| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sphingobium sp. HT1-2 | 1.0 | GFF3503 | | two-component response regulator | 1.0 | GFF39 | | Replication-associated recombination protein RarA | 0.81 | 14 |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_1737 | | two component transcriptional regulator, LuxR family | 0.45 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 40 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS12850 | | LuxR family transcriptional regulator | 0.40 | HSERO_RS09515 | | ATPase AAA | low | > 78 |
| Magnetospirillum magneticum AMB-1 | 0.38 | AMB_RS06830 | | DNA-binding response regulator | 0.60 | AMB_RS17620 | | replication-associated recombination protein A | low | > 64 |
| Ralstonia sp. UNC404CL21Col | 0.37 | ABZR87_RS05230 | | response regulator transcription factor | 0.44 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.27 | 54 |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS09500 | | DNA-binding response regulator | 0.43 | RALBFv3_RS04145 | | replication-associated recombination protein A | low | > 76 |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS04080 | | DNA-binding response regulator | 0.43 | UW163_RS09525 | | replication-associated recombination protein A | — | — |
| Ralstonia solanacearum PSI07 | 0.37 | RPSI07_RS23850 | | DNA-binding response regulator | 0.44 | RPSI07_RS13205 | | replication-associated recombination protein A | low | > 81 |
| Vibrio cholerae E7946 ATCC 55056 | 0.37 | CSW01_06455 | | DNA-binding response regulator | 0.41 | CSW01_05630 | | replication-associated recombination protein A | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_0662 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.44 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 67 |
| Ralstonia solanacearum GMI1000 | 0.35 | RS_RS00100 | | DNA-binding response regulator | 0.42 | RS_RS11735 | | replication-associated recombination protein A | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.35 | Pf6N2E2_1296 | | DNA-binding response regulator, LuxR family | 0.45 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | low | > 103 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.35 | Echvi_1897 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.38 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | low | > 79 |
| Pseudomonas fluorescens FW300-N1B4 | 0.34 | Pf1N1B4_4833 | | DNA-binding response regulator, LuxR family | 0.45 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.34 | COO64_RS09150 | | response regulator transcription factor | 0.45 | COO64_RS24170 | | replication-associated recombination protein A | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.34 | AO353_24485 | | regulator | 0.46 | AO353_27640 | | recombination factor protein RarA | low | > 101 |
| Rhodanobacter denitrificans MT42 | 0.34 | LRK55_RS11330 | | response regulator transcription factor | 0.42 | LRK55_RS17545 | | replication-associated recombination protein A | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.34 | LRK54_RS11600 | | response regulator transcription factor | 0.42 | LRK54_RS17320 | | replication-associated recombination protein A | low | > 59 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS20525 | | LuxR family transcriptional regulator | 0.42 | RR42_RS04355 | | recombination factor protein RarA | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_03153 | | two component transcriptional regulator, LuxR family | 0.42 | H281DRAFT_00180 | | Recombination protein MgsA | low | > 103 |
| Rhodanobacter sp000427505 FW510-R12 | 0.32 | LRK53_RS16955 | | response regulator transcription factor | 0.42 | LRK53_RS11700 | | replication-associated recombination protein A | low | > 59 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_01618 | | Oxygen regulatory protein NreC | 0.46 | PFR28_02606 | | Replication-associated recombination protein A | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.32 | GEMAOFIL_04126 | | Transcriptional regulatory protein DegU | 0.45 | GEMAOFIL_03623 | | Replication-associated recombination protein A | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.32 | QF045_RS21775 | | response regulator transcription factor | 0.45 | QF045_RS18235 | | replication-associated recombination protein A | low | > 93 |
| Pseudomonas sp. BP01 | 0.32 | JOY50_RS24990 | | response regulator transcription factor | 0.46 | JOY50_RS06525 | | replication-associated recombination protein A | low | > 84 |
| Shewanella amazonensis SB2B | 0.32 | Sama_1873 | | response regulator receiver protein (RefSeq) | 0.43 | Sama_1774 | | recombination factor protein RarA (RefSeq) | low | > 62 |
| Pseudomonas sp. DMC3 | 0.32 | GFF4570 | | Transcriptional regulatory protein DegU | 0.45 | GFF1532 | | Replication-associated recombination protein A | low | > 89 |
