| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Variovorax sp. SCN45 | 1.0 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 1.0 | GFF2852 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | 0.88 | 2 |
| Variovorax sp. OAS795 | 0.96 | ABID97_RS20695 | | metalloprotease PmbA | 0.83 | ABID97_RS10675 | | SurA N-terminal domain-containing protein | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.81 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.53 | Ac3H11_377 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.75 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.49 | GFF3854 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS09265 | | peptidase C69 | 0.35 | HSERO_RS11155 | | peptidyl-prolyl cis-trans isomerase | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.60 | ABCV34_RS10610 | | metalloprotease PmbA | 0.23 | ABCV34_RS03085 | | SurA N-terminal domain-containing protein | — | — |
| Ralstonia solanacearum UW163 | 0.60 | UW163_RS15845 | | metalloprotease PmbA | 0.36 | UW163_RS14630 | | peptidylprolyl isomerase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.60 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.36 | RALBFv3_RS01320 | | peptidylprolyl isomerase | 0.69 | 26 |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS19505 | | metalloprotease PmbA | 0.36 | RPSI07_RS16155 | | peptidylprolyl isomerase | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS09660 | | metalloprotease PmbA | 0.36 | ABZR87_RS12765 | | SurA N-terminal domain-containing protein | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.59 | ABIE53_003116 | | PmbA protein | 0.33 | ABIE53_002134 | | peptidyl-prolyl cis-trans isomerase D | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS14750 | | peptidase PMbA | 0.37 | RR42_RS09045 | | peptidylprolyl isomerase | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.33 | H281DRAFT_00902 | | peptidyl-prolyl cis-trans isomerase D | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS04270 | | metalloprotease PmbA | 0.35 | QEN71_RS21955 | | SurA N-terminal domain-containing protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.58 | BPHYT_RS14705 | | peptidase C69 | 0.33 | BPHYT_RS09480 | | peptidyl-prolyl cis-trans isomerase | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS04700 | | metalloprotease PmbA | 0.37 | RS_RS08675 | | peptidyl-prolyl cis-trans isomerase | low | > 80 |
| Dechlorosoma suillum PS | 0.51 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.29 | Dsui_2202 | | parvulin-like peptidyl-prolyl isomerase | 0.61 | 20 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.46 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.18 | Xcc-8004.4039.1 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 74 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_00163 | | Metalloprotease PmbA | 0.17 | PFR28_01231 | | Peptidyl-prolyl cis-trans isomerase D | 0.26 | 54 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.18 | ABZR86_RS07300 | | SurA N-terminal domain-containing protein | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.17 | Pf6N2E2_2214 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_07085 | | peptidase PmbA | 0.17 | AO356_01725 | | peptidylprolyl isomerase | — | — |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS20090 | | metalloprotease PmbA | 0.14 | HER17_RS15830 | | peptidylprolyl isomerase | low | > 75 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS04350 | | metalloprotease PmbA | 0.18 | PFLU_RS19150 | | peptidyl-prolyl cis-trans isomerase | — | — |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS04350 | | metalloprotease PmbA | 0.18 | PFLU_RS19150 | | peptidyl-prolyl cis-trans isomerase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.17 | OKGIIK_08010 | | Peptidylprolyl isomerase | 0.73 | 19 |
| Escherichia fergusonii Becca | 0.45 | EFB2_04298 | | Metalloprotease PmbA | 0.14 | EFB2_03616 | | Peptidyl-prolyl cis-trans isomerase D | low | > 86 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.13 | EX28DRAFT_2529 | | Parvulin-like peptidyl-prolyl isomerase | low | > 76 |
| Rahnella sp. WP5 | 0.45 | EX31_RS12320 | | metalloprotease PmbA | 0.14 | EX31_RS22265 | | peptidylprolyl isomerase | low | > 89 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_00517 | | Metalloprotease PmbA | 0.14 | MPMX20_01032 | | Peptidyl-prolyl cis-trans isomerase D | low | > 85 |
| Escherichia coli BL21 | 0.45 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.13 | ECD_00393 | | periplasmic folding chaperone, has an inactive PPIase domain | low | > 61 |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.14 | KEDOAH_19655 | ppiD | peptidylprolyl isomerase | — | — |
| Escherichia coli ECRC62 | 0.45 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.14 | BNILDI_22660 | ppiD | peptidylprolyl isomerase | low | > 75 |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.14 | JDDGAC_11965 | ppiD | peptidylprolyl isomerase | low | > 86 |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.14 | OKFHMN_08310 | ppiD | peptidylprolyl isomerase | low | > 80 |
