Conservation of cofitness between Psest_3190 and Psest_3100 in Pseudomonas stutzeri RCH2

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3190 pyruvate kinase 1.0 Psest_3100 RNA polymerase sigma factor RpoE 0.39 13
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_678 Pyruvate kinase (EC 2.7.1.40) 0.94 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT — —
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_03775 pyruvate kinase 0.94 AO353_17625 RNA polymerase subunit sigma low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4029 pyruvate kinase 0.94 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4029 pyruvate kinase 0.94 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE low > 86
Pseudomonas sp. RS175 0.84 PFR28_03455 Pyruvate kinase II 0.94 PFR28_00690 RNA polymerase sigma-H factor low > 88
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_1813 Pyruvate kinase (EC 2.7.1.40) 0.94 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT low > 87
Pseudomonas simiae WCS417 0.84 PS417_22620 pyruvate kinase 0.94 PS417_07120 RNA polymerase sigma-H factor low > 88
Pseudomonas fluorescens SBW25 0.84 PFLU_RS24255 pyruvate kinase 0.94 PFLU_RS07230 RNA polymerase sigma factor RpoE low > 109
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS24255 pyruvate kinase 0.94 PFLU_RS07230 RNA polymerase sigma factor RpoE low > 109
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_17830 pyruvate kinase 0.94 AO356_04575 RNA polymerase subunit sigma low > 104
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_5494 Pyruvate kinase (EC 2.7.1.40) 0.94 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT low > 103
Pseudomonas putida KT2440 0.81 PP_1362 pyruvate kinase II 0.94 PP_1427 RNA polymerase sigma E factor low > 96
Pseudomonas sp. S08-1 0.81 OH686_18800 pyruvate kinase 0.94 OH686_20045 RNA polymerase sigma factor RpoE low > 80
Castellaniella sp019104865 MT123 0.70 ABCV34_RS02525 pyruvate kinase 0.58 ABCV34_RS08355 RNA polymerase sigma factor RpoE low > 48
Shewanella oneidensis MR-1 0.56 SO2491 pykA pyruvate kinase II (NCBI ptt file) 0.72 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) — —
Shewanella sp. ANA-3 0.55 Shewana3_2153 pyruvate kinase (RefSeq) 0.71 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1404 pyruvate kinase 0.70 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE low > 40
Shewanella loihica PV-4 0.55 Shew_2050 pyruvate kinase (RefSeq) 0.70 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) — —
Shewanella amazonensis SB2B 0.54 Sama_1814 pyruvate kinase (RefSeq) 0.65 Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_10025 pyruvate kinase 0.67 CSW01_12485 RNA polymerase sigma factor RpoE — —
Pantoea sp. MT58 0.53 IAI47_08485 pyruvate kinase 0.66 IAI47_04850 RNA polymerase sigma factor RpoE — —
Alteromonas macleodii MIT1002 0.53 MIT1002_02409 Pyruvate kinase II 0.71 MIT1002_02719 Sigma-24 — —
Dickeya dianthicola ME23 0.53 DZA65_RS10570 pyruvate kinase 0.65 DZA65_RS16930 RNA polymerase sigma factor RpoE low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS10155 pyruvate kinase 0.65 HGI48_RS15850 RNA polymerase sigma factor RpoE low > 71
Dickeya dadantii 3937 0.53 DDA3937_RS10125 pyruvate kinase 0.66 DDA3937_RS15765 RNA polymerase sigma factor RpoE low > 74
Rahnella sp. WP5 0.53 EX31_RS10640 pyruvate kinase 0.66 EX31_RS21800 RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC62 0.53 BNILDI_15630 pyk pyruvate kinase 0.66 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECOR27 0.53 NOLOHH_16835 pyk pyruvate kinase 0.66 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE — —
Escherichia fergusonii Becca 0.53 EFB2_02088 Pyruvate kinase II 0.66 EFB2_01323 ECF RNA polymerase sigma-E factor — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF1633 Pyruvate kinase (EC 2.7.1.40) 0.65 GFF2107 RNA polymerase sigma factor RpoE — —
Escherichia coli ECOR38 0.53 HEPCGN_04725 pyk pyruvate kinase 0.66 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10330 pyruvate kinase 0.66 ECOLIN_RS14560 RNA polymerase sigma factor RpoE — —
Serratia liquefaciens MT49 0.53 IAI46_14585 pyruvate kinase 0.66 IAI46_19585 RNA polymerase sigma factor RpoE — —
Escherichia coli BW25113 0.52 b1854 pykA pyruvate kinase (NCBI) 0.66 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) — —
Escherichia coli BL21 0.52 ECD_01825 pyruvate kinase II 0.66 ECD_02467 RNA polymerase sigma E factor — —
Pectobacterium carotovorum WPP14 0.52 HER17_RS11790 pyruvate kinase 0.66 HER17_RS05780 RNA polymerase sigma factor RpoE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01874 Pyruvate kinase II 0.66 OHPLBJKB_01134 ECF RNA polymerase sigma-E factor — —
