Conservation of cofitness between PS417_27585 and PS417_19675 in Pseudomonas simiae WCS417

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27585 diaminopimelate epimerase 1.0 PS417_19675 chemotaxis protein CheY 0.35 3
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29270 diaminopimelate epimerase 0.85 PFLU_RS21640 chemotaxis response regulator protein-glutamate methylesterase low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29270 diaminopimelate epimerase 0.85 PFLU_RS21640 chemotaxis response regulator protein-glutamate methylesterase — —
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_844 Diaminopimelate epimerase (EC 5.1.1.7) 0.85 PfGW456L13_4327 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 87
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2173 Diaminopimelate epimerase (EC 5.1.1.7) 0.84 Pf1N1B4_3630 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 87
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_09040 diaminopimelate epimerase 0.88 AO353_18805 chemotaxis protein CheY low > 101
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4418 Diaminopimelate epimerase (EC 5.1.1.7) 0.86 Pf6N2E2_2569 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) low > 103
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_12735 diaminopimelate epimerase 0.86 AO356_03710 chemotaxis protein CheY low > 104
Pseudomonas sp. RS175 0.88 PFR28_04376 Diaminopimelate epimerase 0.83 PFR28_00856 Protein-glutamate methylesterase/protein-glutamine glutaminase 1 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0183 diaminopimelate epimerase 0.49 Psyr_3433 Protein-glutamate methylesterase — —
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0183 diaminopimelate epimerase 0.49 Psyr_3433 Protein-glutamate methylesterase — —
Pseudomonas stutzeri RCH2 0.81 Psest_3765 diaminopimelate epimerase 0.80 Psest_1744 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain — —
Pseudomonas sp. S08-1 0.81 OH686_13795 diaminopimelate epimerase 0.80 OH686_02710 Chemotaxis response regulator protein-glutamate methylesterase CheB — —
Pseudomonas putida KT2440 0.81 PP_5228 diaminopimelate epimerase 0.84 PP_4337 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon — —
Marinobacter adhaerens HP15 0.64 HP15_248 diaminopimelate epimerase 0.58 HP15_2297 response regulator receiver modulated CheB methylesterase — —
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_00640 diaminopimelate epimerase 0.59 CSW01_10315 chemotaxis response regulator protein-glutamate methylesterase — —
Dechlorosoma suillum PS 0.59 Dsui_0649 diaminopimelate epimerase 0.32 Dsui_1432 chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain — —
Dickeya dianthicola ME23 0.58 DZA65_RS21100 diaminopimelate epimerase 0.30 DZA65_RS14055 chemotaxis response regulator protein-glutamate methylesterase — —
Dickeya dianthicola 67-19 0.58 HGI48_RS20055 diaminopimelate epimerase 0.30 HGI48_RS13570 chemotaxis response regulator protein-glutamate methylesterase — —
Rahnella sp. WP5 0.58 EX31_RS15155 diaminopimelate epimerase 0.29 EX31_RS11360 chemotaxis response regulator protein-glutamate methylesterase low > 89
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4478 diaminopimelate epimerase (EC 5.1.1.7) 0.31 EX28DRAFT_0673 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain low > 76
Escherichia coli BW25113 0.58 b3809 dapF diaminopimelate epimerase (VIMSS) 0.30 b1883 cheB chemotaxis-specific methylesterase (NCBI) — —
Escherichia coli ECRC98 0.58 JDDGAC_18055 dapF diaminopimelate epimerase 0.30 JDDGAC_00725 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS01340 diaminopimelate epimerase 0.29 HER17_RS08120 chemotaxis response regulator protein-glutamate methylesterase — —
Escherichia coli ECRC102 0.58 NIAGMN_12185 dapF diaminopimelate epimerase 0.30 NIAGMN_01910 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli ECOR38 0.58 HEPCGN_13135 dapF diaminopimelate epimerase 0.30 HEPCGN_04570 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli ECRC99 0.58 KEDOAH_13720 dapF diaminopimelate epimerase 0.30 KEDOAH_01955 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli ECRC101 0.58 MCAODC_04935 dapF diaminopimelate epimerase 0.30 MCAODC_19255 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_04241 Diaminopimelate epimerase 0.30 OHPLBJKB_01845 Chemotaxis response regulator protein-glutamate methylesterase — —
Escherichia coli ECRC101 0.58 OKFHMN_14430 dapF diaminopimelate epimerase 0.30 OKFHMN_26150 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli ECRC62 0.58 BNILDI_04975 dapF diaminopimelate epimerase 0.30 BNILDI_15380 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia coli BL21 0.58 ECD_03685 diaminopimelate epimerase 0.30 ECD_01854 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA low > 60
Escherichia coli ECOR27 0.58 NOLOHH_06560 dapF diaminopimelate epimerase 0.30 NOLOHH_16590 cheB protein-glutamate methylesterase/protein glutamine deamidase — —
Escherichia fergusonii Becca 0.58 EFB2_04828 Diaminopimelate epimerase 0.30 EFB2_02060 Protein-glutamate methylesterase/protein-glutamine glutaminase — —
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS21455 diaminopimelate epimerase 0.28 HSERO_RS08460 chemotaxis protein CheY — —
Enterobacter sp. TBS_079 0.57 MPMX20_04467 Diaminopimelate epimerase 0.30 MPMX20_02787 Protein-glutamate methylesterase/protein-glutamine glutaminase low > 85
