Conservation of cofitness between PS417_19695 and PS417_19885 in Pseudomonas simiae WCS417

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_19695 flagellar biosynthesis sigma factor 1.0 PS417_19885 flagellar basal body rod protein FlgG 0.95 15
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS21660 RNA polymerase sigma factor FliA 1.00 PFLU_RS21855 flagellar basal-body rod protein FlgG 0.98 3
Pseudomonas fluorescens SBW25 0.99 PFLU_RS21660 RNA polymerase sigma factor FliA 1.00 PFLU_RS21855 flagellar basal-body rod protein FlgG 0.97 6
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_18785 flagellar biosynthesis sigma factor 0.91 AO353_18600 flagellar basal-body rod protein FlgG 0.68 37
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon 0.94 Pf1N1B4_3569 Flagellar basal-body rod protein FlgG — —
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon 0.94 PfGW456L13_4386 Flagellar basal-body rod protein FlgG low > 87
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_03730 flagellar biosynthesis sigma factor 0.94 AO356_03925 flagellar basal-body rod protein FlgG 0.85 30
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon 0.94 Pf6N2E2_2627 Flagellar basal-body rod protein FlgG 0.91 17
Pseudomonas sp. RS175 0.95 PFR28_00852 RNA polymerase sigma factor FliA 0.93 PFR28_00805 Flagellar basal-body rod protein FlgG 0.88 20
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.85 Psyr_3475 Flagellar basal body rod protein:Protein of unknown function DUF1078 — —
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.85 Psyr_3475 Flagellar basal body rod protein:Protein of unknown function DUF1078 0.74 24
Pseudomonas putida KT2440 0.91 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons 0.90 PP_4385 flagellar basal-body rod protein FlgG 0.89 14
Pseudomonas sp. S08-1 0.84 OH686_02730 RNA polymerase sigma factor for flagellar operon 0.86 OH686_02950 flagellar basal-body rod protein FlgG 0.89 9
Pseudomonas stutzeri RCH2 0.82 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family 0.86 Psest_2963 flagellar basal-body rod protein FlgG, Gram-negative bacteria 0.89 13
Marinobacter adhaerens HP15 0.58 HP15_2302 flagellar biosynthesis sigma factor FliA 0.66 HP15_1472 flagellar basal-body rod protein FlgG 0.89 7
Alteromonas macleodii MIT1002 0.56 MIT1002_01103 Sigma-F factor 0.53 MIT1002_01046 Distal rod protein low > 70
Shewanella amazonensis SB2B 0.54 Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) 0.55 Sama_2313 flgG flagellar basal body rod protein FlgG (RefSeq) 0.99 4
Shewanella loihica PV-4 0.52 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) 0.56 Shew_1350 flgG flagellar basal body rod protein FlgG (RefSeq) 0.90 41
Shewanella sp. ANA-3 0.52 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) 0.55 Shewana3_1326 flgG flagellar basal body rod protein FlgG (RefSeq) 0.92 11
Shewanella oneidensis MR-1 0.52 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) 0.55 SO3244 flgG flagellar basal-body rod protein FlgG (NCBI ptt file) 0.86 11
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_02830 fliA RNA polymerase sigma factor FliA 0.66 OKGIIK_02675 flgG flagellar basal-body rod protein FlgG low > 52
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS13580 RNA polymerase sigma factor FliA 0.66 LRK54_RS13430 flagellar basal-body rod protein FlgG 0.62 10
Rhodanobacter denitrificans MT42 0.52 LRK55_RS13320 RNA polymerase sigma factor FliA 0.66 LRK55_RS13170 flagellar basal-body rod protein FlgG low > 63
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_10335 RNA polymerase sigma factor FliA 0.60 CSW01_11200 flagellar basal-body rod protein FlgG 0.83 34
Lysobacter sp. OAE881 0.50 ABIE51_RS16865 RNA polymerase sigma factor FliA 0.58 ABIE51_RS16695 flagellar basal-body rod protein FlgG 0.94 3
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS20265 RNA polymerase sigma factor FliA 0.67 ABZR86_RS20100 flagellar basal-body rod protein FlgG low > 74
Dechlorosoma suillum PS 0.46 Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family 0.62 Dsui_1737 flagellar basal-body rod protein FlgG low > 51
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS28940 RNA polymerase sigma factor FliA 0.60 QEN71_RS28895 flagellar basal-body rod protein FlgG 0.94 7
Paraburkholderia graminis OAS925 0.46 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA 0.61 ABIE53_000096 flagellar basal-body rod protein FlgG 0.99 2
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS18925 RNA polymerase sigma70 0.60 BPHYT_RS18870 flagellar basal body rod protein FlgG 0.92 6
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.61 H281DRAFT_05767 flagellar basal-body rod protein FlgG 0.64 15
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS10160 flagellar biosynthesis sigma factor 0.61 HSERO_RS10205 flagellar basal body rod protein FlgG 0.94 2
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon 0.63 Xcc-8004.2784.1 Flagellar basal-body rod protein FlgG low > 74
Dickeya dianthicola 67-19 0.43 HGI48_RS13350 RNA polymerase sigma factor FliA 0.60 HGI48_RS13500 flagellar basal-body rod protein FlgG 0.82 19
