Conservation of cofitness between Psest_1016 and Psest_3190 in Pseudomonas stutzeri RCH2

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1016 putative TIM-barrel protein, nifR3 family 1.0 Psest_3190 pyruvate kinase 0.28 4
Pseudomonas sp. S08-1 0.80 OH686_07610 tRNA-dihydrouridine synthase DusB 0.81 OH686_18800 pyruvate kinase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.84 Psyr_4029 pyruvate kinase low > 86
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.84 Psyr_4029 pyruvate kinase low > 86
Pseudomonas simiae WCS417 0.78 PS417_02950 tRNA-dihydrouridine synthase B 0.84 PS417_22620 pyruvate kinase low > 88
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.84 PFLU_RS24255 pyruvate kinase low > 109
Pseudomonas fluorescens SBW25 0.78 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.84 PFLU_RS24255 pyruvate kinase low > 109
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_08215 tRNA-dihydrouridine synthase B 0.84 AO356_17830 pyruvate kinase low > 104
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.84 Pf1N1B4_678 Pyruvate kinase (EC 2.7.1.40) low > 87
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_13660 tRNA-dihydrouridine synthase B 0.84 AO353_03775 pyruvate kinase low > 101
Pseudomonas sp. RS175 0.77 PFR28_05216 tRNA-dihydrouridine synthase B 0.84 PFR28_03455 Pyruvate kinase II low > 88
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.83 Pf6N2E2_5494 Pyruvate kinase (EC 2.7.1.40) low > 103
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.84 PfGW456L13_1813 Pyruvate kinase (EC 2.7.1.40) low > 87
Pseudomonas putida KT2440 0.76 PP_4820 tRNA-dihydrouridine synthase B 0.81 PP_1362 pyruvate kinase II low > 96
Marinobacter adhaerens HP15 0.69 HP15_3225 tRNA-dihydrouridine synthase B 0.60 HP15_2176 pyruvate kinase II low > 73
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase 0.55 B158DRAFT_1404 pyruvate kinase low > 40
Lysobacter sp. OAE881 0.61 ABIE51_RS16450 tRNA dihydrouridine synthase DusB 0.43 ABIE51_RS17040 pyruvate kinase low > 62
Ralstonia solanacearum PSI07 0.61 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.47 RPSI07_RS21150 pyruvate kinase low > 81
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.47 RALBFv3_RS12180 pyruvate kinase low > 76
Ralstonia solanacearum UW163 0.60 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.47 UW163_RS01430 pyruvate kinase — —
Ralstonia solanacearum GMI1000 0.60 RS_RS02515 tRNA dihydrouridine synthase DusB 0.46 RS_RS02865 pyruvate kinase low > 80
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.47 QEN71_RS02430 pyruvate kinase low > 153
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.47 ABZR87_RS08070 pyruvate kinase low > 80
Alteromonas macleodii MIT1002 0.60 MIT1002_03957 putative tRNA-dihydrouridine synthase 0.53 MIT1002_02409 Pyruvate kinase II — —
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.46 HSERO_RS03350 hypothetical protein low > 78
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.49 H281DRAFT_04189 pyruvate kinase low > 103
Dechlorosoma suillum PS 0.59 Dsui_1593 putative TIM-barrel protein, nifR3 family 0.50 Dsui_0052 pyruvate kinase low > 51
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB 0.44 OKGIIK_01070 pyk pyruvate kinase low > 52
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS02730 tRNA-dihydrouridine synthase B 0.46 RR42_RS03210 pyruvate kinase low > 128
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11525 tRNA dihydrouridine synthase DusB 0.43 ABZR86_RS18630 pyruvate kinase low > 74
Shewanella amazonensis SB2B 0.58 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.54 Sama_1814 pyruvate kinase (RefSeq) low > 62
Paraburkholderia graminis OAS925 0.57 ABIE53_003489 tRNA-dihydrouridine synthase B 0.49 ABIE53_003427 pyruvate kinase low > 113
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.49 BPHYT_RS16265 hypothetical protein low > 109
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS12140 tRNA dihydrouridine synthase DusB 0.44 LRK54_RS05775 pyruvate kinase low > 59
Rhodanobacter denitrificans MT42 0.57 LRK55_RS11875 tRNA dihydrouridine synthase DusB 0.44 LRK55_RS05530 pyruvate kinase low > 63
Enterobacter sp. TBS_079 0.56 MPMX20_04169 tRNA-dihydrouridine synthase B 0.52 MPMX20_02759 Pyruvate kinase II low > 85
Castellaniella sp019104865 MT123 0.56 ABCV34_RS07960 tRNA dihydrouridine synthase DusB 0.70 ABCV34_RS02525 pyruvate kinase low > 48