| Desulfovibrio vulgaris Miyazaki F | 0.31 | DvMF_1021 | | two component transcriptional regulator, LuxR family (RefSeq) | 0.33 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | low | > 51 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_25670 | | regulator | 0.45 | AO356_22185 | | recombination factor protein RarA | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.31 | PFLU_RS21600 | | response regulator transcription factor | 0.45 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF3581 | | Secretion system regulator of DegU/UvrY/BvgA type | 0.41 | GFF4896 | | FIG065221: Holliday junction DNA helicase | low | > 78 |
| Pseudomonas simiae WCS417 | 0.31 | PS417_19630 | | LuxR family transcriptional regulator | 0.45 | PS417_16480 | | recombination factor protein RarA | low | > 88 |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS22230 | | LuxR family transcriptional regulator | 0.43 | BPHYT_RS05100 | | ATPase AAA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.31 | PFLU_RS21600 | | response regulator transcription factor | 0.45 | PFLU_RS18520 | | replication-associated recombination protein A | low | > 109 |
| Pseudomonas putida KT2440 | 0.31 | PP_2126 | | DNA-binding response regulator, LuxR family | 0.45 | PP_4002 | | DNA-dependent ATPase required for recombination | low | > 96 |
| Dinoroseobacter shibae DFL-12 | 0.31 | Dshi_2345 | | two component transcriptional regulator, LuxR family (RefSeq) | 0.57 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | low | > 64 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.31 | DVU2577 | | DNA-binding response regulator, LuxR family (TIGR) | 0.32 | DVU1686 | | ATPase, AAA family (TIGR) | low | > 55 |
| Dechlorosoma suillum PS | 0.30 | Dsui_1862 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.42 | Dsui_1694 | | AAA ATPase | low | > 51 |
| Cellulophaga baltica 18 | 0.30 | M666_RS04555 | | response regulator transcription factor | 0.38 | M666_RS01075 | | replication-associated recombination protein A | low | > 67 |
| Pseudomonas sp. S08-1 | 0.30 | OH686_21830 | | Two-component transcriptional response regulator, NarL/FixJ family | 0.45 | OH686_00270 | | Replication-associated recombination protein RarA | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2277 | | DNA-binding response regulator, LuxR family | 0.45 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | low | > 87 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_03526 | | Nitrogen regulation protein C | 0.42 | MIT1002_02178 | | Replication-associated recombination protein A | low | > 70 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_000448 | | two-component system invasion response regulator UvrY | 0.44 | ABIE53_001292 | | putative ATPase | low | > 113 |
| Phaeobacter inhibens DSM 17395 | 0.29 | PGA1_c20200 | | two-component signal transduction system, response regulator | 0.56 | PGA1_c01930 | | replication-associated recombination protein A | low | > 62 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | 0.45 | Psyr_3177 | | Recombination protein MgsA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | 0.45 | Psyr_3177 | | Recombination protein MgsA | — | — |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS10030 | | response regulator transcription factor | 0.41 | HER17_RS12345 | | replication-associated recombination protein A | low | > 75 |
| Lysobacter sp. OAE881 | 0.29 | ABIE51_RS16750 | | response regulator transcription factor | 0.39 | ABIE51_RS11445 | | replication-associated recombination protein A | low | > 62 |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS11645 | | response regulator transcription factor | 0.42 | DDA3937_RS09605 | | replication-associated recombination protein A | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.28 | CA265_RS12275 | | hypothetical protein | 0.37 | CA265_RS22400 | | AAA family ATPase | low | > 88 |
| Rhodopseudomonas palustris CGA009 | 0.28 | TX73_007655 | | response regulator transcription factor | 0.61 | TX73_016655 | | replication-associated recombination protein A | low | > 86 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF3272 | | DNA-binding response regulator, LuxR family | 0.37 | GFF777 | | FIG065221: Holliday junction DNA helicase | low | > 90 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.27 | CA264_09180 | | DNA-binding response regulator | 0.40 | CA264_02215 | | AAA family ATPase | low | > 74 |
| Pseudomonas segetis P6 | 0.27 | MPMX49_03691 | | Virulence factors putative positive transcription regulator BvgA | 0.45 | MPMX49_02534 | | Replication-associated recombination protein A | low | > 75 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS22515 | | response regulator transcription factor | 0.44 | ABID97_RS07835 | | replication-associated recombination protein A | 0.28 | 19 |
