Conservation of cofitness between HP15_2221 and HP15_3065 in Marinobacter adhaerens HP15

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_2221 pseudouridine synthase, RluA family 1.0 HP15_3065 tRNA pseudouridine synthase B 0.34 20
Shewanella loihica PV-4 0.49 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.44 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Pantoea sp. MT58 0.48 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.47 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Shewanella amazonensis SB2B 0.48 Sama_1988 pseudouridylate synthase (RefSeq) 0.47 Sama_0963 pseudouridylate synthase (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.48 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.45 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB low > 74
Alteromonas macleodii MIT1002 0.47 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.41 MIT1002_01773 tRNA pseudouridine synthase B low > 70
Shewanella sp. ANA-3 0.47 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.45 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.47 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.47 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Escherichia coli ECRC102 0.46 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC101 0.46 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC101 0.46 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC98 0.46 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC99 0.46 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECOR27 0.46 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.78 29
Escherichia coli ECOR38 0.46 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.95 30
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.49 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Escherichia coli BL21 0.46 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.49 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.73 41
Escherichia coli ECRC62 0.46 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB — —
Klebsiella michiganensis M5al 0.46 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.48 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Escherichia coli Nissle 1917 0.46 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 52
Escherichia coli BW25113 0.46 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.49 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.36 1
Escherichia fergusonii Becca 0.46 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.49 EFB2_00657 tRNA pseudouridine synthase B low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.48 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.88 1
Pseudomonas putida KT2440 0.46 PP_1906 ribosomal large subunit pseudouridine synthase C 0.43 PP_4710 tRNA pseudouridine 55 synthase low > 96
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_20125 23S rRNA pseudouridylate synthase 0.45 AO356_07400 pseudouridine synthase 0.25 103
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Rahnella sp. WP5 0.46 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.43 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Pseudomonas sp. RS175 0.45 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.44 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas sp. S08-1 0.45 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.44 OH686_17155 tRNA pseudouridine(55) synthase low > 80
Pseudomonas fluorescens SBW25 0.45 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.43 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.43 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.29 22
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.45 B158DRAFT_0108 tRNA pseudouridine 55 synthase low > 40
Pseudomonas simiae WCS417 0.45 PS417_21480 23S rRNA pseudouridylate synthase 0.43 PS417_23960 pseudouridine synthase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.46 CSW01_03400 tRNA pseudouridine(55) synthase TruB low > 62
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_01405 23S rRNA pseudouridylate synthase 0.44 AO353_05550 pseudouridine synthase low > 101
Pectobacterium carotovorum WPP14 0.44 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.45 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.43 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.43 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas stutzeri RCH2 0.44 Psest_1680 pseudouridine synthase, RluA family 0.46 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Serratia liquefaciens MT49 0.44 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.47 IAI46_01945 tRNA pseudouridine(55) synthase TruB low > 86
Dickeya dianthicola ME23 0.44 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.47 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB low > 75
Dickeya dadantii 3937 0.44 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.71 12
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.44 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Dickeya dianthicola 67-19 0.44 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.47 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.40 HSERO_RS17985 tRNA pseudouridine synthase B low > 78
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS10090 RluA family pseudouridine synthase 0.38 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB low > 80
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS14155 pseudouridine synthase 0.40 RR42_RS12835 tRNA pseudouridine synthase B low > 128
Ralstonia solanacearum PSI07 0.40 RPSI07_RS19085 RluA family pseudouridine synthase 0.38 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB low > 81
Ralstonia solanacearum UW163 0.40 UW163_RS11840 RluA family pseudouridine synthase 0.39 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS14375 RluA family pseudouridine synthase 0.39 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB low > 76
Variovorax sp. SCN45 0.39 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.38 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) low > 127
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS04500 RluA family pseudouridine synthase 0.39 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB low > 153
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.33 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 74
Ralstonia solanacearum GMI1000 0.39 RS_RS05155 RluA family pseudouridine synthase 0.39 RS_RS06470 tRNA pseudouridine(55) synthase TruB low > 80
Paraburkholderia graminis OAS925 0.39 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.39 ABIE53_001832 tRNA pseudouridine55 synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.38 H281DRAFT_05106 tRNA pseudouridine synthase B low > 103
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.39 BPHYT_RS08080 tRNA pseudouridine synthase B 0.47 67
Dechlorosoma suillum PS 0.38 Dsui_2437 pseudouridine synthase, RluA family 0.40 Dsui_2720 tRNA pseudouridine 55 synthase low > 51
Lysobacter sp. OAE881 0.38 ABIE51_RS11800 RluA family pseudouridine synthase 0.35 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.82 5
Rhodanobacter denitrificans MT42 0.37 LRK55_RS17750 RluA family pseudouridine synthase 0.37 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB low > 63
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS17895 RluA family pseudouridine synthase 0.37 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB low > 59
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.35 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB low > 52
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS02725 RluA family pseudouridine synthase 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB low > 74
Agrobacterium fabrum C58 0.23 Atu1471 ribosomal large subunit pseudouridine synthase C 0.26 Atu0085 tRNA pseudouridine 55 synthase — —
Rhizobium sp. OAE497 0.22 ABIE40_RS09915 RluA family pseudouridine synthase 0.27 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB low > 107
Sinorhizobium meliloti 1021 0.22 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.26 SMc00321 tRNA pseudouridine synthase B 0.59 60
Phaeobacter inhibens DSM 17395 0.22 PGA1_c01950 ribosomal large subunit pseudouridine synthase C 0.30 PGA1_c32950 tRNA pseudouridine synthase B — —
Rhodospirillum rubrum S1H 0.21 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.26 Rru_A3783 tRNA pseudouridine synthase B (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.20 A4249_RS07865 RluA family pseudouridine synthase 0.28 A4249_RS13345 tRNA pseudouridine(55) synthase TruB low > 48
Azospirillum sp. SherDot2 0.20 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.28 MPMX19_02524 tRNA pseudouridine synthase B low > 112
Dinoroseobacter shibae DFL-12 0.20 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) 0.29 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) low > 64
Magnetospirillum magneticum AMB-1 0.20 AMB_RS15620 RluA family pseudouridine synthase 0.26 AMB_RS20810 tRNA pseudouridine(55) synthase TruB low > 64

Not shown: 8 genomes with orthologs for HP15_2221 only; 5 genomes with orthologs for HP15_3065 only