| Escherichia coli Nissle 1917 | 0.45 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.14 | ECOLIN_RS02645 | | peptidylprolyl isomerase | low | > 55 |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.14 | NIAGMN_06365 | ppiD | peptidylprolyl isomerase | — | — |
| Escherichia coli ECOR27 | 0.45 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.13 | NOLOHH_01245 | ppiD | peptidylprolyl isomerase | low | > 75 |
| Escherichia coli ECRC101 | 0.45 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.14 | MCAODC_27535 | ppiD | peptidylprolyl isomerase | low | > 87 |
| Escherichia coli BW25113 | 0.45 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.14 | b0441 | ppiD | peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) | 0.26 | 26 |
| Escherichia coli ECOR38 | 0.45 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.14 | HEPCGN_06925 | ppiD | peptidylprolyl isomerase | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.13 | OHPLBJKB_03232 | | Peptidyl-prolyl cis-trans isomerase D | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.45 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.13 | GFF4357 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 78 |
| Pseudomonas simiae WCS417 | 0.44 | PS417_04295 | | peptidase PmbA | 0.17 | PS417_17215 | | peptidylprolyl isomerase | low | > 88 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.17 | LRK54_RS16755 | | SurA N-terminal domain-containing protein | low | > 59 |
| Pseudomonas fluorescens FW300-N1B4 | 0.44 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.17 | Pf1N1B4_3949 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Serratia liquefaciens MT49 | 0.44 | IAI46_22575 | | metalloprotease PmbA | 0.12 | IAI46_05030 | | peptidylprolyl isomerase | 0.52 | 50 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.17 | LRK55_RS16480 | | SurA N-terminal domain-containing protein | low | > 63 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_12845 | | metalloprotease PmbA | 0.19 | CSW01_09595 | | peptidylprolyl isomerase | low | > 62 |
| Pseudomonas sp. S08-1 | 0.44 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.18 | OH686_03625 | | Peptidyl-prolyl cis-trans isomerase PpiD | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.17 | PfGW456L13_2556 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 87 |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS02850 | | metalloprotease PmbA | 0.14 | BWI76_RS06545 | | peptidylprolyl isomerase | low | > 92 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_05205 | | peptidase PmbA | 0.17 | AO353_20200 | | peptidylprolyl isomerase | low | > 101 |
| Pantoea sp. MT58 | 0.43 | IAI47_02765 | | metalloprotease PmbA | 0.14 | IAI47_14635 | | peptidylprolyl isomerase | low | > 76 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS01500 | | metalloprotease PmbA | 0.12 | DDA3937_RS05660 | | peptidylprolyl isomerase | low | > 74 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.19 | Shewana3_2657 | | PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.42 | Sama_0482 | | PmbA protein (RefSeq) | 0.18 | Sama_1228 | | peptidyl-prolyl cis-trans isomerase D (RefSeq) | low | > 62 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS01415 | | metalloprotease PmbA | 0.12 | HGI48_RS05705 | | peptidylprolyl isomerase | low | > 71 |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS01480 | | metalloprotease PmbA | 0.12 | DZA65_RS06030 | | peptidylprolyl isomerase | low | > 75 |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS06805 | | metalloprotease PmbA | 0.17 | ABIE51_RS14120 | | peptidyl-prolyl cis-trans isomerase | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.11 | LU632_RS18325 | ppiD | peptidylprolyl isomerase | low | > 74 |
| Shewanella oneidensis MR-1 | 0.42 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.20 | SO1798 | ppiD | peptidyl-prolyl cis-trans isomerase D (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.17 | Psest_2283 | | Parvulin-like peptidyl-prolyl isomerase | — | — |
| Shewanella loihica PV-4 | 0.41 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.19 | Shew_2504 | | PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.13 | B158DRAFT_1042 | | Parvulin-like peptidyl-prolyl isomerase | low | > 40 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS11930 | | modulator protein | 0.10 | AZOBR_RS07495 | | peptidylprolyl isomerase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_01886 | | Metalloprotease PmbA | 0.09 | MPMX19_00894 | | Peptidyl-prolyl cis-trans isomerase D | — | — |
| Rhodopseudomonas palustris CGA009 | 0.27 | TX73_005930 | | TldD/PmbA family protein | 0.08 | TX73_014975 | | SurA N-terminal domain-containing protein | low | > 86 |
| Rhodospirillum rubrum S1H | 0.26 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.06 | Rru_A1890 | | hypothetical protein (NCBI) | low | > 58 |
Not shown: 18 genomes with orthologs for GFF4697 only; 3 genomes with orthologs for GFF2852 only