| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 1.0 | HP15_3957 | | endoribonuclease L-PSP family protein | 0.71 | 7 |
| Shewanella amazonensis SB2B | 0.49 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.66 | Sama_3317 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.48 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.64 | SO0337 | | hypothetical translation initiation inhibitor, yjgF family (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.48 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.64 | Shewana3_3834 | | endoribonuclease L-PSP (RefSeq) | low | > 73 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.53 | PfGW456L13_813 | | Translation initiation inhibitor | low | > 87 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | DDA3937_RS11245 | | RidA family protein | low | > 74 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_08050 | | 16S rRNA methyltransferase | 0.53 | AO353_09150 | | cytochrome C2 | low | > 101 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.41 | GFF2824 | | RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein | low | > 78 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.46 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.42 | OHPLBJKB_01924 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 73 |
| Escherichia fergusonii Becca | 0.46 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 0.42 | EFB2_02191 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Escherichia coli ECRC99 | 0.46 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | KEDOAH_01535 | yoaB | RutC family protein YoaB | — | — |
| Escherichia coli ECOR38 | 0.46 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 0.42 | HEPCGN_04965 | yoaB | RutC family protein YoaB | low | > 87 |
| Escherichia coli ECRC100 | 0.46 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | OKFHMN_26575 | yoaB | RutC family protein YoaB | 0.55 | 27 |
| Escherichia coli ECRC98 | 0.46 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | JDDGAC_01150 | yoaB | RutC family protein YoaB | low | > 86 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | ECOLIN_RS10060 | | RidA family protein | — | — |
| Escherichia coli BL21 | 0.46 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 0.42 | ECD_01779 | | putative reactive intermediate deaminase | low | > 61 |
| Escherichia coli BW25113 | 0.46 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 0.42 | b1809 | b1809 | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli ECRC101 | 0.46 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | MCAODC_18835 | yoaB | RutC family protein YoaB | low | > 87 |
| Escherichia coli ECRC62 | 0.46 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | BNILDI_15880 | yoaB | RutC family protein YoaB | 0.51 | 73 |
| Escherichia coli ECOR27 | 0.46 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | NOLOHH_17095 | yoaB | RutC family protein YoaB | low | > 75 |
| Escherichia coli ECRC102 | 0.46 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | NIAGMN_01490 | yoaB | RutC family protein YoaB | — | — |
| Pseudomonas sp. RS175 | 0.46 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.54 | PFR28_04398 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
| Pantoea sp. MT58 | 0.46 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | IAI47_08805 | | RidA family protein | low | > 76 |
| Rahnella sp. WP5 | 0.46 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | EX31_RS10620 | | RidA family protein | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.46 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.46 | CSW01_07820 | | RidA family protein | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.54 | Pf6N2E2_4392 | | Translation initiation inhibitor | low | > 103 |
| Serratia liquefaciens MT49 | 0.46 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | IAI46_14555 | | RidA family protein | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_13565 | | 16S rRNA methyltransferase | 0.53 | AO356_12625 | | cytochrome C2 | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.51 | Pf1N1B4_2145 | | Translation initiation inhibitor | — | — |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | LU632_RS13155 | | RidA family protein | low | > 74 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.43 | MPMX20_02715 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.42 | EX28DRAFT_0749 | | Putative translation initiation inhibitor, yjgF family | low | > 76 |
| Dickeya dianthicola 67-19 | 0.45 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.28 | HGI48_RS11280 | | RidA family protein | low | > 71 |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.54 | Psyr_0236 | | Endoribonuclease L-PSP | — | — |
| Dickeya dianthicola ME23 | 0.45 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | DZA65_RS11625 | | RidA family protein | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.54 | Psyr_0236 | | Endoribonuclease L-PSP | low | > 86 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.45 | BWI76_RS17820 | | hypothetical protein | low | > 92 |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.53 | PFLU_RS29375 | | RidA family protein | low | > 109 |
| Pseudomonas putida KT2440 | 0.44 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.56 | PP_4435 | | conserved protein of unknown function | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.53 | PFLU_RS29375 | | RidA family protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.44 | PS417_26545 | | 16S rRNA methyltransferase | 0.55 | PS417_27700 | | cytochrome C2 | — | — |
| Pseudomonas stutzeri RCH2 | 0.43 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.52 | Psest_2118 | | Putative translation initiation inhibitor, yjgF family | — | — |
| Pseudomonas sp. S08-1 | 0.43 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | OH686_13690 | | RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.38 | HER17_RS11295 | | RidA family protein | low | > 75 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.44 | MPMX26_00129 | | Putative aminoacrylate peracid reductase RutC | low | > 36 |
| Dechlorosoma suillum PS | 0.40 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.51 | Dsui_1999 | | putative translation initiation inhibitor, yjgF family | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.38 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.53 | LRK54_RS17060 | | RidA family protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.38 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.52 | LRK55_RS16775 | | RidA family protein | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.49 | Xcc-8004.3612.1 | | Putative translation initiation inhibitor, yjgF family | — | — |
| Ralstonia sp. UNC404CL21Col | 0.37 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | ABZR87_RS23140 | | RidA family protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.54 | H281DRAFT_01267 | | Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family | low | > 103 |
| Ralstonia solanacearum IBSBF1503 | 0.36 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | RALBFv3_RS16200 | | RidA family protein | — | — |
| Ralstonia solanacearum UW163 | 0.36 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.42 | UW163_RS16935 | | RidA family protein | — | — |
| Ralstonia solanacearum PSI07 | 0.36 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | RPSI07_RS07500 | | RidA family protein | — | — |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.52 | ABIE53_006269 | | enamine deaminase RidA (YjgF/YER057c/UK114 family) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.51 | HSERO_RS09850 | | aminoacrylate peracid reductase | — | — |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.53 | BPHYT_RS09365 | | cytochrome C2 | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.46 | RR42_RS29610 | | cytochrome C2 | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | RS_RS07925 | | RidA family protein | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.48 | QEN71_RS33240 | | RidA family protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.42 | GFF290 | | RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein | low | > 90 |
| Variovorax sp. SCN45 | 0.31 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.47 | GFF3101 | | RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.44 | ABCV34_RS09270 | | RidA family protein | low | > 48 |
| Azospirillum sp. SherDot2 | 0.23 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | 0.50 | MPMX19_01538 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.56 | PGA1_c26890 | | putative endoribonuclease | low | > 62 |
| Agrobacterium fabrum C58 | 0.21 | Atu0657 | | hypothetical protein | 0.40 | Atu2130 | | hypothetical protein | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.20 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | 0.56 | Dshi_3201 | | Endoribonuclease L-PSP (RefSeq) | low | > 64 |
| Rhizobium sp. OAE497 | 0.20 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | ABIE40_RS23120 | | RidA family protein | low | > 107 |
| Azospirillum brasilense Sp245 | 0.19 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.52 | AZOBR_RS27125 | | endoribonuclease | low | > 97 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.18 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | A4249_RS08755 | | RidA family protein | — | — |
| Sinorhizobium meliloti 1021 | 0.17 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | 0.51 | SMc00791 | | hypothetical protein | low | > 103 |
| Bosea sp. OAE506 | 0.16 | ABIE41_RS23100 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.43 | ABIE41_RS03830 | | RidA family protein | low | > 77 |
| Rhodospirillum rubrum S1H | 0.15 | Rru_A0571 | | hypothetical protein (NCBI) | 0.45 | Rru_A1174 | | Endoribonuclease L-PSP (NCBI) | low | > 58 |
Not shown: 28 genomes with orthologs for HP15_2926 only; 1 genomes with orthologs for HP15_3957 only