Escherichia coli Nissle 1917 0.57 ECOLIN_RS21865 diaminopimelate epimerase 0.30 ECOLIN_RS10755 protein-glutamate methylesterase/protein glutamine deamidase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF237 Diaminopimelate epimerase (EC 5.1.1.7) 0.30 GFF1664 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) — —
Dickeya dadantii 3937 0.57 DDA3937_RS19900 diaminopimelate epimerase 0.30 DDA3937_RS13525 chemotaxis response regulator protein-glutamate methylesterase — —
Serratia liquefaciens MT49 0.57 IAI46_00715 diaminopimelate epimerase 0.30 IAI46_16015 chemotaxis response regulator protein-glutamate methylesterase — —
Shewanella sp. ANA-3 0.56 Shewana3_0391 dapF diaminopimelate epimerase (RefSeq) 0.59 Shewana3_1363 chemotaxis-specific methylesterase (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO4308 dapF diaminopimelate epimerase (NCBI ptt file) 0.58 SO3206 cheB-3 protein-glutamate methylesterase CheB (NCBI ptt file) — —
Pantoea sp. MT58 0.56 IAI47_18410 diaminopimelate epimerase 0.31 IAI47_08330 chemotaxis response regulator protein-glutamate methylesterase low > 76
Erwinia tracheiphila SCR3 0.56 LU632_RS24145 dapF diaminopimelate epimerase 0.30 LU632_RS13525 chemotaxis response regulator protein-glutamate methylesterase — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS01250 diaminopimelate epimerase 0.31 RR42_RS35785 chemotaxis protein — —
Alteromonas macleodii MIT1002 0.56 MIT1002_00159 Diaminopimelate epimerase 0.51 MIT1002_01107 Chemotaxis response regulator protein-glutamate methylesterase of group 1 operon — —
Shewanella loihica PV-4 0.55 Shew_0323 dapF diaminopimelate epimerase (RefSeq) 0.55 Shew_1387 chemotaxis-specific methylesterase (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS00365 diaminopimelate epimerase 0.28 QEN71_RS28985 chemotaxis response regulator protein-glutamate methylesterase — —
Ralstonia solanacearum UW163 0.54 UW163_RS03515 diaminopimelate epimerase 0.12 UW163_RS21735 chemotaxis response regulator protein-glutamate methylesterase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS10065 diaminopimelate epimerase 0.12 RALBFv3_RS17415 chemotaxis response regulator protein-glutamate methylesterase — —
Ralstonia solanacearum PSI07 0.53 RPSI07_RS23305 diaminopimelate epimerase 0.27 RPSI07_RS06230 chemotaxis response regulator protein-glutamate methylesterase — —
Shewanella amazonensis SB2B 0.53 Sama_3249 dapF diaminopimelate epimerase (RefSeq) 0.57 Sama_2276 chemotaxis-specific methylesterase (RefSeq) — —
Paraburkholderia graminis OAS925 0.52 ABIE53_000428 diaminopimelate epimerase 0.12 ABIE53_000119 two-component system chemotaxis response regulator CheB — —
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_02200 diaminopimelate epimerase 0.12 H281DRAFT_05747 two-component system, chemotaxis family, response regulator CheB — —
Ralstonia solanacearum GMI1000 0.50 RS_RS00675 diaminopimelate epimerase 0.29 RS_RS23895 chemotaxis response regulator protein-glutamate methylesterase — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_1993 Diaminopimelate epimerase (EC 5.1.1.7) 0.28 Ac3H11_1425 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) — —
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS15015 diaminopimelate epimerase 0.30 ABZR86_RS22205 chemotaxis response regulator protein-glutamate methylesterase — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS13465 diaminopimelate epimerase 0.29 ABCV34_RS05815 chemotaxis response regulator protein-glutamate methylesterase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF545 Diaminopimelate epimerase (EC 5.1.1.7) 0.31 GFF1479 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) — —
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_15335 dapF diaminopimelate epimerase 0.28 OKGIIK_02915 cheB Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains — —
Methanococcus maripaludis JJ 0.41 MMJJ_RS00375 diaminopimelate epimerase 0.34 MMJJ_RS00330 chemotaxis response regulator protein-glutamate methylesterase — —
Methanococcus maripaludis S2 0.41 MMP_RS04760 diaminopimelate epimerase 0.33 MMP_RS04805 chemotaxis response regulator protein-glutamate methylesterase — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS08310 diaminopimelate epimerase 0.28 LRK55_RS13410 chemotaxis response regulator protein-glutamate methylesterase — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS08545 diaminopimelate epimerase 0.28 LRK54_RS13670 chemotaxis response regulator protein-glutamate methylesterase — —
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.845.1 Diaminopimelate epimerase (EC 5.1.1.7) 0.31 Xcc-8004.2888.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) — —
Rhodopseudomonas palustris CGA009 0.28 TX73_001300 diaminopimelate epimerase 0.29 TX73_000705 chemotaxis response regulator protein-glutamate methylesterase — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU1867 dapF diaminopimelate epimerase (TIGR) 0.42 DVU2078 cheB-2 protein-glutamate methylesterase CheB (TIGR) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_19550 diaminopimelate epimerase 0.18 CA264_07600 chemotaxis response regulator protein-glutamate methylesterase — —
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_0561 dapF diaminopimelate epimerase (RefSeq) 0.41 DvMF_0780 response regulator receiver modulated CheB methylesterase (RefSeq) — —

Not shown: 21 genomes with orthologs for PS417_27585 only; 9 genomes with orthologs for PS417_19675 only