 0.39 | H281DRAFT_01980 | | transcriptional regulator, GntR family | low | > 103 |
| Rahnella sp. WP5 | 0.28 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.23 | EX31_RS13550 | | GntR family transcriptional regulator | low | > 89 |
| Ralstonia sp. UNC404CL21Col | 0.28 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | 0.20 | ABZR87_RS18335 | | GntR family transcriptional regulator | low | > 80 |
| Rhodanobacter denitrificans FW104-10B01 | 0.28 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | LRK54_RS07865 | | GntR family transcriptional regulator | low | > 59 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.17 | Ac3H11_3155 | | Putative alkanesulfonate metabolism utilization regulator | low | > 79 |
| Pseudomonas putida KT2440 | 0.27 | PP_5094 | | putative enzyme with PLP binding domain | 0.21 | PP_0204 | | Transcriptional regulator, GntR family | low | > 96 |
| Variovorax sp. SCN45 | 0.27 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | 0.18 | GFF4945 | | probable GntR-family transcriptional regulator | — | — |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | LRK55_RS07595 | | GntR family transcriptional regulator | low | > 63 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.18 | GFF3371 | | Putative alkanesulfonate metabolism utilization regulator | low | > 90 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | 0.19 | ABID97_RS27715 | | GntR family transcriptional regulator | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | ABZR86_RS14705 | | GntR family transcriptional regulator | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.27 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.38 | QEN71_RS02910 | | GntR family transcriptional regulator | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.27 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | 0.39 | ABIE53_000688 | | GntR family transcriptional regulator | low | > 113 |
| Desulfovibrio vulgaris Miyazaki F | 0.27 | DvMF_2208 | | alanine racemase domain protein (RefSeq) | 0.22 | DvMF_0513 | | transcriptional regulator, GntR family (RefSeq) | low | > 51 |
| Dechlorosoma suillum PS | 0.26 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | 0.19 | Dsui_2210 | | transcriptional regulator | low | > 51 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.41 | PFR28_03511 | | HTH-type transcriptional repressor NagR | low | > 88 |
| Pseudomonas simiae WCS417 | 0.26 | PS417_26725 | | hypothetical protein | 0.37 | PS417_22980 | | GntR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_13425 | | hypothetical protein | 0.40 | AO356_17555 | | GntR family transcriptional regulator | low | > 104 |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS18995 | | hypothetical protein | 0.19 | HSERO_RS22990 | | transcriptional regulator | low | > 78 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.40 | PFLU_RS24640 | | GntR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.41 | PfGW456L13_4829 | | Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.40 | PFLU_RS24640 | | GntR family transcriptional regulator | low | > 109 |
| Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | 0.46 | OKGIIK_14355 | mngR | GntR family transcriptional regulator | low | > 52 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.25 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | 0.17 | BT2103 | | transcriptional regulator (NCBI ptt file) | low | > 81 |
| Bacteroides ovatus ATCC 8483 | 0.25 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | 0.16 | BACOVA_03251 | | UbiC transcription regulator-associated domain protein | low | > 94 |
| Pseudomonas fluorescens FW300-N2E3 | 0.25 | AO353_10505 | | hypothetical protein | 0.40 | AO353_04445 | | GntR family transcriptional regulator | low | > 101 |
| Castellaniella sp019104865 MT123 | 0.24 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.17 | ABCV34_RS01680 | | GntR family transcriptional regulator | low | > 48 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | 0.13 | Echvi_0410 | | Transcriptional regulators | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS17355 | | hypothetical protein | 0.21 | RR42_RS29705 | | hypothetical protein | low | > 128 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.23 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | 0.19 | CA265_RS01265 | | GntR family transcriptional regulator | low | > 88 |
| Mycobacterium tuberculosis H37Rv | 0.22 | Rv2148c | | Conserved protein | 0.15 | Rv0792c | | Probable transcriptional regulatory protein (probably GntR-family) | low | > 58 |
| Bifidobacterium breve UCC2003 | 0.19 | BBR_RS11570 | | YggS family pyridoxal phosphate-dependent enzyme | 0.13 | BBR_RS20315 | | GntR family transcriptional regulator | low | > 34 |
Not shown: 30 genomes with orthologs for Ga0059261_2216 only; 0 genomes with orthologs for Ga0059261_1638 only