Rahnella sp. WP5 0.56 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.53 EX31_RS10640 pyruvate kinase low > 89
Escherichia coli BL21 0.55 ECD_03118 tRNA-dihydrouridine synthase B 0.52 ECD_01825 pyruvate kinase II low > 60
Escherichia coli ECOR27 0.55 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.53 NOLOHH_16835 pyk pyruvate kinase low > 57
Escherichia coli ECRC101 0.55 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.52 MCAODC_19085 pyk pyruvate kinase — —
Escherichia coli ECRC102 0.55 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.52 NIAGMN_01740 pyk pyruvate kinase — —
Escherichia coli ECRC62 0.55 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.53 BNILDI_15630 pyk pyruvate kinase — —
Escherichia fergusonii Becca 0.55 EFB2_00564 tRNA-dihydrouridine synthase B 0.53 EFB2_02088 Pyruvate kinase II low > 86
Escherichia coli ECRC101 0.55 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.52 OKFHMN_26320 pyk pyruvate kinase — —
Escherichia coli ECOR38 0.55 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.53 HEPCGN_04725 pyk pyruvate kinase low > 85
Escherichia coli BW25113 0.55 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.52 b1854 pykA pyruvate kinase (NCBI) low > 76
Escherichia coli Nissle 1917 0.55 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.53 ECOLIN_RS10330 pyruvate kinase — —
Shewanella sp. ANA-3 0.55 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) 0.55 Shewana3_2153 pyruvate kinase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.55 SO0394 conserved hypothetical protein (NCBI ptt file) 0.56 SO2491 pykA pyruvate kinase II (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.55 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.52 HER17_RS11790 pyruvate kinase low > 75
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.52 EX28DRAFT_0702 pyruvate kinase low > 76
Klebsiella michiganensis M5al 0.55 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.51 BWI76_RS18115 pyruvate kinase — —
Dickeya dianthicola 67-19 0.55 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.53 HGI48_RS10155 pyruvate kinase low > 71
Dickeya dadantii 3937 0.55 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.53 DDA3937_RS10125 pyruvate kinase low > 74
Dickeya dianthicola ME23 0.54 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.53 DZA65_RS10570 pyruvate kinase low > 75
Serratia liquefaciens MT49 0.54 IAI46_22775 tRNA dihydrouridine synthase DusB 0.53 IAI46_14585 pyruvate kinase low > 86
Shewanella loihica PV-4 0.54 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) 0.55 Shew_2050 pyruvate kinase (RefSeq) — —
Variovorax sp. OAS795 0.54 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.46 ABID97_RS01755 pyruvate kinase low > 91
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_01495 tRNA dihydrouridine synthase DusB 0.53 CSW01_10025 pyruvate kinase low > 62
Pantoea sp. MT58 0.53 IAI47_02385 tRNA dihydrouridine synthase DusB 0.53 IAI47_08485 pyruvate kinase low > 76
Variovorax sp. SCN45 0.53 GFF2144 tRNA-dihydrouridine synthase DusB 0.46 GFF5504 Pyruvate kinase (EC 2.7.1.40) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.46 GFF2780 Pyruvate kinase (EC 2.7.1.40) low > 90
Acidovorax sp. GW101-3H11 0.50 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.45 Ac3H11_654 Pyruvate kinase (EC 2.7.1.40) low > 79
Escherichia coli ECRC98 0.49 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB 0.52 JDDGAC_00895 pyk pyruvate kinase — —
Escherichia coli ECRC99 0.49 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB 0.52 KEDOAH_01785 pyk pyruvate kinase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase 0.52 OHPLBJKB_01874 Pyruvate kinase II low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.53 GFF1633 Pyruvate kinase (EC 2.7.1.40) low > 78
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) 0.25 BT2841 pyruvate kinase (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS06125 tRNA dihydrouridine synthase DusB 0.23 ABI39_RS07010 pyruvate kinase low > 72
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB 0.23 HMPREF1058_RS09670 pyruvate kinase — —
Bacteroides ovatus ATCC 8483 0.32 BACOVA_02724 TIM-barrel protein, nifR3 family 0.25 BACOVA_02121 pyruvate kinase — —
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB 0.25 HMPREF1181_RS01240 pyruvate kinase low > 56

Not shown: 22 genomes with orthologs for Psest_1016 only; 2 genomes with orthologs for Psest_3190 only