Escherichia coli ECRC102 0.52 NIAGMN_01740 pyk pyruvate kinase 0.66 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC98 0.52 JDDGAC_00895 pyk pyruvate kinase 0.66 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC99 0.52 KEDOAH_01785 pyk pyruvate kinase 0.66 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC101 0.52 MCAODC_19085 pyk pyruvate kinase 0.66 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC101 0.52 OKFHMN_26320 pyk pyruvate kinase 0.66 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE — —
Erwinia tracheiphila SCR3 0.52 LU632_RS13370 pyk pyruvate kinase 0.66 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE 0.78 4
Enterobacter sp. TBS_079 0.52 MPMX20_02759 Pyruvate kinase II 0.66 MPMX20_03444 ECF RNA polymerase sigma-E factor — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_0702 pyruvate kinase 0.66 EX28DRAFT_0072 RNA polymerase sigma factor RpoE — —
Klebsiella michiganensis M5al 0.51 BWI76_RS18115 pyruvate kinase 0.65 BWI76_RS21355 RNA polymerase sigma factor RpoE — —
Dechlorosoma suillum PS 0.50 Dsui_0052 pyruvate kinase 0.61 Dsui_2453 RNA polymerase sigma factor RpoE — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16265 hypothetical protein 0.61 BPHYT_RS14405 RNA polymerase sigma factor RpoE — —
Paraburkholderia graminis OAS925 0.49 ABIE53_003427 pyruvate kinase 0.61 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) 0.27 89
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04189 pyruvate kinase 0.60 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS08070 pyruvate kinase 0.61 ABZR87_RS10165 RNA polymerase sigma factor RpoE low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS02430 pyruvate kinase 0.60 QEN71_RS04575 RNA polymerase sigma factor RpoE low > 153
Ralstonia solanacearum UW163 0.47 UW163_RS01430 pyruvate kinase 0.62 UW163_RS11910 RNA polymerase sigma factor RpoE — —
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS12180 pyruvate kinase 0.62 RALBFv3_RS14445 RNA polymerase sigma factor RpoE low > 76
Ralstonia solanacearum PSI07 0.47 RPSI07_RS21150 pyruvate kinase 0.62 RPSI07_RS19015 RNA polymerase sigma factor RpoE low > 81
Ralstonia solanacearum GMI1000 0.46 RS_RS02865 pyruvate kinase 0.62 RS_RS05225 RNA polymerase sigma factor RpoE low > 80
Variovorax sp. OAS795 0.46 ABID97_RS01755 pyruvate kinase 0.49 ABID97_RS08330 RNA polymerase sigma factor RpoE low > 91
Variovorax sp. SCN45 0.46 GFF5504 Pyruvate kinase (EC 2.7.1.40) 0.48 GFF3863 RNA polymerase sigma factor RpoE low > 127
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS03350 hypothetical protein 0.62 HSERO_RS09625 RNA polymerase sigma factor RpoE — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS03210 pyruvate kinase 0.62 RR42_RS14080 RNA polymerase sigma factor RpoE low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF2780 Pyruvate kinase (EC 2.7.1.40) 0.49 GFF3339 RNA polymerase sigma factor RpoE 0.71 42
Acidovorax sp. GW101-3H11 0.45 Ac3H11_654 Pyruvate kinase (EC 2.7.1.40) 0.49 Ac3H11_1573 RNA polymerase sigma factor RpoE — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS05775 pyruvate kinase 0.68 LRK54_RS16940 RNA polymerase sigma factor RpoE low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS05530 pyruvate kinase 0.68 LRK55_RS16655 RNA polymerase sigma factor RpoE — —
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_01070 pyk pyruvate kinase 0.68 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE low > 52
Lysobacter sp. OAE881 0.43 ABIE51_RS17040 pyruvate kinase 0.64 ABIE51_RS13890 RNA polymerase sigma factor RpoE low > 62
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS18630 pyruvate kinase 0.67 ABZR86_RS07180 RNA polymerase sigma factor RpoE low > 74
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1243.1 Pyruvate kinase (EC 2.7.1.40) 0.63 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE low > 74
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS01240 pyruvate kinase 0.22 HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor low > 56
Bacteroides thetaiotaomicron VPI-5482 0.25 BT2841 pyruvate kinase (NCBI ptt file) 0.23 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.25 BACOVA_02121 pyruvate kinase 0.23 BACOVA_00669 Sigma-70 region 2 — —
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS09670 pyruvate kinase 0.20 HMPREF1058_RS15730 RNA polymerase sigma factor — —
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS07010 pyruvate kinase 0.20 ABI39_RS11710 RNA polymerase sigma factor low > 72

Not shown: 1 genomes with orthologs for Psest_3190 only; 9 genomes with orthologs for Psest_3100 only