| Escherichia coli BW25113 | 0.27 | b1914 | uvrY | response regulator (NCBI) | 0.41 | b0892 | ycaJ | recombination protein (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.27 | KEDOAH_02270 | uvrC | excinuclease ABC subunit UvrC | 0.41 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECOR27 | 0.27 | NOLOHH_16440 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.41 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | low | > 76 |
| Escherichia coli ECRC100 | 0.27 | OKFHMN_25820 | uvrC | excinuclease ABC subunit UvrC | 0.41 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | low | > 79 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.27 | OHPLBJKB_01815 | | Response regulator UvrY | 0.41 | OHPLBJKB_02776 | | Replication-associated recombination protein A | low | > 74 |
| Escherichia coli ECRC62 | 0.27 | BNILDI_15230 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.41 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | low | > 75 |
| Agrobacterium fabrum C58 | 0.27 | Atu5267 | | two component response regulator | 0.61 | Atu1914 | | ATPase, AAA family protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS05670 | | response regulator transcription factor | 0.42 | ABZR86_RS01825 | | replication-associated recombination protein A | low | > 74 |
| Escherichia fergusonii Becca | 0.27 | EFB2_02032 | | Response regulator UvrY | 0.41 | EFB2_03169 | | Replication-associated recombination protein A | low | > 86 |
| Escherichia coli ECRC98 | 0.27 | JDDGAC_00410 | uvrC | excinuclease ABC subunit UvrC | 0.41 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | low | > 87 |
| Escherichia coli ECRC101 | 0.27 | MCAODC_19570 | uvrC | excinuclease ABC subunit UvrC | 0.41 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | low | > 87 |
| Escherichia coli ECOR38 | 0.27 | HEPCGN_04175 | uvrC | excinuclease ABC subunit UvrC | 0.41 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | low | > 88 |
| Escherichia coli Nissle 1917 | 0.27 | ECOLIN_RS10900 | | UvrY/SirA/GacA family response regulator transcription factor | 0.41 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | — | — |
| Escherichia coli ECRC102 | 0.27 | NIAGMN_02230 | uvrC | excinuclease ABC subunit UvrC | 0.41 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | low | > 80 |
| Dickeya dianthicola 67-19 | 0.26 | HGI48_RS11705 | | response regulator | 0.42 | HGI48_RS09620 | | replication-associated recombination protein A | low | > 71 |
| Erwinia tracheiphila SCR3 | 0.26 | LU632_RS03195 | | response regulator transcription factor | 0.40 | LU632_RS09755 | | replication-associated recombination protein A | low | > 73 |
| Dickeya dianthicola ME23 | 0.26 | DZA65_RS12190 | | response regulator transcription factor | 0.42 | DZA65_RS09930 | | replication-associated recombination protein A | low | > 75 |
| Variovorax sp. SCN45 | 0.26 | GFF5818 | | Two-component transcriptional response regulator, NarL/FixJ family | 0.45 | GFF6034 | | Replication-associated recombination protein RarA | low | > 127 |
| Erwinia tracheiphila HP pepo 2.2 | 0.26 | IJEDHG_05655 | citB | DNA-binding response regulator | 0.41 | IJEDHG_20230 | | Replication-associated recombination protein A | low | > 61 |
| Klebsiella pneumoniae MKP103 | 0.26 | KDGMDA_25600 | | UvrY/SirA/GacA family response regulator transcription factor | 0.42 | KDGMDA_17905 | | replication-associated recombination protein RarA | low | > 95 |
| Marinobacter adhaerens HP15 | 0.25 | HP15_3166 | | two component transcriptional regulator, LuxR family | 0.41 | HP15_1817 | | recombination factor protein RarA | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_07345 | citB | DNA-binding response regulator | 0.42 | OKGIIK_07580 | rarA | recombination factor protein RarA | low | > 53 |
| Xanthobacter sp. DMC5 | 0.24 | GFF464 | | Response regulator UvrY | 0.61 | GFF1351 | | Replication-associated recombination protein A | — | — |
| Azospirillum sp. SherDot2 | 0.24 | MPMX19_03688 | | Response regulator UvrY | 0.63 | MPMX19_01528 | | Replication-associated recombination protein A | low | > 112 |
| Azospirillum brasilense Sp245 | 0.23 | AZOBR_RS27860 | | regulator | 0.63 | AZOBR_RS06885 | | ATPase AAA | low | > 97 |
| Bifidobacterium breve UCC2003 | 0.21 | BBR_RS15990 | | DNA-binding response regulator | 0.31 | BBR_RS17330 | | replication-associated recombination protein A | low | > 34 |
| Bacteroides stercoris CC31F | 0.19 | HMPREF1181_RS04510 | | response regulator transcription factor | 0.39 | HMPREF1181_RS16975 | | replication-associated recombination protein A | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_05544 | | transcriptional regulator, LuxR family | 0.40 | BACOVA_03971 | | ATPase, AAA family | low | > 96 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT0156 | | transcriptional regulator (NCBI ptt file) | 0.38 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | low | > 81 |
Not shown: 0 genomes with orthologs for GFF3503 only; 35 genomes with orthologs for GFF39 only