| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF4142 | | transcriptional regulator, Crp/Fnr family | 1.0 | GFF4626 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | 0.37 | 19 |
| Acidovorax sp. GW101-3H11 | 0.81 | Ac3H11_975 | | transcriptional regulator, Crp/Fnr family | 0.81 | Ac3H11_2027 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | — | — |
| Dechlorosoma suillum PS | 0.68 | Dsui_1646 | | cAMP-binding protein | 0.67 | Dsui_0422 | | thiamine biosynthesis protein ThiC | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_23940 | | Crp/Fnr family transcriptional regulator | 0.67 | AO356_08810 | | thiamine biosynthesis protein ThiC | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_1516 | | transcriptional regulator, Crp/Fnr family | 0.67 | Pf6N2E2_3644 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | low | > 103 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_02314 | | Fumarate and nitrate reduction regulatory protein | 0.67 | PFR28_05091 | | Phosphomethylpyrimidine synthase | low | > 88 |
| Pseudomonas simiae WCS417 | 0.54 | PS417_15825 | | Crp/Fnr family transcriptional regulator | 0.67 | PS417_02355 | | thiamine biosynthesis protein ThiC | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_19870 | | Crp/Fnr family transcriptional regulator | 0.66 | AO353_13010 | | thiamine biosynthesis protein ThiC | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_4177 | | transcriptional regulator, Crp/Fnr family | 0.67 | Pf1N1B4_1447 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | low | > 87 |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS11180 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.63 | ABZR87_RS04785 | | phosphomethylpyrimidine synthase ThiC | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS36970 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.68 | QEN71_RS05480 | | phosphomethylpyrimidine synthase ThiC | low | > 153 |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS13110 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.63 | UW163_RS03640 | | phosphomethylpyrimidine synthase ThiC | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS15650 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.63 | RALBFv3_RS09940 | | phosphomethylpyrimidine synthase ThiC | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.52 | RPSI07_RS17705 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.63 | RPSI07_RS23420 | | phosphomethylpyrimidine synthase ThiC | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS06430 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.62 | RS_RS00555 | | phosphomethylpyrimidine synthase | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_01640 | | transcriptional regulator, Crp/Fnr family | 0.67 | H281DRAFT_00395 | | hydroxymethylpyrimidine synthase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS31300 | | Crp/Fnr family transcriptional regulator | 0.67 | BPHYT_RS13220 | | phosphomethylpyrimidine synthase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.48 | ABIE53_004332 | | CRP/FNR family transcriptional regulator | 0.67 | ABIE53_002857 | | phosphomethylpyrimidine synthase | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS12690 | | transcriptional regulator | 0.68 | HSERO_RS02120 | | phosphomethylpyrimidine synthase ThiC | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS06835 | | helix-turn-helix domain-containing protein | 0.69 | ABCV34_RS10825 | | phosphomethylpyrimidine synthase ThiC | low | > 48 |
| Pseudomonas putida KT2440 | 0.45 | PP_3287 | | transcriptional regulator with 4Fe-4S cluster; Crp/Fnr family | 0.67 | PP_4922 | | Phosphomethylpyrimidine synthase | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.67 | PFLU_RS02430 | | phosphomethylpyrimidine synthase ThiC | low | > 109 |
| Shewanella amazonensis SB2B | 0.41 | Sama_1799 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.63 | Sama_1860 | | thiamine biosynthesis protein ThiC (RefSeq) | low | > 62 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS10900 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.63 | HGI48_RS01170 | | phosphomethylpyrimidine synthase ThiC | low | > 71 |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_02035 | | Fumarate and nitrate reduction regulatory protein | 0.64 | MPMX20_00217 | | Phosphomethylpyrimidine synthase | low | > 85 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS11360 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.63 | DZA65_RS01215 | | phosphomethylpyrimidine synthase ThiC | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.67 | PFLU_RS02430 | | phosphomethylpyrimidine synthase ThiC | low | > 109 |
| Shewanella loihica PV-4 | 0.41 | Shew_1993 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.63 | Shew_2096 | | thiamine biosynthesis protein ThiC (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.41 | MIT1002_02137 | | Fumarate and nitrate reduction regulatory protein | 0.64 | MIT1002_00097 | | Phosphomethylpyrimidine synthase | 0.76 | 50 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS10525 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.63 | HER17_RS20380 | | phosphomethylpyrimidine synthase ThiC | low | > 75 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_13260 | | FNR family transcription factor | 0.63 | IAI46_01320 | | phosphomethylpyrimidine synthase ThiC | low | > 86 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS10950 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.64 | DDA3937_RS01175 | | phosphomethylpyrimidine synthase ThiC | low | > 74 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_02245 | | Fumarate and nitrate reduction regulatory protein | 0.67 | OH686_15885 | | phosphomethylpyrimidine synthase | low | > 80 |