Dickeya dianthicola ME23 0.43 DZA65_RS13835 RNA polymerase sigma factor FliA 0.60 DZA65_RS13985 flagellar basal-body rod protein FlgG 0.98 19
Dickeya dadantii 3937 0.43 DDA3937_RS13300 RNA polymerase sigma factor FliA 0.60 DDA3937_RS13455 flagellar basal-body rod protein FlgG 0.96 19
Erwinia tracheiphila SCR3 0.43 LU632_RS13785 RNA polymerase sigma factor FliA 0.57 LU632_RS10420 flgG flagellar basal-body rod protein FlgG low > 74
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS17485 RNA polymerase sigma factor FliA 0.59 RALBFv3_RS21715 flagellar basal-body rod protein FlgG low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS21665 RNA polymerase sigma factor FliA 0.59 UW163_RS17470 flagellar basal-body rod protein FlgG — —
Ralstonia solanacearum GMI1000 0.42 RS_RS23830 RNA polymerase sigma factor FliA 0.59 RS_RS18820 flagellar basal-body rod protein FlgG low > 80
Ralstonia solanacearum PSI07 0.42 RPSI07_RS06165 RNA polymerase sigma factor FliA 0.58 RPSI07_RS01415 flagellar basal-body rod protein FlgG low > 81
Escherichia coli ECRC99 0.42 KEDOAH_02310 fliA RNA polymerase sigma factor FliA 0.59 KEDOAH_24105 flgG flagellar basal-body rod protein FlgG — —
Escherichia coli ECRC101 0.42 OKFHMN_25780 fliA RNA polymerase sigma factor FliA 0.59 OKFHMN_03650 flgG flagellar basal-body rod protein FlgG — —
Escherichia coli ECRC98 0.42 JDDGAC_00370 fliA RNA polymerase sigma factor FliA 0.59 JDDGAC_07310 flgG flagellar basal-body rod protein FlgG — —
Escherichia coli ECOR27 0.42 NOLOHH_16400 fliA RNA polymerase sigma factor FliA 0.58 NOLOHH_21180 flgG flagellar basal-body rod protein FlgG 0.94 19
Escherichia coli BW25113 0.42 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) 0.59 b1078 flgG flagellar component of cell-distal portion of basal-body rod (NCBI) 0.49 4
Escherichia coli Nissle 1917 0.42 ECOLIN_RS10975 RNA polymerase sigma factor FliA 0.59 ECOLIN_RS06240 flagellar basal-body rod protein FlgG — —
Escherichia coli ECRC102 0.42 NIAGMN_02270 fliA RNA polymerase sigma factor FliA 0.59 NIAGMN_24180 flgG flagellar basal-body rod protein FlgG — —
Escherichia coli ECRC62 0.42 BNILDI_15190 fliA RNA polymerase sigma factor FliA 0.59 BNILDI_19340 flgG flagellar basal-body rod protein FlgG — —
Escherichia coli ECRC101 0.42 MCAODC_19610 fliA RNA polymerase sigma factor FliA 0.59 MCAODC_23010 flgG flagellar basal-body rod protein FlgG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_01807 RNA polymerase sigma factor FliA 0.59 OHPLBJKB_02587 Flagellar basal-body rod protein FlgG low > 73
Escherichia coli ECOR38 0.42 HEPCGN_04135 fliA RNA polymerase sigma factor FliA 0.59 HEPCGN_23840 flgG flagellar basal-body rod protein FlgG low > 85
Pantoea sp. MT58 0.42 IAI47_08160 RNA polymerase sigma factor FliA 0.55 IAI47_12140 flagellar basal-body rod protein FlgG 0.86 9
Escherichia fergusonii Becca 0.42 EFB2_02023 RNA polymerase sigma factor FliA 0.59 EFB2_02896 Flagellar basal-body rod protein FlgG low > 86
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor 0.58 RR42_RS35700 flagellar basal body rod protein FlgG low > 128
Rahnella sp. WP5 0.42 EX31_RS09450 RNA polymerase sigma factor FliA 0.60 EX31_RS11290 flagellar basal-body rod protein FlgG 0.60 35
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS18040 RNA polymerase sigma factor FliA 0.56 ABZR87_RS22265 flagellar basal-body rod protein FlgG 0.95 12
Serratia liquefaciens MT49 0.42 IAI46_15785 RNA polymerase sigma factor FliA 0.61 IAI46_15935 flagellar basal-body rod protein FlgG low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF1690 RNA polymerase sigma factor for flagellar operon 0.59 GFF3359 Flagellar basal-body rod protein FlgG 0.81 23
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family 0.58 EX28DRAFT_1854 flagellar basal-body rod protein FlgG, Gram-negative bacteria 0.73 14
Enterobacter sp. TBS_079 0.41 MPMX20_02847 RNA polymerase sigma factor FliA 0.58 MPMX20_01757 Flagellar basal-body rod protein FlgG 0.75 34
Pectobacterium carotovorum WPP14 0.41 HER17_RS08355 RNA polymerase sigma factor FliA 0.60 HER17_RS08190 flagellar basal-body rod protein FlgG 0.90 17
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1428 RNA polymerase sigma factor for flagellar operon 0.56 GFF1410 Flagellar basal-body rod protein FlgG 0.42 44
Variovorax sp. SCN45 0.39 GFF5774 RNA polymerase sigma factor for flagellar operon 0.58 GFF5720 Flagellar basal-body rod protein FlgG low > 127
Castellaniella sp019104865 MT123 0.36 ABCV34_RS05605 RNA polymerase sigma factor FliA 0.55 ABCV34_RS05745 flagellar basal-body rod protein FlgG 0.80 3
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) 0.45 DvMF_2518 flgG flagellar basal body rod protein FlgG (RefSeq) 0.67 51
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) 0.46 DVU0513 flgG flagellar basal-body rod protein FlgG (TIGR) 0.81 38
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family 0.50 Ga0059261_2094 flagellar basal-body rod protein FlgG, Gram-negative bacteria 0.83 6

Not shown: 1 genomes with orthologs for PS417_19695 only; 14 genomes with orthologs for PS417_19885 only