| Rahnella sp. WP5 | 0.41 | EX31_RS07200 | | FNR family transcription factor | 0.64 | EX31_RS16815 | | phosphomethylpyrimidine synthase ThiC | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_2538 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.67 | Psest_0477 | | thiamine biosynthesis protein ThiC | low | > 67 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_2115 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | 0.62 | Shewana3_1936 | | thiamine biosynthesis protein ThiC (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.40 | SO2356 | etrA | electron transport regulator a (NCBI ptt file) | 0.62 | SO2445 | thiC | thiamin biosynthesis protein ThiC (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_4071 | | Fumarate and nitrate reduction regulatory protein | 0.67 | PfGW456L13_187 | | Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) | low | > 87 |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_07190 | | transcriptional regulator FNR | 0.62 | CSW01_00335 | | phosphomethylpyrimidine synthase | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.40 | LU632_RS11420 | | FNR family transcription factor | 0.64 | LU632_RS00970 | thiC | phosphomethylpyrimidine synthase ThiC | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | 0.66 | Psyr_0544 | | hydroxymethylpyrimidine synthase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | 0.66 | Psyr_0544 | | hydroxymethylpyrimidine synthase | low | > 86 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_634 | | transcriptional regulator, Crp/Fnr family | 0.67 | HP15_453 | | thiamine biosynthesis protein thiC | low | > 73 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS03805 | | fumarate/nitrate reduction transcriptional regulator Fnr | 0.66 | ABIE51_RS17515 | | phosphomethylpyrimidine synthase ThiC | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_1982 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.71 | B158DRAFT_0295 | | hydroxymethylpyrimidine synthase | low | > 40 |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_00820 | | CRP-like protein Clp | 0.67 | OKGIIK_16965 | thiC | phosphomethylpyrimidine synthase ThiC | low | > 52 |
| Variovorax sp. SCN45 | 0.29 | GFF6947 | | transcriptional regulator, Crp/Fnr family | 0.83 | GFF2000 | | Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS04345 | | cyclic nucleotide-binding domain-containing protein | 0.67 | ABZR86_RS17230 | | phosphomethylpyrimidine synthase ThiC | low | > 74 |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS01145 | | Crp/Fnr family transcriptional regulator | 0.66 | AZOBR_RS07940 | | phosphomethylpyrimidine synthase | low | > 97 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.24 | Xcc-8004.2952.1 | | transcriptional regulator, Crp/Fnr family | 0.65 | Xcc-8004.1066.1 | | hypothetical protein | low | > 74 |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A3322 | | Transcriptional Regulator, Crp/Fnr family (NCBI) | 0.60 | Rru_A2008 | | Thiamine biosynthesis protein ThiC (NCBI) | low | > 58 |
| Magnetospirillum magneticum AMB-1 | 0.21 | AMB_RS22105 | | transcriptional regulator | 0.63 | AMB_RS01125 | | phosphomethylpyrimidine synthase | — | — |
| Agrobacterium fabrum C58 | 0.19 | Atu1602 | | transcriptional activator, Crp family | 0.64 | Atu2569 | | thiamine biosynthesis protein | low | > 89 |
| Caulobacter crescentus NA1000 Δfur | 0.17 | CCNA_00789 | | hypoxia transcriptional regulator FixK | 0.65 | CCNA_02109 | | thiamine biosynthesis protein thiC | low | > 67 |
| Caulobacter crescentus NA1000 | 0.17 | CCNA_00789 | | hypoxia transcriptional regulator FixK | 0.65 | CCNA_02109 | | thiamine biosynthesis protein thiC | 0.85 | 9 |
| Sinorhizobium meliloti 1021 | 0.16 | SMa1225 | | transcriptional regulator FixK | 0.64 | SM_b20615 | | thiamine biosynthesis protein ThiC | — | — |
| Rhodopseudomonas palustris CGA009 | 0.16 | TX73_022020 | | helix-turn-helix domain-containing protein | 0.63 | TX73_018540 | | phosphomethylpyrimidine synthase ThiC | — | — |
| Bosea sp. OAE506 | 0.16 | ABIE41_RS04120 | | Crp/Fnr family transcriptional regulator | 0.63 | ABIE41_RS02770 | | phosphomethylpyrimidine synthase ThiC | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.15 | Dshi_0660 | | transcriptional regulator, Crp/Fnr family (RefSeq) | 0.64 | Dshi_4080 | | thiamine biosynthesis protein ThiC (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.15 | Ga0059261_1530 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | 0.64 | Ga0059261_2424 | | hydroxymethylpyrimidine synthase | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.12 | A4249_RS05295 | | Crp/Fnr family transcriptional regulator | 0.64 | A4249_RS15715 | | phosphomethylpyrimidine synthase ThiC | low | > 48 |
Not shown: 22 genomes with orthologs for GFF4142 only; 12 genomes with orthologs for GFF4626 only